HEADER TRANSFERASE 27-MAY-15 5BP9 TITLE CRYSTAL STRUCTURE OF SAM-DEPENDENT METHYLTRANSFERASE FROM BACTEROIDES TITLE 2 FRAGILIS IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METHYLTRANSFERASE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PROTEIN WAS INCUBATED WITH TEV BEFORE CRYSTALLIZATION. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343; SOURCE 5 GENE: BF9343_1312; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS TRANSFERASE, STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL KEYWDS 2 GENOMICS RESEARCH CONSORTIUM, NYSGRC EXPDTA X-RAY DIFFRACTION AUTHOR O.A.GASIOROWSKA,I.G.SHABALIN,K.B.HANDING,M.T.CYMBOROWSKI,D.V.MASON, AUTHOR 2 J.BONANNO,R.SEIDEL,S.C.ALMO,W.MINOR,NEW YORK STRUCTURAL GENOMICS AUTHOR 3 RESEARCH CONSORTIUM (NYSGRC) REVDAT 4 09-OCT-24 5BP9 1 REMARK REVDAT 3 13-APR-22 5BP9 1 AUTHOR JRNL REVDAT 2 11-OCT-17 5BP9 1 SOURCE REMARK REVDAT 1 10-JUN-15 5BP9 0 JRNL AUTH O.A.GASIOROWSKA,I.G.SHABALIN,K.B.HANDING,M.T.CYMBOROWSKI, JRNL AUTH 2 D.MASON,J.BONANNO,R.SEIDEL,S.C.ALMO,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF SAM-DEPENDENT METHYLTRANSFERASE JRNL TITL 2 FROMBACTEROIDES FRAGILIS IN COMPLEX WITH JRNL TITL 3 S-ADENOSYL-L-HOMOCYSTEINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 35821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1836 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2583 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1853 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.499 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2029 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1928 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2745 ; 1.562 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4445 ; 1.085 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 5.562 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;30.027 ;23.918 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;11.552 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;11.605 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2283 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 463 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 976 ; 3.105 ; 1.827 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 975 ; 3.053 ; 1.821 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1220 ; 3.277 ; 2.715 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1976 ; 7.225 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1929 ;16.133 ; 0.100 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5BP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37846 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELX, MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 15 MG/ML PROTEIN IN 20 MM REMARK 280 HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 0.1% SODIUM AZIDE AND REMARK 280 0.5 MM TCEP WERE MIXED WITH 0.2 UL OF THE TOP96 CONDITION #29 REMARK 280 (0.2 M AMMONIUM SULFATE, 0.1 M SODIUM CACODYLATE:HCL PH 6.5, 30% REMARK 280 (W/V) PEG 8000) AND EQUILIBRATED AGAINST 1.5 M NACL SOLUTION IN REMARK 280 96 WELL 3 DROP CRYSTALLIZATION PLATE (SWISSCI). BEFORE REMARK 280 CRYSTALLIZATION PROTEIN WAS INCUBATED WITH 1/50 V/V OF 1 MG/ML REMARK 280 TEV SOLUTION AT 289 K FOR 3 HOURS, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.86600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.37150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.37150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.86600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 VAL A -10 REMARK 465 ASP A -9 REMARK 465 LEU A -8 REMARK 465 GLY A -7 REMARK 465 THR A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 SER A 1 REMARK 465 MSE A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 PRO A 8 REMARK 465 ALA A 9 REMARK 465 VAL A 10 REMARK 465 THR A 11 REMARK 465 THR A 12 REMARK 465 LYS A 13 REMARK 465 ASN A 14 REMARK 465 GLN A 15 REMARK 465 ALA A 66 REMARK 465 GLY A 67 REMARK 465 LEU A 195 REMARK 465 ILE A 196 REMARK 465 ASP A 197 REMARK 465 LEU A 198 REMARK 465 ALA A 199 REMARK 465 GLY A 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 17 SE CE REMARK 470 LYS A 41 CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 GLN A 61 CG CD OE1 NE2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 124 CE NZ REMARK 470 LYS A 167 CE NZ REMARK 470 ASP A 201 CG OD1 OD2 REMARK 470 LYS A 240 CD CE NZ REMARK 470 HIS A 249 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 147 69.87 70.29 REMARK 500 MSE A 147 69.92 70.48 REMARK 500 LYS A 213 -121.22 54.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 734 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 6.62 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ETE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BP7 RELATED DB: PDB REMARK 900 RELATED ID: NYSGRC-030801 RELATED DB: TARGETTRACK DBREF 5BP9 A 3 260 UNP Q5LFK0 Q5LFK0_BACFN 2 259 SEQADV 5BP9 MSE A -20 UNP Q5LFK0 INITIATING METHIONINE SEQADV 5BP9 HIS A -19 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 HIS A -18 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 HIS A -17 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 HIS A -16 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 HIS A -15 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 HIS A -14 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 SER A -13 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 SER A -12 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 GLY A -11 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 VAL A -10 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 ASP A -9 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 LEU A -8 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 GLY A -7 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 THR A -6 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 GLU A -5 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 ASN A -4 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 LEU A -3 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 TYR A -2 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 PHE A -1 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 GLN A 0 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 SER A 1 UNP Q5LFK0 EXPRESSION TAG SEQADV 5BP9 MSE A 2 UNP Q5LFK0 EXPRESSION TAG SEQRES 1 A 281 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 281 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ASN SER LEU SEQRES 3 A 281 SER LEU PRO ALA VAL THR THR LYS ASN GLN SER MSE ASN SEQRES 4 A 281 THR SER LEU LEU PRO ALA GLU LYS ASP PRO MSE GLY ALA SEQRES 5 A 281 ALA ILE ALA ASP PHE TYR HIS ARG GLN LYS ALA ASP ARG SEQRES 6 A 281 LEU ARG VAL PHE SER SER GLN PHE ASP GLU ASP GLU ILE SEQRES 7 A 281 PRO VAL LYS GLN LEU PHE ARG LYS ALA GLY GLN MSE PRO SEQRES 8 A 281 LEU LEU GLU ARG THR ALA LEU ALA MSE ALA THR GLY THR SEQRES 9 A 281 ILE LEU ASP VAL GLY ALA GLY SER GLY CYS HIS ALA LEU SEQRES 10 A 281 ALA LEU GLN GLU SER GLY LYS GLU VAL SER ALA ILE ASP SEQRES 11 A 281 ILE SER PRO LEU SER VAL GLU VAL MSE LYS LEU ARG GLY SEQRES 12 A 281 VAL LYS ASP ALA ARG GLN VAL ASN LEU PHE ASP GLU ARG SEQRES 13 A 281 PHE ALA ALA THR PHE ASP THR ILE LEU MSE LEU MSE ASN SEQRES 14 A 281 GLY SER GLY ILE ILE GLY ARG LEU GLU ASN MSE PRO LEU SEQRES 15 A 281 PHE PHE ARG LYS MSE LYS GLN LEU LEU ARG PRO ASP GLY SEQRES 16 A 281 CYS ILE LEU MSE ASP SER SER ASP LEU ARG TYR LEU PHE SEQRES 17 A 281 GLU ASP GLU ASP GLY SER PHE LEU ILE ASP LEU ALA GLY SEQRES 18 A 281 ASP TYR TYR GLY GLU ILE ASP PHE ARG MSE GLN TYR LYS SEQRES 19 A 281 ASP ILE GLN GLY ASP PRO PHE ASP TRP LEU TYR ILE ASP SEQRES 20 A 281 PHE GLN THR LEU SER ALA TYR ALA ALA ASP ASN GLY PHE SEQRES 21 A 281 LYS ALA GLU MSE ILE LYS GLU GLY LYS HIS TYR ASP TYR SEQRES 22 A 281 LEU ALA ARG LEU THR VAL ALA LEU MODRES 5BP9 MSE A 17 MET MODIFIED RESIDUE MODRES 5BP9 MSE A 29 MET MODIFIED RESIDUE MODRES 5BP9 MSE A 69 MET MODIFIED RESIDUE MODRES 5BP9 MSE A 79 MET MODIFIED RESIDUE MODRES 5BP9 MSE A 118 MET MODIFIED RESIDUE MODRES 5BP9 MSE A 145 MET MODIFIED RESIDUE MODRES 5BP9 MSE A 147 MET MODIFIED RESIDUE MODRES 5BP9 MSE A 159 MET MODIFIED RESIDUE MODRES 5BP9 MSE A 166 MET MODIFIED RESIDUE MODRES 5BP9 MSE A 178 MET MODIFIED RESIDUE MODRES 5BP9 MSE A 210 MET MODIFIED RESIDUE MODRES 5BP9 MSE A 243 MET MODIFIED RESIDUE HET MSE A 17 6 HET MSE A 29 8 HET MSE A 69 8 HET MSE A 79 8 HET MSE A 118 8 HET MSE A 145 13 HET MSE A 147 13 HET MSE A 159 8 HET MSE A 166 8 HET MSE A 178 8 HET MSE A 210 8 HET MSE A 243 13 HET ETE A 301 14 HET PG4 A 302 13 HET SAH A 303 26 HETNAM MSE SELENOMETHIONINE HETNAM ETE 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 ETE C9 H20 O5 FORMUL 3 PG4 C8 H18 O5 FORMUL 4 SAH C14 H20 N6 O5 S FORMUL 5 HOH *335(H2 O) HELIX 1 AA1 PRO A 23 LYS A 26 5 4 HELIX 2 AA2 ASP A 27 GLN A 40 1 14 HELIX 3 AA3 VAL A 59 ARG A 64 5 6 HELIX 4 AA4 PRO A 70 ALA A 80 1 11 HELIX 5 AA5 GLY A 92 SER A 101 1 10 HELIX 6 AA6 SER A 111 GLY A 122 1 12 HELIX 7 AA7 ASN A 148 GLY A 154 5 7 HELIX 8 AA8 ARG A 155 GLU A 157 5 3 HELIX 9 AA9 ASN A 158 LEU A 169 1 12 HELIX 10 AB1 LEU A 183 GLU A 188 5 6 HELIX 11 AB2 ASP A 226 ASN A 237 1 12 SHEET 1 AA1 4 ASP A 55 ILE A 57 0 SHEET 2 AA1 4 LEU A 45 PHE A 48 -1 N VAL A 47 O ASP A 55 SHEET 3 AA1 4 GLU A 205 TYR A 212 -1 O ARG A 209 N PHE A 48 SHEET 4 AA1 4 ILE A 215 GLN A 216 -1 O ILE A 215 N TYR A 212 SHEET 1 AA2 4 ASP A 55 ILE A 57 0 SHEET 2 AA2 4 LEU A 45 PHE A 48 -1 N VAL A 47 O ASP A 55 SHEET 3 AA2 4 GLU A 205 TYR A 212 -1 O ARG A 209 N PHE A 48 SHEET 4 AA2 4 PHE A 220 LEU A 223 -1 O TRP A 222 N ILE A 206 SHEET 1 AA3 7 ALA A 126 GLN A 128 0 SHEET 2 AA3 7 GLU A 104 ASP A 109 1 N ALA A 107 O ARG A 127 SHEET 3 AA3 7 THR A 83 VAL A 87 1 N ASP A 86 O SER A 106 SHEET 4 AA3 7 PHE A 140 MSE A 145 1 O LEU A 144 N LEU A 85 SHEET 5 AA3 7 LEU A 170 SER A 181 1 O ARG A 171 N PHE A 140 SHEET 6 AA3 7 ASP A 251 VAL A 258 -1 O ALA A 254 N MSE A 178 SHEET 7 AA3 7 PHE A 239 GLU A 246 -1 N LYS A 240 O THR A 257 LINK C SER A 16 N MSE A 17 1555 1555 1.34 LINK C MSE A 17 N ASN A 18 1555 1555 1.34 LINK C PRO A 28 N MSE A 29 1555 1555 1.35 LINK C MSE A 29 N GLY A 30 1555 1555 1.33 LINK C GLN A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N PRO A 70 1555 1555 1.34 LINK C ALA A 78 N MSE A 79 1555 1555 1.34 LINK C MSE A 79 N ALA A 80 1555 1555 1.33 LINK C VAL A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N LYS A 119 1555 1555 1.33 LINK C LEU A 144 N MSE A 145 1555 1555 1.34 LINK C MSE A 145 N LEU A 146 1555 1555 1.33 LINK C LEU A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N ASN A 148 1555 1555 1.33 LINK C ASN A 158 N MSE A 159 1555 1555 1.34 LINK C MSE A 159 N PRO A 160 1555 1555 1.35 LINK C LYS A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N LYS A 167 1555 1555 1.33 LINK C LEU A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N ASP A 179 1555 1555 1.33 LINK C ARG A 209 N MSE A 210 1555 1555 1.32 LINK C MSE A 210 N GLN A 211 1555 1555 1.33 LINK C GLU A 242 N MSE A 243 1555 1555 1.33 LINK C MSE A 243 N ILE A 244 1555 1555 1.34 SITE 1 AC1 8 ILE A 110 MSE A 210 PHE A 220 TRP A 222 SITE 2 AC1 8 SAH A 303 HOH A 471 HOH A 572 HOH A 582 SITE 1 AC2 2 GLN A 51 PHE A 52 SITE 1 AC3 17 ARG A 64 GLY A 88 HIS A 94 ASP A 109 SITE 2 AC3 17 ILE A 110 ASN A 130 LEU A 131 MSE A 147 SITE 3 AC3 17 ILE A 152 TRP A 222 ETE A 301 HOH A 408 SITE 4 AC3 17 HOH A 424 HOH A 452 HOH A 495 HOH A 566 SITE 5 AC3 17 HOH A 582 CRYST1 41.732 70.660 78.743 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023962 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012700 0.00000