HEADER HYDROLASE 28-MAY-15 5BPL TITLE CRYSTAL STRUCTURE OF ADP AND PI BOUND HUMAN HSP70 NBD MUTANT R272K. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK 70 KDA PROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEAT SHOCK 70 KDA PROTEIN 1,HSP70.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSPA1A, HSPA1, HSX70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B+ KEYWDS HYDROLASE, ATP HYDROLYSIS ACTIVITY EXPDTA X-RAY DIFFRACTION AUTHOR D.NARAYANAN,R.A.ENGH REVDAT 2 10-JAN-24 5BPL 1 LINK REVDAT 1 14-SEP-16 5BPL 0 JRNL AUTH D.NARAYANAN,A.PFLUG,T.CHRISTOPEIT,P.KYOMUHENDO,R.A.ENGH JRNL TITL NUCLEOTIDE BINDING TO VARIANTS OF THE HSP70-NBD. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 31818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.290 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5366 - 4.6401 0.95 2237 150 0.1609 0.1892 REMARK 3 2 4.6401 - 3.6834 0.97 2182 147 0.1429 0.2063 REMARK 3 3 3.6834 - 3.2179 0.98 2173 145 0.1662 0.2248 REMARK 3 4 3.2179 - 2.9238 0.99 2154 145 0.1904 0.2320 REMARK 3 5 2.9238 - 2.7142 0.98 2139 143 0.1833 0.2440 REMARK 3 6 2.7142 - 2.5542 0.98 2139 144 0.1864 0.2615 REMARK 3 7 2.5542 - 2.4263 0.98 2129 142 0.1886 0.2873 REMARK 3 8 2.4263 - 2.3207 0.98 2128 143 0.1957 0.2400 REMARK 3 9 2.3207 - 2.2313 0.98 2127 143 0.2188 0.2914 REMARK 3 10 2.2313 - 2.1543 0.98 2115 142 0.2041 0.2413 REMARK 3 11 2.1543 - 2.0870 0.98 2096 140 0.2114 0.2887 REMARK 3 12 2.0870 - 2.0273 0.97 2100 141 0.2325 0.3048 REMARK 3 13 2.0273 - 1.9740 0.98 2092 141 0.2384 0.2695 REMARK 3 14 1.9740 - 1.9258 0.94 2007 134 0.2589 0.3010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3033 REMARK 3 ANGLE : 1.044 4106 REMARK 3 CHIRALITY : 0.041 462 REMARK 3 PLANARITY : 0.005 529 REMARK 3 DIHEDRAL : 14.812 1121 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3213 71.9879 16.3902 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.2199 REMARK 3 T33: 0.1737 T12: -0.0036 REMARK 3 T13: 0.0012 T23: 0.0819 REMARK 3 L TENSOR REMARK 3 L11: 1.3048 L22: 2.1603 REMARK 3 L33: 2.0097 L12: 0.5223 REMARK 3 L13: 0.2573 L23: 0.8946 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: 0.0357 S13: -0.0354 REMARK 3 S21: -0.0674 S22: 0.1122 S23: 0.3793 REMARK 3 S31: -0.0779 S32: -0.4700 S33: -0.1223 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2995 75.3615 32.9097 REMARK 3 T TENSOR REMARK 3 T11: 0.2168 T22: 0.1574 REMARK 3 T33: 0.1293 T12: -0.0187 REMARK 3 T13: 0.0273 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.2147 L22: 1.1847 REMARK 3 L33: 1.6603 L12: -0.1968 REMARK 3 L13: 0.0708 L23: -0.1802 REMARK 3 S TENSOR REMARK 3 S11: 0.0595 S12: -0.1536 S13: 0.1308 REMARK 3 S21: 0.2857 S22: -0.0023 S23: -0.0522 REMARK 3 S31: -0.3044 S32: 0.0858 S33: -0.0501 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3350 65.8877 17.3892 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.0977 REMARK 3 T33: 0.1352 T12: -0.0080 REMARK 3 T13: 0.0020 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.3403 L22: 0.7543 REMARK 3 L33: 1.5906 L12: 0.0112 REMARK 3 L13: -0.0752 L23: -0.4466 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: -0.0583 S13: -0.1456 REMARK 3 S21: 0.0010 S22: 0.0926 S23: 0.0762 REMARK 3 S31: 0.1602 S32: -0.0977 S33: -0.0165 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.9007 95.2789 23.1799 REMARK 3 T TENSOR REMARK 3 T11: 0.3295 T22: 0.2819 REMARK 3 T33: 0.2746 T12: -0.0442 REMARK 3 T13: 0.0990 T23: -0.0873 REMARK 3 L TENSOR REMARK 3 L11: 0.6704 L22: 1.6546 REMARK 3 L33: 2.1722 L12: 0.2883 REMARK 3 L13: 0.2160 L23: 1.2103 REMARK 3 S TENSOR REMARK 3 S11: 0.1714 S12: -0.3829 S13: 0.3776 REMARK 3 S21: 0.3134 S22: -0.1873 S23: 0.2300 REMARK 3 S31: -0.3874 S32: -0.2086 S33: 0.0319 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.6404 77.3035 5.5157 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.1330 REMARK 3 T33: 0.1266 T12: 0.0162 REMARK 3 T13: 0.0016 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.8355 L22: 0.7439 REMARK 3 L33: 1.2787 L12: 0.8739 REMARK 3 L13: -0.1588 L23: -0.0461 REMARK 3 S TENSOR REMARK 3 S11: -0.0312 S12: 0.0682 S13: -0.0387 REMARK 3 S21: -0.0278 S22: 0.0895 S23: 0.0176 REMARK 3 S31: -0.0728 S32: 0.0450 S33: -0.0499 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31889 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 47.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.14100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.84300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0 REMARK 200 STARTING MODEL: 3ATV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG-3350 W/V, 0.1 M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.01850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.89900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.66350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.89900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.01850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.66350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 383 REMARK 465 LYS A 384 REMARK 465 SER A 385 REMARK 465 GLU A 386 REMARK 465 ASN A 387 REMARK 465 VAL A 388 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 61 CD1 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 GLN A 279 CG CD OE1 NE2 REMARK 470 LEU A 282 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 743 O HOH A 846 2.09 REMARK 500 O HOH A 632 O HOH A 790 2.10 REMARK 500 O HOH A 768 O HOH A 794 2.13 REMARK 500 O HOH A 626 O HOH A 762 2.17 REMARK 500 NH1 ARG A 262 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 22 147.00 -170.78 REMARK 500 ASN A 62 52.84 -141.40 REMARK 500 LYS A 361 13.85 -140.01 REMARK 500 ASN A 364 118.86 -37.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 TYR A 15 O 116.9 REMARK 620 3 ADP A 401 O2B 134.0 96.1 REMARK 620 4 HOH A 545 O 76.8 110.4 61.4 REMARK 620 5 HOH A 567 O 84.3 158.1 63.1 67.0 REMARK 620 6 HOH A 644 O 93.4 86.2 121.4 163.1 98.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 204 OG1 REMARK 620 2 ADP A 401 O1B 133.2 REMARK 620 3 PO4 A 402 O4 48.8 111.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 401 O2B REMARK 620 2 PO4 A 402 O1 99.0 REMARK 620 3 HOH A 533 O 170.7 89.6 REMARK 620 4 HOH A 545 O 85.2 94.8 90.4 REMARK 620 5 HOH A 559 O 96.3 85.0 88.0 178.4 REMARK 620 6 HOH A 567 O 75.1 166.6 97.2 96.6 83.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BN8 RELATED DB: PDB REMARK 900 5BN8 CONTAINS THE SAME PROTEIN IN APO STATE. REMARK 900 RELATED ID: 5BN9 RELATED DB: PDB REMARK 900 5BN9 CONTAINS THE SAME PROTEIN SINGLE MUTANT (R272K) COMPLEXED WITH REMARK 900 ADP. REMARK 900 RELATED ID: 5BPM RELATED DB: PDB REMARK 900 5BPM CONTAINS THE SAME PROTEIN DOUBLE MUTANT (E268Q+R272K) REMARK 900 COMPLEXED WITH UNHYDROLYSED ATP. REMARK 900 RELATED ID: 5BPN RELATED DB: PDB REMARK 900 5BPN CONTAINS THE SAME PROTEIN DOUBLE MUTANT (E268Q+R272K) IN APO REMARK 900 STATE. DBREF 5BPL A 1 388 UNP P0DMV8 HS71A_HUMAN 1 388 SEQADV 5BPL LYS A 272 UNP P0DMV8 ARG 272 ENGINEERED MUTATION SEQRES 1 A 388 MET ALA LYS ALA ALA ALA ILE GLY ILE ASP LEU GLY THR SEQRES 2 A 388 THR TYR SER CYS VAL GLY VAL PHE GLN HIS GLY LYS VAL SEQRES 3 A 388 GLU ILE ILE ALA ASN ASP GLN GLY ASN ARG THR THR PRO SEQRES 4 A 388 SER TYR VAL ALA PHE THR ASP THR GLU ARG LEU ILE GLY SEQRES 5 A 388 ASP ALA ALA LYS ASN GLN VAL ALA LEU ASN PRO GLN ASN SEQRES 6 A 388 THR VAL PHE ASP ALA LYS ARG LEU ILE GLY ARG LYS PHE SEQRES 7 A 388 GLY ASP PRO VAL VAL GLN SER ASP MET LYS HIS TRP PRO SEQRES 8 A 388 PHE GLN VAL ILE ASN ASP GLY ASP LYS PRO LYS VAL GLN SEQRES 9 A 388 VAL SER TYR LYS GLY GLU THR LYS ALA PHE TYR PRO GLU SEQRES 10 A 388 GLU ILE SER SER MET VAL LEU THR LYS MET LYS GLU ILE SEQRES 11 A 388 ALA GLU ALA TYR LEU GLY TYR PRO VAL THR ASN ALA VAL SEQRES 12 A 388 ILE THR VAL PRO ALA TYR PHE ASN ASP SER GLN ARG GLN SEQRES 13 A 388 ALA THR LYS ASP ALA GLY VAL ILE ALA GLY LEU ASN VAL SEQRES 14 A 388 LEU ARG ILE ILE ASN GLU PRO THR ALA ALA ALA ILE ALA SEQRES 15 A 388 TYR GLY LEU ASP ARG THR GLY LYS GLY GLU ARG ASN VAL SEQRES 16 A 388 LEU ILE PHE ASP LEU GLY GLY GLY THR PHE ASP VAL SER SEQRES 17 A 388 ILE LEU THR ILE ASP ASP GLY ILE PHE GLU VAL LYS ALA SEQRES 18 A 388 THR ALA GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP SEQRES 19 A 388 ASN ARG LEU VAL ASN HIS PHE VAL GLU GLU PHE LYS ARG SEQRES 20 A 388 LYS HIS LYS LYS ASP ILE SER GLN ASN LYS ARG ALA VAL SEQRES 21 A 388 ARG ARG LEU ARG THR ALA CYS GLU ARG ALA LYS LYS THR SEQRES 22 A 388 LEU SER SER SER THR GLN ALA SER LEU GLU ILE ASP SER SEQRES 23 A 388 LEU PHE GLU GLY ILE ASP PHE TYR THR SER ILE THR ARG SEQRES 24 A 388 ALA ARG PHE GLU GLU LEU CYS SER ASP LEU PHE ARG SER SEQRES 25 A 388 THR LEU GLU PRO VAL GLU LYS ALA LEU ARG ASP ALA LYS SEQRES 26 A 388 LEU ASP LYS ALA GLN ILE HIS ASP LEU VAL LEU VAL GLY SEQRES 27 A 388 GLY SER THR ARG ILE PRO LYS VAL GLN LYS LEU LEU GLN SEQRES 28 A 388 ASP PHE PHE ASN GLY ARG ASP LEU ASN LYS SER ILE ASN SEQRES 29 A 388 PRO ASP GLU ALA VAL ALA TYR GLY ALA ALA VAL GLN ALA SEQRES 30 A 388 ALA ILE LEU MET GLY ASP LYS SER GLU ASN VAL HET ADP A 401 39 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET MG A 405 1 HET NA A 406 1 HET NA A 407 1 HET EPE A 408 32 HET CL A 409 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM CL CHLORIDE ION HETSYN EPE HEPES FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 MG MG 2+ FORMUL 7 NA 2(NA 1+) FORMUL 9 EPE C8 H18 N2 O4 S FORMUL 10 CL CL 1- FORMUL 11 HOH *352(H2 O) HELIX 1 AA1 GLY A 52 GLN A 58 1 7 HELIX 2 AA2 ASP A 69 LEU A 73 5 5 HELIX 3 AA3 ASP A 80 LYS A 88 1 9 HELIX 4 AA4 TYR A 115 GLY A 136 1 22 HELIX 5 AA5 ASN A 151 ALA A 165 1 15 HELIX 6 AA6 GLU A 175 TYR A 183 1 9 HELIX 7 AA7 GLY A 184 THR A 188 5 5 HELIX 8 AA8 GLY A 229 LYS A 250 1 22 HELIX 9 AA9 ASN A 256 LEU A 274 1 19 HELIX 10 AB1 ARG A 299 CYS A 306 1 8 HELIX 11 AB2 CYS A 306 SER A 312 1 7 HELIX 12 AB3 THR A 313 ALA A 324 1 12 HELIX 13 AB4 ASP A 327 ILE A 331 5 5 HELIX 14 AB5 GLY A 338 ARG A 342 5 5 HELIX 15 AB6 ILE A 343 PHE A 354 1 12 HELIX 16 AB7 GLU A 367 GLY A 382 1 16 SHEET 1 AA1 3 LYS A 25 ILE A 28 0 SHEET 2 AA1 3 TYR A 15 GLN A 22 -1 N GLN A 22 O LYS A 25 SHEET 3 AA1 3 THR A 38 PRO A 39 -1 O THR A 38 N SER A 16 SHEET 1 AA2 5 LYS A 25 ILE A 28 0 SHEET 2 AA2 5 TYR A 15 GLN A 22 -1 N GLN A 22 O LYS A 25 SHEET 3 AA2 5 ILE A 7 ASP A 10 -1 N ASP A 10 O CYS A 17 SHEET 4 AA2 5 ASN A 141 VAL A 146 1 O VAL A 143 N ILE A 9 SHEET 5 AA2 5 ASN A 168 ASN A 174 1 O LEU A 170 N ALA A 142 SHEET 1 AA3 3 ARG A 49 ILE A 51 0 SHEET 2 AA3 3 VAL A 42 PHE A 44 -1 N ALA A 43 O LEU A 50 SHEET 3 AA3 3 THR A 66 VAL A 67 -1 O VAL A 67 N VAL A 42 SHEET 1 AA4 3 GLN A 93 ASN A 96 0 SHEET 2 AA4 3 PRO A 101 TYR A 107 -1 O LYS A 102 N ILE A 95 SHEET 3 AA4 3 GLU A 110 PHE A 114 -1 O GLU A 110 N TYR A 107 SHEET 1 AA5 4 ILE A 216 ASP A 225 0 SHEET 2 AA5 4 PHE A 205 ASP A 213 -1 N VAL A 207 O ALA A 223 SHEET 3 AA5 4 ARG A 193 LEU A 200 -1 N ILE A 197 O SER A 208 SHEET 4 AA5 4 ASP A 333 VAL A 337 1 O ASP A 333 N LEU A 196 SHEET 1 AA6 2 GLN A 279 PHE A 288 0 SHEET 2 AA6 2 ILE A 291 THR A 298 -1 O PHE A 293 N ILE A 284 LINK OD2 ASP A 10 NA NA A 406 1555 1555 2.24 LINK O TYR A 15 NA NA A 406 1555 1555 2.58 LINK OG1 THR A 204 NA NA A 407 1555 1555 3.08 LINK O2B ADP A 401 MG MG A 405 1555 1555 2.11 LINK O2B ADP A 401 NA NA A 406 1555 1555 2.32 LINK O1B ADP A 401 NA NA A 407 1555 1555 2.45 LINK O1 PO4 A 402 MG MG A 405 1555 1555 2.15 LINK O4 PO4 A 402 NA NA A 407 1555 1555 2.75 LINK MG MG A 405 O HOH A 533 1555 1555 2.15 LINK MG MG A 405 O HOH A 545 1555 1555 2.17 LINK MG MG A 405 O HOH A 559 1555 1555 2.13 LINK MG MG A 405 O HOH A 567 1555 1555 2.16 LINK NA NA A 406 O HOH A 545 1555 1555 3.17 LINK NA NA A 406 O HOH A 567 1555 1555 2.63 LINK NA NA A 406 O HOH A 644 1555 1555 2.43 SITE 1 AC1 26 THR A 13 THR A 14 TYR A 15 GLY A 201 SITE 2 AC1 26 GLY A 202 GLY A 230 GLU A 268 LYS A 271 SITE 3 AC1 26 LYS A 272 SER A 275 GLY A 338 GLY A 339 SITE 4 AC1 26 SER A 340 ARG A 342 ASP A 366 PO4 A 402 SITE 5 AC1 26 MG A 405 NA A 406 NA A 407 HOH A 542 SITE 6 AC1 26 HOH A 544 HOH A 545 HOH A 567 HOH A 627 SITE 7 AC1 26 HOH A 644 HOH A 687 SITE 1 AC2 13 GLY A 12 THR A 13 LYS A 71 GLU A 175 SITE 2 AC2 13 THR A 204 ADP A 401 MG A 405 NA A 407 SITE 3 AC2 13 CL A 409 HOH A 533 HOH A 534 HOH A 545 SITE 4 AC2 13 HOH A 559 SITE 1 AC3 5 LEU A 50 ILE A 51 ALA A 54 LYS A 126 SITE 2 AC3 5 HOH A 710 SITE 1 AC4 4 GLU A 304 SER A 307 ASP A 308 HOH A 516 SITE 1 AC5 7 ADP A 401 PO4 A 402 NA A 406 HOH A 533 SITE 2 AC5 7 HOH A 545 HOH A 559 HOH A 567 SITE 1 AC6 6 ASP A 10 TYR A 15 ADP A 401 MG A 405 SITE 2 AC6 6 HOH A 567 HOH A 644 SITE 1 AC7 5 GLY A 202 GLY A 203 THR A 204 ADP A 401 SITE 2 AC7 5 PO4 A 402 SITE 1 AC8 8 ASN A 57 GLN A 58 LEU A 61 TYR A 115 SITE 2 AC8 8 GLU A 117 ARG A 258 HOH A 646 HOH A 733 SITE 1 AC9 4 ASP A 199 THR A 204 ASP A 206 PO4 A 402 CRYST1 46.037 63.327 143.798 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006954 0.00000