HEADER TRANSCRIPTION 28-MAY-15 5BPR OBSLTE 16-NOV-16 5BPR 5KCW TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN TITLE 2 COMPLEX WITH AN N-TRIFLUOROETHYL OBHS-N DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, UNP RESIDUES 303-549; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR-INTERACTING PEPTIDE; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 687-696; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG,Z.LIAO, AUTHOR 2 V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN,O.ELEMENTO, AUTHOR 3 J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES REVDAT 2 16-NOV-16 5BPR 1 OBSLTE REVDAT 1 01-JUN-16 5BPR 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG, JRNL AUTH 2 Z.LIAO,V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN, JRNL AUTH 3 O.ELEMENTO,J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES JRNL TITL PREDICTING PROLIFERATIVE EFFECTS OF ESTROGEN RECEPTOR JRNL TITL 2 LIGANDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1690 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 35010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8065 - 4.4767 0.94 2692 155 0.1617 0.2016 REMARK 3 2 4.4767 - 3.5540 0.87 2486 133 0.1677 0.2398 REMARK 3 3 3.5540 - 3.1049 0.95 2643 155 0.2090 0.2570 REMARK 3 4 3.1049 - 2.8211 0.98 2736 161 0.2052 0.2844 REMARK 3 5 2.8211 - 2.6189 0.97 2724 151 0.2008 0.2314 REMARK 3 6 2.6189 - 2.4645 0.96 2676 154 0.2012 0.2670 REMARK 3 7 2.4645 - 2.3411 0.96 2692 159 0.1996 0.2602 REMARK 3 8 2.3411 - 2.2392 0.94 2615 145 0.2065 0.2944 REMARK 3 9 2.2392 - 2.1530 0.87 2444 127 0.2119 0.3021 REMARK 3 10 2.1530 - 2.0787 0.89 2481 144 0.2199 0.3067 REMARK 3 11 2.0787 - 2.0137 0.86 2391 144 0.2347 0.2766 REMARK 3 12 2.0137 - 1.9562 0.82 2288 132 0.2546 0.2727 REMARK 3 13 1.9562 - 1.9047 0.82 2253 129 0.2841 0.3211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3942 REMARK 3 ANGLE : 1.052 5350 REMARK 3 CHIRALITY : 0.041 626 REMARK 3 PLANARITY : 0.004 657 REMARK 3 DIHEDRAL : 14.511 1465 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 304:412) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4321 -19.1097 0.7295 REMARK 3 T TENSOR REMARK 3 T11: 0.3825 T22: 0.2948 REMARK 3 T33: 0.2798 T12: -0.0355 REMARK 3 T13: 0.0295 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 3.5317 L22: 1.1770 REMARK 3 L33: 3.7545 L12: 0.4762 REMARK 3 L13: -1.2515 L23: -1.0414 REMARK 3 S TENSOR REMARK 3 S11: -0.1119 S12: -0.1481 S13: -0.0144 REMARK 3 S21: 0.0616 S22: -0.0806 S23: 0.1581 REMARK 3 S31: 0.0974 S32: -0.0896 S33: 0.1419 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 413:473) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4886 -23.1997 -6.3167 REMARK 3 T TENSOR REMARK 3 T11: 0.4379 T22: 0.3240 REMARK 3 T33: 0.3014 T12: 0.0006 REMARK 3 T13: 0.0707 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 3.6105 L22: 5.1640 REMARK 3 L33: 3.7877 L12: 1.5653 REMARK 3 L13: -0.9183 L23: 0.0815 REMARK 3 S TENSOR REMARK 3 S11: -0.1434 S12: 0.0427 S13: -0.2633 REMARK 3 S21: 0.1823 S22: -0.0326 S23: 0.0820 REMARK 3 S31: 0.3470 S32: 0.0100 S33: 0.1394 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 474:548) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8597 -17.7703 -8.5761 REMARK 3 T TENSOR REMARK 3 T11: 0.4733 T22: 0.2788 REMARK 3 T33: 0.2811 T12: -0.0541 REMARK 3 T13: 0.0140 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 4.5724 L22: 2.4837 REMARK 3 L33: 3.6267 L12: 0.0747 REMARK 3 L13: -0.6446 L23: -0.5238 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: 0.0757 S13: 0.0166 REMARK 3 S21: 0.1141 S22: -0.0873 S23: 0.1766 REMARK 3 S31: 0.0400 S32: -0.1115 S33: -0.0384 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 305:420) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5011 -19.2843 -33.8449 REMARK 3 T TENSOR REMARK 3 T11: 0.2474 T22: 0.2736 REMARK 3 T33: 0.2313 T12: -0.0149 REMARK 3 T13: 0.0599 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 2.4930 L22: 3.9117 REMARK 3 L33: 5.7125 L12: 1.0458 REMARK 3 L13: -0.4770 L23: 0.1803 REMARK 3 S TENSOR REMARK 3 S11: -0.1345 S12: 0.2439 S13: -0.1042 REMARK 3 S21: -0.1499 S22: 0.0150 S23: 0.0031 REMARK 3 S31: 0.1079 S32: -0.2265 S33: 0.1083 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 421:493) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6524 -16.7974 -21.3279 REMARK 3 T TENSOR REMARK 3 T11: 0.3763 T22: 0.3485 REMARK 3 T33: 0.2892 T12: 0.0129 REMARK 3 T13: 0.0105 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 3.2629 L22: 1.9976 REMARK 3 L33: 5.4574 L12: 0.1850 REMARK 3 L13: 0.0187 L23: 0.0258 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: -0.0707 S13: -0.0167 REMARK 3 S21: 0.2942 S22: -0.0263 S23: -0.0766 REMARK 3 S31: 0.0350 S32: 0.2898 S33: 0.0568 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 494:548) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9001 -18.7593 -22.0023 REMARK 3 T TENSOR REMARK 3 T11: 0.3351 T22: 0.2549 REMARK 3 T33: 0.2897 T12: 0.0002 REMARK 3 T13: 0.0380 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 2.3955 L22: 1.9114 REMARK 3 L33: 5.8782 L12: 0.3472 REMARK 3 L13: -0.2756 L23: 0.7604 REMARK 3 S TENSOR REMARK 3 S11: -0.2184 S12: -0.0973 S13: 0.1057 REMARK 3 S21: -0.1135 S22: -0.1722 S23: 0.3286 REMARK 3 S31: 0.1650 S32: -0.5293 S33: 0.1760 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37387 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2QA8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.76450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 303 REMARK 465 ASP A 332 REMARK 465 PRO A 333 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 GLU A 470 REMARK 465 GLU A 471 REMARK 465 LEU A 549 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 VAL B 418 REMARK 465 GLU B 419 REMARK 465 PHE B 461 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 LEU B 466 REMARK 465 LYS B 467 REMARK 465 SER B 468 REMARK 465 LEU B 469 REMARK 465 SER B 527 REMARK 465 MET B 528 REMARK 465 LYS B 529 REMARK 465 CYS B 530 REMARK 465 LYS B 531 REMARK 465 ASN B 532 REMARK 465 VAL B 533 REMARK 465 VAL B 534 REMARK 465 LEU B 549 REMARK 465 HIS D 687 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 304 CG OD1 ND2 REMARK 470 LEU A 306 CG CD1 CD2 REMARK 470 TYR A 331 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 334 OG1 CG2 REMARK 470 ARG A 335 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 414 CG CD OE1 NE2 REMARK 470 VAL A 418 CG1 CG2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 MET A 421 CG SD CE REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 PHE B 337 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 414 CG CD OE1 NE2 REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 LYS B 472 CG CD CE NZ REMARK 470 ARG B 548 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 687 CG ND1 CD2 CE1 NE2 REMARK 470 ASP D 696 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 359 O HOH A 701 1.82 REMARK 500 NH2 ARG B 352 O HOH B 701 2.00 REMARK 500 O HOH C 702 O HOH C 703 2.14 REMARK 500 O HOH A 718 O HOH A 763 2.16 REMARK 500 N GLU B 397 O HOH B 702 2.19 REMARK 500 O HOH A 770 O HOH B 767 2.19 REMARK 500 O HOH A 725 O HOH A 769 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 735 O HOH B 769 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 333 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 398 72.83 -119.00 REMARK 500 CYS A 530 49.26 -76.17 REMARK 500 LYS A 531 95.47 173.50 REMARK 500 ASN A 532 64.92 -60.21 REMARK 500 PRO B 333 29.53 -58.43 REMARK 500 PHE B 337 66.16 -61.53 REMARK 500 LYS B 416 12.06 47.25 REMARK 500 LEU B 536 113.24 63.26 REMARK 500 ALA B 546 8.37 -68.57 REMARK 500 LYS C 688 131.43 49.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OB9 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OB9 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OB9 B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PP6 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH RESVERATROL REMARK 900 RELATED ID: 4ZN7 RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH REMARK 900 DIETHYLSTILBESTROL REMARK 900 RELATED ID: 4ZN9 RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH OXABICYCLIC REMARK 900 HEPTENE SULFONATE REMARK 900 RELATED ID: 4ZNH RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 2-FLUORO- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZNS RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 3-FLUORO- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZNT RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 3-BROMO- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZNU RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 2-METHYL- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZNV RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 2-METHOXY- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZNW RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH A 4-BROMO- REMARK 900 SUBSTITUTED OBHS DERIVATIVE REMARK 900 RELATED ID: 4ZUB RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH OXABICYCLIC REMARK 900 HEPTENE SULFONAMIDE (OBHS-N) REMARK 900 RELATED ID: 4ZUC RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH AN N-METHYL REMARK 900 SUBSTITUTED OBHS-N DERIVATIVE REMARK 900 RELATED ID: 4ZWH RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH AN N-METHYL, REMARK 900 2-CHLOROBENZYL OBHS-N DERIVATIVE REMARK 900 RELATED ID: 4ZWK RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH AN N-ETHYL, REMARK 900 4-METHOXYBENZYL OBHS-N DERIVATIVE REMARK 900 RELATED ID: 5BNU RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH AN N-ETHYL, REMARK 900 4-CHLOROBENZYL OBHS-N DERIVATIVE REMARK 900 RELATED ID: 5BP6 RELATED DB: PDB REMARK 900 ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN COMPLEX WITH AN N-ETHYL, REMARK 900 ALPHA-NAPHTHYL OBHS-N DERIVATIVE DBREF 5BPR A 303 549 UNP P03372 ESR1_HUMAN 303 549 DBREF 5BPR B 303 549 UNP P03372 ESR1_HUMAN 303 549 DBREF 5BPR C 687 696 UNP Q15596 NCOA2_HUMAN 687 696 DBREF 5BPR D 687 696 UNP Q15596 NCOA2_HUMAN 687 696 SEQADV 5BPR SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5BPR SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 247 LYS ASN SER LEU ALA LEU SER LEU THR ALA ASP GLN MET SEQRES 2 A 247 VAL SER ALA LEU LEU ASP ALA GLU PRO PRO ILE LEU TYR SEQRES 3 A 247 SER GLU TYR ASP PRO THR ARG PRO PHE SER GLU ALA SER SEQRES 4 A 247 MET MET GLY LEU LEU THR ASN LEU ALA ASP ARG GLU LEU SEQRES 5 A 247 VAL HIS MET ILE ASN TRP ALA LYS ARG VAL PRO GLY PHE SEQRES 6 A 247 VAL ASP LEU THR LEU HIS ASP GLN VAL HIS LEU LEU GLU SEQRES 7 A 247 CYS ALA TRP LEU GLU ILE LEU MET ILE GLY LEU VAL TRP SEQRES 8 A 247 ARG SER MET GLU HIS PRO GLY LYS LEU LEU PHE ALA PRO SEQRES 9 A 247 ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS CYS VAL GLU SEQRES 10 A 247 GLY MET VAL GLU ILE PHE ASP MET LEU LEU ALA THR SER SEQRES 11 A 247 SER ARG PHE ARG MET MET ASN LEU GLN GLY GLU GLU PHE SEQRES 12 A 247 VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SER GLY VAL SEQRES 13 A 247 TYR THR PHE LEU SER SER THR LEU LYS SER LEU GLU GLU SEQRES 14 A 247 LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS ILE THR ASP SEQRES 15 A 247 THR LEU ILE HIS LEU MET ALA LYS ALA GLY LEU THR LEU SEQRES 16 A 247 GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU LEU LEU ILE SEQRES 17 A 247 LEU SER HIS ILE ARG HIS MET SER ASN LYS GLY MET GLU SEQRES 18 A 247 HIS LEU TYR SER MET LYS CYS LYS ASN VAL VAL PRO LEU SEQRES 19 A 247 SER ASP LEU LEU LEU GLU MET LEU ASP ALA HIS ARG LEU SEQRES 1 B 247 LYS ASN SER LEU ALA LEU SER LEU THR ALA ASP GLN MET SEQRES 2 B 247 VAL SER ALA LEU LEU ASP ALA GLU PRO PRO ILE LEU TYR SEQRES 3 B 247 SER GLU TYR ASP PRO THR ARG PRO PHE SER GLU ALA SER SEQRES 4 B 247 MET MET GLY LEU LEU THR ASN LEU ALA ASP ARG GLU LEU SEQRES 5 B 247 VAL HIS MET ILE ASN TRP ALA LYS ARG VAL PRO GLY PHE SEQRES 6 B 247 VAL ASP LEU THR LEU HIS ASP GLN VAL HIS LEU LEU GLU SEQRES 7 B 247 CYS ALA TRP LEU GLU ILE LEU MET ILE GLY LEU VAL TRP SEQRES 8 B 247 ARG SER MET GLU HIS PRO GLY LYS LEU LEU PHE ALA PRO SEQRES 9 B 247 ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS CYS VAL GLU SEQRES 10 B 247 GLY MET VAL GLU ILE PHE ASP MET LEU LEU ALA THR SER SEQRES 11 B 247 SER ARG PHE ARG MET MET ASN LEU GLN GLY GLU GLU PHE SEQRES 12 B 247 VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SER GLY VAL SEQRES 13 B 247 TYR THR PHE LEU SER SER THR LEU LYS SER LEU GLU GLU SEQRES 14 B 247 LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS ILE THR ASP SEQRES 15 B 247 THR LEU ILE HIS LEU MET ALA LYS ALA GLY LEU THR LEU SEQRES 16 B 247 GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU LEU LEU ILE SEQRES 17 B 247 LEU SER HIS ILE ARG HIS MET SER ASN LYS GLY MET GLU SEQRES 18 B 247 HIS LEU TYR SER MET LYS CYS LYS ASN VAL VAL PRO LEU SEQRES 19 B 247 SER ASP LEU LEU LEU GLU MET LEU ASP ALA HIS ARG LEU SEQRES 1 C 10 HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SEQRES 1 D 10 HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP HET OB9 A 601 36 HET OB9 B 601 36 HET OB9 B 602 36 HETNAM OB9 (1S,2R,4S)-5,6-BIS(4-HYDROXYPHENYL)-N-PHENYL-N-(2,2,2- HETNAM 2 OB9 TRIFLUOROETHYL)-7-OXABICYCLO[2.2.1]HEPT-5-ENE-2- HETNAM 3 OB9 SULFONAMIDE FORMUL 5 OB9 3(C26 H22 F3 N O5 S) FORMUL 8 HOH *150(H2 O) HELIX 1 AA1 SER A 305 SER A 309 5 5 HELIX 2 AA2 THR A 311 GLU A 323 1 13 HELIX 3 AA3 SER A 338 LYS A 362 1 25 HELIX 4 AA4 GLY A 366 LEU A 370 5 5 HELIX 5 AA5 THR A 371 MET A 396 1 26 HELIX 6 AA6 ASP A 411 LYS A 416 1 6 HELIX 7 AA7 GLY A 420 MET A 438 1 19 HELIX 8 AA8 GLN A 441 SER A 456 1 16 HELIX 9 AA9 GLY A 457 PHE A 461 5 5 HELIX 10 AB1 ASP A 473 ALA A 493 1 21 HELIX 11 AB2 THR A 496 CYS A 530 1 35 HELIX 12 AB3 SER A 537 ALA A 546 1 10 HELIX 13 AB4 HIS A 547 ARG A 548 5 2 HELIX 14 AB5 SER B 305 SER B 309 5 5 HELIX 15 AB6 THR B 311 ALA B 322 1 12 HELIX 16 AB7 SER B 338 LYS B 362 1 25 HELIX 17 AB8 GLY B 366 LEU B 370 5 5 HELIX 18 AB9 THR B 371 SER B 395 1 25 HELIX 19 AC1 MET B 421 MET B 438 1 18 HELIX 20 AC2 GLN B 441 SER B 456 1 16 HELIX 21 AC3 GLU B 471 ALA B 493 1 23 HELIX 22 AC4 THR B 496 TYR B 526 1 31 HELIX 23 AC5 SER B 537 ASP B 545 1 9 HELIX 24 AC6 ALA B 546 ARG B 548 5 3 HELIX 25 AC7 LYS C 688 ASP C 696 1 9 HELIX 26 AC8 ILE D 689 GLN D 695 1 7 SHEET 1 AA1 2 LEU A 402 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 LEU A 410 -1 O LEU A 410 N LEU A 402 SHEET 1 AA2 2 LYS B 401 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 ASP B 411 -1 O LEU B 410 N LEU B 402 CISPEP 1 ARG A 335 PRO A 336 0 0.09 SITE 1 AC1 14 MET A 343 THR A 347 ALA A 350 GLU A 353 SITE 2 AC1 14 LEU A 387 MET A 388 ARG A 394 GLU A 419 SITE 3 AC1 14 MET A 421 ILE A 424 GLY A 521 HIS A 524 SITE 4 AC1 14 LEU A 525 HOH A 716 SITE 1 AC2 15 MET B 343 LEU B 346 THR B 347 ALA B 350 SITE 2 AC2 15 GLU B 353 LEU B 387 MET B 388 ARG B 394 SITE 3 AC2 15 MET B 421 GLY B 521 HIS B 524 LEU B 525 SITE 4 AC2 15 LEU B 540 OB9 B 602 HOH B 729 SITE 1 AC3 15 MET B 343 LEU B 346 THR B 347 ALA B 350 SITE 2 AC3 15 GLU B 353 LEU B 387 MET B 388 ARG B 394 SITE 3 AC3 15 MET B 421 GLY B 521 HIS B 524 LEU B 525 SITE 4 AC3 15 LEU B 540 OB9 B 601 HOH B 729 CRYST1 55.627 81.529 58.976 90.00 110.93 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017977 0.000000 0.006875 0.00000 SCALE2 0.000000 0.012266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018154 0.00000