HEADER CELL CYCLE 28-MAY-15 5BPW TITLE ATOMIC-RESOLUTION STRUCTURES OF THE APC/C SUBUNITS APC4 AND THE APC5 TITLE 2 N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANAPHASE-PROMOTING COMPLEX SUBUNIT 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APC4,CYCLOSOME SUBUNIT 4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ANAPC4, APC4; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS APC4, APC/C, ANAPHASE PROMOTING COMPLEX, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR K.KULKARNI,J.YANG,Z.ZHANG,D.BARFORD REVDAT 4 08-MAY-24 5BPW 1 REMARK REVDAT 3 07-OCT-15 5BPW 1 JRNL REVDAT 2 23-SEP-15 5BPW 1 JRNL REVDAT 1 02-SEP-15 5BPW 0 JRNL AUTH N.B.CRONIN,J.YANG,Z.ZHANG,K.KULKARNI,L.CHANG,H.YAMANO, JRNL AUTH 2 D.BARFORD JRNL TITL ATOMIC-RESOLUTION STRUCTURES OF THE APC/C SUBUNITS APC4 AND JRNL TITL 2 THE APC5 N-TERMINAL DOMAIN. JRNL REF J.MOL.BIOL. V. 427 3300 2015 JRNL REFN ESSN 1089-8638 JRNL PMID 26343760 JRNL DOI 10.1016/J.JMB.2015.08.023 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.240 REMARK 3 FREE R VALUE TEST SET COUNT : 700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.9492 - 5.8118 0.99 4374 148 0.2140 0.2755 REMARK 3 2 5.8118 - 4.6139 1.00 4224 136 0.1935 0.2290 REMARK 3 3 4.6139 - 4.0310 1.00 4138 142 0.2035 0.2625 REMARK 3 4 4.0310 - 3.6625 1.00 4107 146 0.2474 0.3100 REMARK 3 5 3.6625 - 3.4001 0.99 4088 128 0.2870 0.3622 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5183 REMARK 3 ANGLE : 1.828 7025 REMARK 3 CHIRALITY : 0.074 833 REMARK 3 PLANARITY : 0.008 878 REMARK 3 DIHEDRAL : 16.970 1854 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21671 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 57.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.18200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIN NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: APC4 CRYSTALS WERE GROWN BY VAPOUR REMARK 280 -DIFFUSION IN A BUFFER CONTAINING 10 MM MALIC ACID, 20 MM MES, REMARK 280 20 MM TRIS.HCL (PH 8.0), 160 MM NDSB 196, 10 MM EDTA AND 19% (V/ REMARK 280 V) PEG 1500. CRYSTALS WERE INCUBATED IN A CRYOPROTECTION BUFFER REMARK 280 COMPRISING 10 MM MALIC ACID, 20 MM MES, 20 MM TRIS.HCL (PH 8.0), REMARK 280 160 MM NDSB 196, 10 MM EDTA, 22% (V/V) PEG 1500 AND 20% (V/V) REMARK 280 ETHYLENE GLYCOL PRIOR TO FREEZING IN LIQUID NITROGEN., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 69.59050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.59050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.59050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 69.59050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.59050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.59050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 69.59050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.59050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ARG A 3 REMARK 465 PHE A 4 REMARK 465 PRO A 5 REMARK 465 ASN A 130 REMARK 465 ALA A 131 REMARK 465 THR A 288 REMARK 465 LYS A 289 REMARK 465 PHE A 290 REMARK 465 VAL A 291 REMARK 465 GLN A 292 REMARK 465 GLU A 293 REMARK 465 PHE A 304 REMARK 465 MET A 305 REMARK 465 HIS A 306 REMARK 465 LEU A 307 REMARK 465 LEU A 308 REMARK 465 LEU A 309 REMARK 465 TRP A 310 REMARK 465 GLY A 311 REMARK 465 LYS A 312 REMARK 465 ALA A 313 REMARK 465 SER A 314 REMARK 465 ALA A 315 REMARK 465 GLU A 316 REMARK 465 LEU A 317 REMARK 465 ASP A 431 REMARK 465 HIS A 432 REMARK 465 VAL A 433 REMARK 465 LEU A 434 REMARK 465 PRO A 435 REMARK 465 GLU A 436 REMARK 465 LEU A 437 REMARK 465 ASN A 438 REMARK 465 LYS A 439 REMARK 465 MET A 440 REMARK 465 THR A 441 REMARK 465 GLN A 442 REMARK 465 LYS A 443 REMARK 465 ASP A 444 REMARK 465 GLU A 458 REMARK 465 ALA A 459 REMARK 465 PRO A 460 REMARK 465 ASP A 461 REMARK 465 LEU A 462 REMARK 465 TYR A 463 REMARK 465 ASN A 464 REMARK 465 ARG A 465 REMARK 465 LYS A 466 REMARK 465 GLY A 467 REMARK 465 LYS A 468 REMARK 465 TYR A 469 REMARK 465 PHE A 470 REMARK 465 ASN A 471 REMARK 465 VAL A 472 REMARK 465 LYS A 480 REMARK 465 ASP A 481 REMARK 465 GLU A 482 REMARK 465 ASP A 483 REMARK 465 ASP A 484 REMARK 465 ASP A 485 REMARK 465 LEU A 486 REMARK 465 VAL A 487 REMARK 465 SER A 488 REMARK 465 PRO A 489 REMARK 465 PRO A 490 REMARK 465 ASN A 491 REMARK 465 THR A 492 REMARK 465 GLU A 493 REMARK 465 GLY A 494 REMARK 465 ASN A 495 REMARK 465 GLN A 496 REMARK 465 TRP A 497 REMARK 465 TYR A 498 REMARK 465 ASP A 499 REMARK 465 PHE A 500 REMARK 465 LEU A 501 REMARK 465 GLN A 502 REMARK 465 ASN A 503 REMARK 465 SER A 504 REMARK 465 SER A 505 REMARK 465 HIS A 506 REMARK 465 LEU A 507 REMARK 465 LYS A 508 REMARK 465 GLU A 509 REMARK 465 SER A 510 REMARK 465 PRO A 511 REMARK 465 LEU A 512 REMARK 465 LEU A 513 REMARK 465 PHE A 514 REMARK 465 PRO A 515 REMARK 465 TYR A 516 REMARK 465 TYR A 517 REMARK 465 PRO A 518 REMARK 465 ARG A 519 REMARK 465 LYS A 520 REMARK 465 SER A 521 REMARK 465 SER A 758 REMARK 465 ASP A 759 REMARK 465 GLU A 760 REMARK 465 GLU A 761 REMARK 465 GLU A 762 REMARK 465 GLU A 763 REMARK 465 ALA A 764 REMARK 465 SER A 765 REMARK 465 ASN A 766 REMARK 465 LYS A 767 REMARK 465 PRO A 768 REMARK 465 VAL A 769 REMARK 465 LYS A 770 REMARK 465 ILE A 771 REMARK 465 LYS A 772 REMARK 465 GLU A 773 REMARK 465 GLU A 774 REMARK 465 VAL A 775 REMARK 465 LEU A 776 REMARK 465 SER A 777 REMARK 465 GLU A 778 REMARK 465 SER A 779 REMARK 465 GLU A 780 REMARK 465 ALA A 781 REMARK 465 GLU A 782 REMARK 465 ASN A 783 REMARK 465 GLN A 784 REMARK 465 GLN A 785 REMARK 465 ALA A 786 REMARK 465 GLY A 787 REMARK 465 ALA A 788 REMARK 465 ALA A 789 REMARK 465 ALA A 790 REMARK 465 LEU A 791 REMARK 465 ALA A 792 REMARK 465 PRO A 793 REMARK 465 GLU A 794 REMARK 465 ILE A 795 REMARK 465 VAL A 796 REMARK 465 ILE A 797 REMARK 465 LYS A 798 REMARK 465 VAL A 799 REMARK 465 GLU A 800 REMARK 465 LYS A 801 REMARK 465 LEU A 802 REMARK 465 ASP A 803 REMARK 465 PRO A 804 REMARK 465 GLU A 805 REMARK 465 LEU A 806 REMARK 465 ASP A 807 REMARK 465 SER A 808 REMARK 465 GLU A 809 REMARK 465 ASN A 810 REMARK 465 LEU A 811 REMARK 465 TYR A 812 REMARK 465 PHE A 813 REMARK 465 GLN A 814 REMARK 465 SER A 815 REMARK 465 TRP A 816 REMARK 465 SER A 817 REMARK 465 HIS A 818 REMARK 465 PRO A 819 REMARK 465 GLN A 820 REMARK 465 PHE A 821 REMARK 465 GLU A 822 REMARK 465 LYS A 823 REMARK 465 GLY A 824 REMARK 465 GLY A 825 REMARK 465 GLY A 826 REMARK 465 SER A 827 REMARK 465 GLY A 828 REMARK 465 GLY A 829 REMARK 465 GLY A 830 REMARK 465 SER A 831 REMARK 465 GLY A 832 REMARK 465 GLY A 833 REMARK 465 GLY A 834 REMARK 465 SER A 835 REMARK 465 TRP A 836 REMARK 465 SER A 837 REMARK 465 HIS A 838 REMARK 465 PRO A 839 REMARK 465 GLN A 840 REMARK 465 PHE A 841 REMARK 465 GLU A 842 REMARK 465 LYS A 843 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 128 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 129 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 132 CD OE1 OE2 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 ASN A 148 CG OD1 ND2 REMARK 470 TYR A 149 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 151 CG OD1 ND2 REMARK 470 THR A 152 OG1 CG2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 ASN A 160 CG OD1 ND2 REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 MET A 281 CG SD CE REMARK 470 GLN A 282 CD OE1 NE2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 GLN A 318 CG CD OE1 NE2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 GLN A 374 CG CD OE1 NE2 REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 GLU A 402 CG CD OE1 OE2 REMARK 470 MET A 411 CG SD CE REMARK 470 LYS A 412 CG CD CE NZ REMARK 470 PHE A 418 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 427 CD NE CZ NH1 NH2 REMARK 470 MET A 428 CG SD CE REMARK 470 GLU A 450 CG CD OE1 OE2 REMARK 470 PHE A 451 CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 452 CG CD1 CD2 REMARK 470 GLU A 454 CG CD OE1 OE2 REMARK 470 HIS A 455 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 456 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 477 CG CD OE1 NE2 REMARK 470 TYR A 478 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 479 CG CD1 CD2 REMARK 470 LEU A 522 CG CD1 CD2 REMARK 470 ARG A 567 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 659 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 660 CG CD OE1 OE2 REMARK 470 ARG A 662 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 756 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 453 ND2 ASN A 457 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 446 OG1 THR A 446 7737 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 236 CB - CG - CD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 LEU A 321 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 PRO A 378 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 LEU A 381 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 52 61.04 39.40 REMARK 500 ASN A 61 -167.60 -169.99 REMARK 500 PRO A 109 152.67 -49.02 REMARK 500 ASN A 151 -116.44 56.73 REMARK 500 ILE A 155 -61.89 -130.59 REMARK 500 TYR A 190 -1.50 66.05 REMARK 500 MET A 192 -63.56 -130.29 REMARK 500 TYR A 242 -71.58 -76.03 REMARK 500 GLN A 324 -63.85 -131.71 REMARK 500 HIS A 351 -65.23 -97.13 REMARK 500 GLU A 377 59.84 -115.43 REMARK 500 THR A 429 -76.39 -107.32 REMARK 500 HIS A 523 -68.43 -90.51 REMARK 500 LEU A 556 -64.38 -102.55 REMARK 500 LEU A 569 -13.85 75.04 REMARK 500 ASN A 582 70.98 52.90 REMARK 500 GLU A 592 -75.73 -107.84 REMARK 500 GLU A 678 -72.12 -76.32 REMARK 500 HIS A 710 70.55 54.81 REMARK 500 LYS A 718 2.27 83.11 REMARK 500 GLN A 720 -57.26 -122.21 REMARK 500 PHE A 727 -70.70 -95.59 REMARK 500 LEU A 738 -2.33 67.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 320 LEU A 321 128.32 REMARK 500 GLU A 377 PRO A 378 128.69 REMARK 500 HIS A 523 PHE A 524 -147.75 REMARK 500 GLU A 629 LYS A 630 149.23 REMARK 500 GLY A 658 ARG A 659 -143.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 5BPW A 1 808 UNP Q9UJX5 APC4_HUMAN 1 808 SEQADV 5BPW GLU A 809 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW ASN A 810 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW LEU A 811 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW TYR A 812 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW PHE A 813 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLN A 814 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW SER A 815 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW TRP A 816 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW SER A 817 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW HIS A 818 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW PRO A 819 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLN A 820 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW PHE A 821 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLU A 822 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW LYS A 823 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLY A 824 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLY A 825 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLY A 826 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW SER A 827 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLY A 828 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLY A 829 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLY A 830 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW SER A 831 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLY A 832 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLY A 833 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLY A 834 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW SER A 835 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW TRP A 836 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW SER A 837 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW HIS A 838 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW PRO A 839 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLN A 840 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW PHE A 841 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW GLU A 842 UNP Q9UJX5 EXPRESSION TAG SEQADV 5BPW LYS A 843 UNP Q9UJX5 EXPRESSION TAG SEQRES 1 A 843 MET LEU ARG PHE PRO THR CYS PHE PRO SER PHE ARG VAL SEQRES 2 A 843 VAL GLY GLU LYS GLN LEU PRO GLN GLU ILE ILE PHE LEU SEQRES 3 A 843 VAL TRP SER PRO LYS ARG ASP LEU ILE ALA LEU ALA ASN SEQRES 4 A 843 THR ALA GLY GLU VAL LEU LEU HIS ARG LEU ALA SER PHE SEQRES 5 A 843 HIS ARG VAL TRP SER PHE PRO PRO ASN GLU ASN THR GLY SEQRES 6 A 843 LYS GLU VAL THR CYS LEU ALA TRP ARG PRO ASP GLY LYS SEQRES 7 A 843 LEU LEU ALA PHE ALA LEU ALA ASP THR LYS LYS ILE VAL SEQRES 8 A 843 LEU CYS ASP VAL GLU LYS PRO GLU SER LEU HIS SER PHE SEQRES 9 A 843 SER VAL GLU ALA PRO VAL SER CYS MET HIS TRP MET GLU SEQRES 10 A 843 VAL THR VAL GLU SER SER VAL LEU THR SER PHE TYR ASN SEQRES 11 A 843 ALA GLU ASP GLU SER ASN LEU LEU LEU PRO LYS LEU PRO SEQRES 12 A 843 THR LEU PRO LYS ASN TYR SER ASN THR SER LYS ILE PHE SEQRES 13 A 843 SER GLU GLU ASN SER ASP GLU ILE ILE LYS LEU LEU GLY SEQRES 14 A 843 ASP VAL ARG LEU ASN ILE LEU VAL LEU GLY GLY SER SER SEQRES 15 A 843 GLY PHE ILE GLU LEU TYR ALA TYR GLY MET PHE LYS ILE SEQRES 16 A 843 ALA ARG VAL THR GLY ILE ALA GLY THR CYS LEU ALA LEU SEQRES 17 A 843 CYS LEU SER SER ASP LEU LYS SER LEU SER VAL VAL THR SEQRES 18 A 843 GLU VAL SER THR ASN GLY ALA SER GLU VAL SER TYR PHE SEQRES 19 A 843 GLN LEU GLU THR ASN LEU LEU TYR SER PHE LEU PRO GLU SEQRES 20 A 843 VAL THR ARG MET ALA ARG LYS PHE THR HIS ILE SER ALA SEQRES 21 A 843 LEU LEU GLN TYR ILE ASN LEU SER LEU THR CYS MET CYS SEQRES 22 A 843 GLU ALA TRP GLU GLU ILE LEU MET GLN MET ASP SER ARG SEQRES 23 A 843 LEU THR LYS PHE VAL GLN GLU LYS ASN THR THR THR SER SEQRES 24 A 843 VAL GLN ASP GLU PHE MET HIS LEU LEU LEU TRP GLY LYS SEQRES 25 A 843 ALA SER ALA GLU LEU GLN THR LEU LEU MET ASN GLN LEU SEQRES 26 A 843 THR VAL LYS GLY LEU LYS LYS LEU GLY GLN SER ILE GLU SEQRES 27 A 843 SER SER TYR SER SER ILE GLN LYS LEU VAL ILE SER HIS SEQRES 28 A 843 LEU GLN SER GLY SER GLU SER LEU LEU TYR HIS LEU SER SEQRES 29 A 843 GLU LEU LYS GLY MET ALA SER TRP LYS GLN LYS TYR GLU SEQRES 30 A 843 PRO LEU GLY LEU ASP ALA ALA GLY ILE GLU GLU ALA ILE SEQRES 31 A 843 THR ALA VAL GLY SER PHE ILE LEU LYS ALA ASN GLU LEU SEQRES 32 A 843 LEU GLN VAL ILE ASP SER SER MET LYS ASN PHE LYS ALA SEQRES 33 A 843 PHE PHE ARG TRP LEU TYR VAL ALA MET LEU ARG MET THR SEQRES 34 A 843 GLU ASP HIS VAL LEU PRO GLU LEU ASN LYS MET THR GLN SEQRES 35 A 843 LYS ASP ILE THR PHE VAL ALA GLU PHE LEU THR GLU HIS SEQRES 36 A 843 PHE ASN GLU ALA PRO ASP LEU TYR ASN ARG LYS GLY LYS SEQRES 37 A 843 TYR PHE ASN VAL GLU ARG VAL GLY GLN TYR LEU LYS ASP SEQRES 38 A 843 GLU ASP ASP ASP LEU VAL SER PRO PRO ASN THR GLU GLY SEQRES 39 A 843 ASN GLN TRP TYR ASP PHE LEU GLN ASN SER SER HIS LEU SEQRES 40 A 843 LYS GLU SER PRO LEU LEU PHE PRO TYR TYR PRO ARG LYS SEQRES 41 A 843 SER LEU HIS PHE VAL LYS ARG ARG MET GLU ASN ILE ILE SEQRES 42 A 843 ASP GLN CYS LEU GLN LYS PRO ALA ASP VAL ILE GLY LYS SEQRES 43 A 843 SER MET ASN GLN ALA ILE CYS ILE PRO LEU TYR ARG ASP SEQRES 44 A 843 THR ARG SER GLU ASP SER THR ARG ARG LEU PHE LYS PHE SEQRES 45 A 843 PRO PHE LEU TRP ASN ASN LYS THR SER ASN LEU HIS TYR SEQRES 46 A 843 LEU LEU PHE THR ILE LEU GLU ASP SER LEU TYR LYS MET SEQRES 47 A 843 CYS ILE LEU ARG ARG HIS THR ASP ILE SER GLN SER VAL SEQRES 48 A 843 SER ASN GLY LEU ILE ALA ILE LYS PHE GLY SER PHE THR SEQRES 49 A 843 TYR ALA THR THR GLU LYS VAL ARG ARG SER ILE TYR SER SEQRES 50 A 843 CYS LEU ASP ALA GLN PHE TYR ASP ASP GLU THR VAL THR SEQRES 51 A 843 VAL VAL LEU LYS ASP THR VAL GLY ARG GLU GLY ARG ASP SEQRES 52 A 843 ARG LEU LEU VAL GLN LEU PRO LEU SER LEU VAL TYR ASN SEQRES 53 A 843 SER GLU ASP SER ALA GLU TYR GLN PHE THR GLY THR TYR SEQRES 54 A 843 SER THR ARG LEU ASP GLU GLN CYS SER ALA ILE PRO THR SEQRES 55 A 843 ARG THR MET HIS PHE GLU LYS HIS TRP ARG LEU LEU GLU SEQRES 56 A 843 SER MET LYS ALA GLN TYR VAL ALA GLY ASN GLY PHE ARG SEQRES 57 A 843 LYS VAL SER CYS VAL LEU SER SER ASN LEU ARG HIS VAL SEQRES 58 A 843 ARG VAL PHE GLU MET ASP ILE ASP ASP GLU TRP GLU LEU SEQRES 59 A 843 ASP GLU SER SER ASP GLU GLU GLU GLU ALA SER ASN LYS SEQRES 60 A 843 PRO VAL LYS ILE LYS GLU GLU VAL LEU SER GLU SER GLU SEQRES 61 A 843 ALA GLU ASN GLN GLN ALA GLY ALA ALA ALA LEU ALA PRO SEQRES 62 A 843 GLU ILE VAL ILE LYS VAL GLU LYS LEU ASP PRO GLU LEU SEQRES 63 A 843 ASP SER GLU ASN LEU TYR PHE GLN SER TRP SER HIS PRO SEQRES 64 A 843 GLN PHE GLU LYS GLY GLY GLY SER GLY GLY GLY SER GLY SEQRES 65 A 843 GLY GLY SER TRP SER HIS PRO GLN PHE GLU LYS HELIX 1 AA1 ALA A 50 PHE A 52 5 3 HELIX 2 AA2 ASP A 133 LEU A 137 1 5 HELIX 3 AA3 SER A 161 ASP A 170 1 10 HELIX 4 AA4 THR A 238 PHE A 244 1 7 HELIX 5 AA5 PHE A 244 SER A 285 1 42 HELIX 6 AA6 THR A 326 HIS A 351 1 26 HELIX 7 AA7 HIS A 351 SER A 371 1 21 HELIX 8 AA8 TRP A 372 GLU A 377 1 6 HELIX 9 AA9 ASP A 382 ARG A 427 1 46 HELIX 10 AB1 PHE A 447 ASN A 457 1 11 HELIX 11 AB2 ARG A 474 LEU A 479 1 6 HELIX 12 AB3 VAL A 525 MET A 548 1 24 HELIX 13 AB4 SER A 672 VAL A 674 5 3 HELIX 14 AB5 GLU A 678 TYR A 683 5 6 SHEET 1 AA1 4 ARG A 12 GLN A 18 0 SHEET 2 AA1 4 HIS A 740 GLU A 745 -1 O VAL A 743 N GLY A 15 SHEET 3 AA1 4 VAL A 730 LEU A 734 -1 N VAL A 733 O ARG A 742 SHEET 4 AA1 4 TYR A 721 GLY A 724 -1 N ALA A 723 O CYS A 732 SHEET 1 AA2 4 ILE A 23 TRP A 28 0 SHEET 2 AA2 4 LEU A 34 ASN A 39 -1 O ALA A 36 N VAL A 27 SHEET 3 AA2 4 VAL A 44 ARG A 48 -1 O LEU A 45 N LEU A 37 SHEET 4 AA2 4 ARG A 54 PHE A 58 -1 O VAL A 55 N LEU A 46 SHEET 1 AA3 4 VAL A 68 TRP A 73 0 SHEET 2 AA3 4 LEU A 79 LEU A 84 -1 O ALA A 81 N ALA A 72 SHEET 3 AA3 4 LYS A 89 ASP A 94 -1 O LYS A 89 N LEU A 84 SHEET 4 AA3 4 SER A 100 SER A 105 -1 O HIS A 102 N LEU A 92 SHEET 1 AA4 4 CYS A 112 GLU A 117 0 SHEET 2 AA4 4 ASN A 174 GLY A 179 -1 O VAL A 177 N HIS A 114 SHEET 3 AA4 4 PHE A 184 ALA A 189 -1 O GLU A 186 N LEU A 178 SHEET 4 AA4 4 LYS A 194 THR A 199 -1 O VAL A 198 N ILE A 185 SHEET 1 AA5 4 THR A 204 LEU A 210 0 SHEET 2 AA5 4 SER A 216 VAL A 223 -1 O SER A 218 N CYS A 209 SHEET 3 AA5 4 SER A 229 GLU A 237 -1 O LEU A 236 N LEU A 217 SHEET 4 AA5 4 ALA A 551 ASP A 559 -1 O ILE A 554 N TYR A 233 SHEET 1 AA6 5 PHE A 574 ASN A 578 0 SHEET 2 AA6 5 LEU A 583 LEU A 591 -1 O TYR A 585 N TRP A 576 SHEET 3 AA6 5 TYR A 596 HIS A 604 -1 O CYS A 599 N PHE A 588 SHEET 4 AA6 5 LEU A 615 THR A 624 -1 O ILE A 616 N ILE A 600 SHEET 5 AA6 5 VAL A 631 ARG A 632 -1 O ARG A 632 N PHE A 623 SHEET 1 AA7 5 PHE A 574 ASN A 578 0 SHEET 2 AA7 5 LEU A 583 LEU A 591 -1 O TYR A 585 N TRP A 576 SHEET 3 AA7 5 TYR A 596 HIS A 604 -1 O CYS A 599 N PHE A 588 SHEET 4 AA7 5 LEU A 615 THR A 624 -1 O ILE A 616 N ILE A 600 SHEET 5 AA7 5 THR A 702 PHE A 707 1 O PHE A 707 N SER A 622 SHEET 1 AA8 4 TYR A 636 ASP A 645 0 SHEET 2 AA8 4 THR A 648 ASP A 655 -1 O LYS A 654 N SER A 637 SHEET 3 AA8 4 ARG A 664 PRO A 670 -1 O VAL A 667 N VAL A 651 SHEET 4 AA8 4 TRP A 711 LEU A 713 -1 O ARG A 712 N LEU A 666 CISPEP 1 PHE A 572 PRO A 573 0 -1.42 CRYST1 139.181 139.181 156.106 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006406 0.00000