HEADER MEMBRANE PROTEIN/ANTIBIOTIC 28-MAY-15 5BQ6 TITLE STRUCTURE OF THE YEAST F1FO ATPASE C10 RING WITH OLIGOMYCIN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C, D, E, K, L, M, N, O; COMPND 4 SYNONYM: LIPID-BINDING PROTEIN, OLIGOMYCIN RESISTANCE PROTEIN 1; COMPND 5 EC: 3.6.-.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS C10 RING, F1FO ATP SYNTHASE, OLIGOMYCIN B, MITOCHONDRIA, MEMBRANE, KEYWDS 2 PROTEIN-ANTIBIOTIC COMPLEX, MEMBRANE PROTEIN-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.SYMERSKY,T.XU,D.M.MUELLER REVDAT 4 27-SEP-23 5BQ6 1 REMARK REVDAT 3 27-NOV-19 5BQ6 1 REMARK REVDAT 2 06-SEP-17 5BQ6 1 REMARK REVDAT 1 26-AUG-15 5BQ6 0 JRNL AUTH D.M.MUELLER JRNL TITL STRUCTURE OF THE YEAST F1FO ATPASE C10 RING WITH OLIGOMYCIN JRNL TITL 2 B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.SYMERSKY,D.OSOWSKI,D.E.WALTERS,D.M.MUELLER REMARK 1 TITL OLIGOMYCIN FRAMES A COMMON DRUG-BINDING SITE IN THE ATP REMARK 1 TITL 2 SYNTHASE. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 109 13961 2012 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 22869738 REMARK 1 DOI 10.1073/PNAS.1207912109 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 30963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1657 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1962 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5297 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 399 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -2.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.420 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.456 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5849 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7960 ; 1.324 ; 2.069 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 747 ; 4.108 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;37.519 ;23.101 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 857 ;14.308 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 9.781 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1074 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3939 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 48.4850 8.4711 31.9502 REMARK 3 T TENSOR REMARK 3 T11: 0.0400 T22: 0.0671 REMARK 3 T33: 0.1000 T12: 0.0173 REMARK 3 T13: -0.0230 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.7152 L22: 0.8544 REMARK 3 L33: 19.3871 L12: 0.0497 REMARK 3 L13: -1.8278 L23: -1.1256 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.1942 S13: 0.1388 REMARK 3 S21: 0.1761 S22: 0.0788 S23: -0.0343 REMARK 3 S31: -0.1132 S32: 0.3212 S33: -0.0717 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9957 16.3168 27.9998 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.1483 REMARK 3 T33: 0.1770 T12: -0.0140 REMARK 3 T13: -0.0191 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4799 L22: 0.5991 REMARK 3 L33: 20.7841 L12: -0.2549 REMARK 3 L13: -1.1629 L23: -1.0034 REMARK 3 S TENSOR REMARK 3 S11: -0.1287 S12: -0.1965 S13: 0.0041 REMARK 3 S21: 0.2170 S22: -0.0582 S23: -0.0870 REMARK 3 S31: -0.3189 S32: 0.8953 S33: 0.1870 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 41 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5214 12.9050 31.9533 REMARK 3 T TENSOR REMARK 3 T11: 0.0649 T22: 0.0501 REMARK 3 T33: 0.1063 T12: 0.0036 REMARK 3 T13: 0.0155 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.8024 L22: 0.9498 REMARK 3 L33: 19.9099 L12: -0.0676 REMARK 3 L13: -0.6973 L23: -2.5740 REMARK 3 S TENSOR REMARK 3 S11: 0.0697 S12: -0.1853 S13: 0.1682 REMARK 3 S21: 0.1833 S22: 0.0844 S23: 0.0466 REMARK 3 S31: -0.1341 S32: 0.1505 S33: -0.1541 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9056 20.8342 28.4849 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.1248 REMARK 3 T33: 0.1792 T12: -0.0160 REMARK 3 T13: 0.0085 T23: -0.0590 REMARK 3 L TENSOR REMARK 3 L11: 0.6070 L22: 0.9352 REMARK 3 L33: 17.1270 L12: -0.3694 REMARK 3 L13: 0.1606 L23: -1.8473 REMARK 3 S TENSOR REMARK 3 S11: -0.0977 S12: -0.2092 S13: 0.1530 REMARK 3 S21: 0.2437 S22: -0.0625 S23: -0.0025 REMARK 3 S31: -0.7417 S32: 0.3699 S33: 0.1602 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 41 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2876 12.4275 32.0813 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.0712 REMARK 3 T33: 0.1215 T12: 0.0431 REMARK 3 T13: 0.0196 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.9155 L22: 0.6799 REMARK 3 L33: 20.6947 L12: -0.0168 REMARK 3 L13: 0.8193 L23: -2.1394 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: -0.1720 S13: 0.0712 REMARK 3 S21: 0.2257 S22: 0.1010 S23: 0.1014 REMARK 3 S31: -0.1242 S32: 0.1116 S33: -0.1779 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 42 C 75 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5874 17.2299 28.5151 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1313 REMARK 3 T33: 0.1911 T12: 0.0064 REMARK 3 T13: 0.0201 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.6543 L22: 0.5471 REMARK 3 L33: 26.2689 L12: -0.2568 REMARK 3 L13: 1.4135 L23: -2.2140 REMARK 3 S TENSOR REMARK 3 S11: -0.2395 S12: -0.1771 S13: 0.0639 REMARK 3 S21: 0.2335 S22: -0.1080 S23: 0.0390 REMARK 3 S31: -0.8615 S32: -0.2362 S33: 0.3475 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 41 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9742 7.1409 31.9675 REMARK 3 T TENSOR REMARK 3 T11: 0.0572 T22: 0.1099 REMARK 3 T33: 0.0969 T12: 0.0279 REMARK 3 T13: 0.0264 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.7376 L22: 0.9284 REMARK 3 L33: 20.9843 L12: 0.2250 REMARK 3 L13: 0.7512 L23: -2.3043 REMARK 3 S TENSOR REMARK 3 S11: 0.1146 S12: -0.1460 S13: -0.0009 REMARK 3 S21: 0.2149 S22: 0.1463 S23: 0.1424 REMARK 3 S31: -0.2559 S32: -0.0324 S33: -0.2608 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 42 D 74 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7033 7.2288 28.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.1278 REMARK 3 T33: 0.1884 T12: 0.0634 REMARK 3 T13: 0.0430 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.4849 L22: 0.3205 REMARK 3 L33: 15.8086 L12: 0.3014 REMARK 3 L13: 0.7884 L23: -0.6229 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: -0.1647 S13: 0.0604 REMARK 3 S21: 0.1150 S22: -0.0251 S23: 0.0990 REMARK 3 S31: -0.4473 S32: -0.6502 S33: -0.0108 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 41 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8114 -0.8413 32.1210 REMARK 3 T TENSOR REMARK 3 T11: 0.0536 T22: 0.0826 REMARK 3 T33: 0.1065 T12: 0.0182 REMARK 3 T13: 0.0397 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 1.0603 L22: 0.6782 REMARK 3 L33: 24.2152 L12: -0.3407 REMARK 3 L13: 2.3074 L23: 0.1882 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: -0.2535 S13: -0.1110 REMARK 3 S21: 0.1569 S22: 0.1851 S23: 0.1540 REMARK 3 S31: 0.2565 S32: -0.1734 S33: -0.2277 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 42 E 74 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0874 -5.6411 28.1472 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: 0.1821 REMARK 3 T33: 0.2039 T12: 0.0136 REMARK 3 T13: 0.0009 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4613 L22: 0.7815 REMARK 3 L33: 24.7114 L12: -0.0734 REMARK 3 L13: 2.8125 L23: 0.2340 REMARK 3 S TENSOR REMARK 3 S11: -0.0799 S12: -0.2059 S13: 0.0599 REMARK 3 S21: 0.1893 S22: -0.1388 S23: 0.1201 REMARK 3 S31: 0.1013 S32: -1.0050 S33: 0.2187 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 1 K 41 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4787 27.8419 31.9536 REMARK 3 T TENSOR REMARK 3 T11: 0.1157 T22: 0.1738 REMARK 3 T33: 0.0941 T12: -0.1106 REMARK 3 T13: -0.0047 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.8500 L22: 1.1844 REMARK 3 L33: 15.5403 L12: 0.1191 REMARK 3 L13: 1.0902 L23: 1.6125 REMARK 3 S TENSOR REMARK 3 S11: 0.2379 S12: -0.3493 S13: -0.1169 REMARK 3 S21: 0.2379 S22: -0.0079 S23: 0.0326 REMARK 3 S31: 0.1728 S32: 0.1269 S33: -0.2300 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 42 K 75 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4622 19.6113 28.7114 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.2322 REMARK 3 T33: 0.1822 T12: -0.1016 REMARK 3 T13: 0.0060 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 0.4715 L22: 0.9583 REMARK 3 L33: 21.5775 L12: -0.2682 REMARK 3 L13: -0.0678 L23: 1.5520 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: -0.2108 S13: -0.0696 REMARK 3 S21: 0.2932 S22: -0.2155 S23: 0.0148 REMARK 3 S31: 0.3440 S32: -0.5675 S33: 0.2536 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 41 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8165 24.7994 32.2193 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.1770 REMARK 3 T33: 0.1376 T12: -0.1056 REMARK 3 T13: -0.0458 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 0.5925 L22: 1.0312 REMARK 3 L33: 22.7889 L12: 0.1429 REMARK 3 L13: 0.3704 L23: 2.3702 REMARK 3 S TENSOR REMARK 3 S11: 0.2415 S12: -0.3164 S13: -0.1263 REMARK 3 S21: 0.2846 S22: 0.0170 S23: -0.1032 REMARK 3 S31: 0.3216 S32: -0.0421 S33: -0.2584 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 42 L 75 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1426 17.5856 28.7939 REMARK 3 T TENSOR REMARK 3 T11: 0.2336 T22: 0.1642 REMARK 3 T33: 0.2339 T12: -0.0742 REMARK 3 T13: -0.0375 T23: 0.0694 REMARK 3 L TENSOR REMARK 3 L11: 0.9177 L22: 0.6778 REMARK 3 L33: 14.4391 L12: -0.1778 REMARK 3 L13: -1.2648 L23: 3.0643 REMARK 3 S TENSOR REMARK 3 S11: -0.2012 S12: -0.2615 S13: -0.1139 REMARK 3 S21: 0.2682 S22: -0.0988 S23: 0.0357 REMARK 3 S31: 1.0852 S32: -0.0830 S33: 0.3001 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 1 M 41 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1080 26.8896 32.2465 REMARK 3 T TENSOR REMARK 3 T11: 0.1397 T22: 0.1163 REMARK 3 T33: 0.1374 T12: -0.0749 REMARK 3 T13: -0.0639 T23: 0.0622 REMARK 3 L TENSOR REMARK 3 L11: 0.8409 L22: 0.6896 REMARK 3 L33: 18.1209 L12: 0.0723 REMARK 3 L13: -0.8960 L23: 2.9010 REMARK 3 S TENSOR REMARK 3 S11: 0.2268 S12: -0.3044 S13: -0.1120 REMARK 3 S21: 0.2231 S22: -0.0189 S23: -0.1285 REMARK 3 S31: 0.3822 S32: 0.3232 S33: -0.2079 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 42 M 75 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7075 23.5357 28.2312 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.1618 REMARK 3 T33: 0.1995 T12: -0.0192 REMARK 3 T13: -0.0267 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 1.0204 L22: 1.0957 REMARK 3 L33: 25.4889 L12: 0.1851 REMARK 3 L13: -0.5503 L23: 3.3592 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: -0.3844 S13: -0.1009 REMARK 3 S21: 0.3778 S22: -0.1434 S23: -0.0306 REMARK 3 S31: 1.0481 S32: 0.1718 S33: 0.1752 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 1 N 41 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4386 33.2608 32.5886 REMARK 3 T TENSOR REMARK 3 T11: 0.1307 T22: 0.1336 REMARK 3 T33: 0.1161 T12: -0.0549 REMARK 3 T13: -0.0565 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.9812 L22: 0.7166 REMARK 3 L33: 19.6063 L12: -0.0039 REMARK 3 L13: -1.6670 L23: 2.3298 REMARK 3 S TENSOR REMARK 3 S11: 0.1660 S12: -0.3099 S13: -0.0380 REMARK 3 S21: 0.2715 S22: -0.0020 S23: -0.1388 REMARK 3 S31: 0.6334 S32: -0.0130 S33: -0.1640 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 42 N 75 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5270 34.7430 28.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: 0.1527 REMARK 3 T33: 0.1761 T12: -0.0262 REMARK 3 T13: -0.0515 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 1.0450 L22: 0.8567 REMARK 3 L33: 15.7978 L12: 0.2731 REMARK 3 L13: -0.9244 L23: 1.2411 REMARK 3 S TENSOR REMARK 3 S11: 0.1135 S12: -0.3612 S13: -0.1142 REMARK 3 S21: 0.2421 S22: -0.0523 S23: -0.0688 REMARK 3 S31: 0.3945 S32: 0.9422 S33: -0.0612 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 2 O 41 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9164 41.4212 31.4303 REMARK 3 T TENSOR REMARK 3 T11: 0.0917 T22: 0.1406 REMARK 3 T33: 0.1054 T12: -0.0539 REMARK 3 T13: -0.0276 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.0517 L22: 0.7532 REMARK 3 L33: 14.1849 L12: 0.4335 REMARK 3 L13: -2.0536 L23: -0.7066 REMARK 3 S TENSOR REMARK 3 S11: 0.2164 S12: -0.2695 S13: 0.0522 REMARK 3 S21: 0.2098 S22: 0.0255 S23: -0.0951 REMARK 3 S31: 0.0827 S32: 0.0377 S33: -0.2420 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 42 O 75 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5546 47.5541 28.7303 REMARK 3 T TENSOR REMARK 3 T11: 0.1214 T22: 0.1937 REMARK 3 T33: 0.1784 T12: -0.0988 REMARK 3 T13: -0.0139 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.7514 L22: 0.6449 REMARK 3 L33: 17.3067 L12: 0.0731 REMARK 3 L13: -1.3890 L23: -0.1493 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.3093 S13: 0.0158 REMARK 3 S21: 0.2477 S22: -0.1843 S23: -0.0641 REMARK 3 S31: -0.1512 S32: 0.6182 S33: 0.1516 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5BQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32630 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.6.0117 REMARK 200 STARTING MODEL: PDB ENTRY 4F4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 68% MPD, 8% PROPYLENE GLYCOL, 0.3 M REMARK 280 SODIUM CHLORIDE, 2 MM MAGNESIUM SULFATE, 50 MM MES, PH 5.5, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.14650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 38.14650 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 244.27900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.14650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.13950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.14650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 366.41850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.14650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 366.41850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.14650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.13950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 38.14650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 38.14650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 244.27900 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 38.14650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 38.14650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 244.27900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 38.14650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 366.41850 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 38.14650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 122.13950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 38.14650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 122.13950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 38.14650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 366.41850 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 38.14650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 38.14650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 244.27900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -419.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 76.29300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -415.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L, M, N, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 76.29300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 75 REMARK 465 VAL A 76 REMARK 465 VAL B 76 REMARK 465 VAL C 76 REMARK 465 GLY D 75 REMARK 465 VAL D 76 REMARK 465 GLY E 75 REMARK 465 VAL E 76 REMARK 465 VAL K 76 REMARK 465 VAL L 76 REMARK 465 VAL M 76 REMARK 465 VAL N 76 REMARK 465 FME O 1 REMARK 465 VAL O 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 FME A 1 CG SD CE REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 FME B 1 CG SD CE REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 FME C 1 SD CE REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 FME D 1 CG SD CE REMARK 470 GLN D 2 CG CD OE1 NE2 REMARK 470 FME E 1 SD CE REMARK 470 GLN E 2 CG CD OE1 NE2 REMARK 470 FME K 1 CG SD CE REMARK 470 GLN K 2 CG CD OE1 NE2 REMARK 470 LEU K 5 CG CD1 CD2 REMARK 470 FME L 1 CG SD CE REMARK 470 GLN L 2 CG CD OE1 NE2 REMARK 470 FME M 1 CG SD CE REMARK 470 GLN M 2 CG CD OE1 NE2 REMARK 470 PHE M 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN N 2 CG CD OE1 NE2 REMARK 470 GLN O 2 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 FME B 1 CA - C - N ANGL. DEV. = 13.2 DEGREES REMARK 500 FME B 1 O - C - N ANGL. DEV. = -26.7 DEGREES REMARK 500 GLN B 2 C - N - CA ANGL. DEV. = 20.6 DEGREES REMARK 500 FME L 1 O - C - N ANGL. DEV. = -11.0 DEGREES REMARK 500 GLN L 2 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 FME N 1 CA - C - N ANGL. DEV. = 18.2 DEGREES REMARK 500 FME N 1 O - C - N ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN E 40 78.85 -150.02 REMARK 500 ASN L 40 78.07 -153.06 REMARK 500 PHE M 74 76.90 -104.15 REMARK 500 ASN O 40 78.56 -150.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 FME B 1 -31.21 REMARK 500 FME L 1 -13.53 REMARK 500 FME M 1 -15.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH M 209 DISTANCE = 7.02 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFB A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFB B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFB C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFB E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFB L 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFB M 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFB O 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BPS RELATED DB: PDB REMARK 900 RELATED ID: 5BQA RELATED DB: PDB REMARK 900 RELATED ID: 5BQJ RELATED DB: PDB DBREF 5BQ6 A 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQ6 B 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQ6 C 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQ6 D 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQ6 E 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQ6 K 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQ6 L 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQ6 M 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQ6 N 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQ6 O 2 76 UNP P61829 ATP9_YEAST 2 76 SEQADV 5BQ6 FME A 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQ6 FME B 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQ6 FME C 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQ6 FME D 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQ6 FME E 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQ6 FME K 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQ6 FME L 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQ6 FME M 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQ6 FME N 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQ6 FME O 1 UNP P61829 INITIATING METHIONINE SEQRES 1 A 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 A 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 A 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 A 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 A 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 A 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 B 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 B 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 B 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 B 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 B 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 B 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 C 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 C 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 C 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 C 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 C 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 C 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 D 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 D 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 D 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 D 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 D 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 D 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 E 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 E 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 E 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 E 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 E 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 E 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 K 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 K 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 K 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 K 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 K 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 K 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 L 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 L 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 L 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 L 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 L 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 L 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 M 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 M 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 M 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 M 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 M 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 M 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 N 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 N 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 N 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 N 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 N 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 N 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 O 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 O 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 O 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 O 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 O 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 O 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL HET FME A 1 7 HET FME B 1 7 HET FME C 1 8 HET FME D 1 7 HET FME E 1 8 HET FME K 1 7 HET FME L 1 7 HET FME M 1 7 HET FME N 1 10 HET EFB A 101 57 HET EFB B 101 57 HET EFB C 101 57 HET EFB E 101 57 HET EFB L 101 57 HET EFB M 101 57 HET EFB O 101 57 HETNAM FME N-FORMYLMETHIONINE HETNAM EFB OLIGOMYCIN B FORMUL 1 FME 9(C6 H11 N O3 S) FORMUL 11 EFB 7(C45 H72 O12) FORMUL 18 HOH *94(H2 O) HELIX 1 AA1 FME A 1 SER A 15 1 15 HELIX 2 AA2 GLY A 18 ASN A 40 1 23 HELIX 3 AA3 ILE A 43 PHE A 74 1 32 HELIX 4 AA4 GLN B 2 SER B 15 1 14 HELIX 5 AA5 GLY B 18 ASN B 40 1 23 HELIX 6 AA6 ILE B 43 PHE B 74 1 32 HELIX 7 AA7 GLN C 2 SER C 15 1 14 HELIX 8 AA8 GLY C 18 ASN C 40 1 23 HELIX 9 AA9 ILE C 43 PHE C 74 1 32 HELIX 10 AB1 GLN D 2 SER D 15 1 14 HELIX 11 AB2 GLY D 18 ASN D 40 1 23 HELIX 12 AB3 ILE D 43 PHE D 74 1 32 HELIX 13 AB4 GLN E 2 THR E 16 1 15 HELIX 14 AB5 GLY E 18 ASN E 40 1 23 HELIX 15 AB6 ILE E 43 PHE E 74 1 32 HELIX 16 AB7 GLN K 2 THR K 16 1 15 HELIX 17 AB8 GLY K 18 ASN K 40 1 23 HELIX 18 AB9 ILE K 43 GLY K 75 1 33 HELIX 19 AC1 GLN L 2 SER L 15 1 14 HELIX 20 AC2 GLY L 18 ASN L 40 1 23 HELIX 21 AC3 ILE L 43 GLY L 75 1 33 HELIX 22 AC4 GLN M 2 SER M 15 1 14 HELIX 23 AC5 GLY M 18 ASN M 40 1 23 HELIX 24 AC6 ILE M 43 PHE M 74 1 32 HELIX 25 AC7 GLN N 2 SER N 15 1 14 HELIX 26 AC8 GLY N 18 ASN N 40 1 23 HELIX 27 AC9 ILE N 43 PHE N 74 1 32 HELIX 28 AD1 LEU O 3 THR O 16 1 14 HELIX 29 AD2 GLY O 18 ASN O 40 1 23 HELIX 30 AD3 ILE O 43 PHE O 74 1 32 LINK C FME A 1 N GLN A 2 1555 1555 1.42 LINK C FME B 1 N GLN B 2 1555 1555 1.42 LINK C FME C 1 N GLN C 2 1555 1555 1.42 LINK C FME D 1 N GLN D 2 1555 1555 1.43 LINK C FME E 1 N GLN E 2 1555 1555 1.42 LINK C FME K 1 N GLN K 2 1555 1555 1.42 LINK C FME L 1 N GLN L 2 1555 1555 1.43 LINK C FME M 1 N GLN M 2 1555 1555 1.42 LINK C FME N 1 N GLN N 2 1555 1555 1.42 SITE 1 AC1 12 PHE A 55 ALA A 56 LEU A 63 ALA E 56 SITE 2 AC1 12 LEU E 57 ALA E 60 PHE E 64 ILE K 52 SITE 3 AC1 12 PHE K 55 ALA K 56 EFB L 101 LEU O 53 SITE 1 AC2 10 LEU A 53 LEU A 57 ALA A 60 PHE B 55 SITE 2 AC2 10 GLU B 59 LEU B 63 HOH B 201 HOH B 207 SITE 3 AC2 10 EFB C 101 EFB O 101 SITE 1 AC3 7 ALA B 56 ALA B 60 PHE B 64 EFB B 101 SITE 2 AC3 7 ALA C 56 LEU C 63 LEU C 66 SITE 1 AC4 6 ALA D 56 ALA D 60 PHE D 64 ALA E 56 SITE 2 AC4 6 GLU E 59 LEU E 63 SITE 1 AC5 9 EFB A 101 ALA K 56 LEU K 57 ALA K 60 SITE 2 AC5 9 PHE K 64 ALA L 56 GLU L 59 LEU L 63 SITE 3 AC5 9 EFB M 101 SITE 1 AC6 10 LEU C 53 PHE D 55 ALA L 56 ALA L 60 SITE 2 AC6 10 PHE L 64 EFB L 101 PHE M 55 ALA M 56 SITE 3 AC6 10 GLU M 59 LEU M 63 SITE 1 AC7 9 EFB B 101 HOH B 207 ALA N 56 ALA N 60 SITE 2 AC7 9 PHE O 55 ALA O 56 GLU O 59 LEU O 63 SITE 3 AC7 9 HOH O 201 CRYST1 76.293 76.293 488.558 90.00 90.00 90.00 I 41 2 2 160 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013107 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002047 0.00000 HETATM 1 N FME A 1 47.179 13.077 64.246 1.00 61.85 N ANISOU 1 N FME A 1 10910 7973 4615 -60 -60 -1464 N HETATM 2 CN FME A 1 45.941 13.031 63.744 1.00 61.12 C ANISOU 2 CN FME A 1 10838 7676 4706 447 97 -1368 C HETATM 3 O1 FME A 1 45.415 11.958 63.467 1.00 58.10 O ANISOU 3 O1 FME A 1 9949 7524 4603 713 87 -1232 O HETATM 4 CA FME A 1 48.336 13.223 63.374 1.00 61.29 C ANISOU 4 CA FME A 1 10672 8111 4503 -541 -197 -1509 C HETATM 5 CB FME A 1 49.598 13.433 64.206 1.00 64.12 C ANISOU 5 CB FME A 1 11002 8886 4472 -1140 -352 -1617 C HETATM 6 C FME A 1 48.520 12.036 62.471 1.00 56.99 C ANISOU 6 C FME A 1 9448 7895 4310 -326 -289 -1367 C HETATM 7 O FME A 1 48.542 12.236 61.236 1.00 56.31 O ANISOU 7 O FME A 1 9326 7702 4365 -361 -274 -1348 O