HEADER IMMUNE SYSTEM 28-MAY-15 5BQ7 TITLE CRYSTAL STRUCTURE OF CHIKUNGUNYA VIRUS-HUMAN FAB 5F-10 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB 5F-10-HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB 5F-10-LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293TPM1; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293TPM1 KEYWDS HUMAN ANTIBODY FAB FRAGMENT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.MANGALA PRASAD,M.G.ROSSMANN REVDAT 4 27-SEP-23 5BQ7 1 REMARK REVDAT 3 01-JAN-20 5BQ7 1 JRNL REMARK REVDAT 2 03-FEB-16 5BQ7 1 JRNL REVDAT 1 18-NOV-15 5BQ7 0 JRNL AUTH J.PORTA,V.MANGALA PRASAD,C.I.WANG,W.AKAHATA,L.F.NG, JRNL AUTH 2 M.G.ROSSMANN JRNL TITL STRUCTURAL STUDIES OF CHIKUNGUNYA VIRUS-LIKE PARTICLES JRNL TITL 2 COMPLEXED WITH HUMAN ANTIBODIES: NEUTRALIZATION AND JRNL TITL 3 CELL-TO-CELL TRANSMISSION. JRNL REF J.VIROL. V. 90 1169 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 26537684 JRNL DOI 10.1128/JVI.02364-15 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 11899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0120 - 5.4736 0.94 1438 162 0.2230 0.2755 REMARK 3 2 5.4736 - 4.3459 0.96 1373 153 0.1911 0.2183 REMARK 3 3 4.3459 - 3.7969 0.96 1376 150 0.2146 0.2711 REMARK 3 4 3.7969 - 3.4499 0.96 1340 151 0.2291 0.3335 REMARK 3 5 3.4499 - 3.2028 0.96 1337 142 0.2502 0.3201 REMARK 3 6 3.2028 - 3.0140 0.96 1324 147 0.2922 0.3307 REMARK 3 7 3.0140 - 2.8631 0.95 1306 144 0.2893 0.3747 REMARK 3 8 2.8631 - 2.7385 0.88 1223 133 0.2805 0.3223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3216 REMARK 3 ANGLE : 0.827 4379 REMARK 3 CHIRALITY : 0.030 503 REMARK 3 PLANARITY : 0.004 555 REMARK 3 DIHEDRAL : 14.480 1126 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1388 -13.4851 17.7481 REMARK 3 T TENSOR REMARK 3 T11: 0.2815 T22: 0.3142 REMARK 3 T33: 0.2149 T12: -0.0261 REMARK 3 T13: -0.0276 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 9.4991 L22: 2.1993 REMARK 3 L33: 2.4655 L12: -1.5091 REMARK 3 L13: -2.6609 L23: 0.3351 REMARK 3 S TENSOR REMARK 3 S11: 0.3153 S12: -0.4240 S13: -0.0587 REMARK 3 S21: 0.0575 S22: -0.3622 S23: -0.1964 REMARK 3 S31: -0.1070 S32: 0.4052 S33: 0.0049 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8070 -17.1110 6.9137 REMARK 3 T TENSOR REMARK 3 T11: 0.2824 T22: 0.4718 REMARK 3 T33: 0.2707 T12: 0.0623 REMARK 3 T13: -0.0679 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 3.8126 L22: 5.2089 REMARK 3 L33: 5.7854 L12: 0.6107 REMARK 3 L13: -0.9116 L23: -2.6765 REMARK 3 S TENSOR REMARK 3 S11: 0.0833 S12: 0.6281 S13: 0.2875 REMARK 3 S21: -0.4213 S22: -0.0998 S23: 0.3987 REMARK 3 S31: 0.3442 S32: -0.4085 S33: -0.0408 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9939 -18.7014 21.9328 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.2802 REMARK 3 T33: 0.2700 T12: 0.0310 REMARK 3 T13: -0.0525 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 4.0228 L22: 0.8637 REMARK 3 L33: 4.1069 L12: 1.0775 REMARK 3 L13: -3.4734 L23: -1.3946 REMARK 3 S TENSOR REMARK 3 S11: -0.0581 S12: 0.2738 S13: -0.0883 REMARK 3 S21: -0.1294 S22: -0.1079 S23: -0.0607 REMARK 3 S31: 0.0996 S32: -0.0066 S33: 0.1272 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3394 -24.9923 39.8344 REMARK 3 T TENSOR REMARK 3 T11: 0.0880 T22: 0.2046 REMARK 3 T33: 0.2049 T12: 0.0203 REMARK 3 T13: 0.0026 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.2482 L22: 4.3574 REMARK 3 L33: 5.3450 L12: 1.6124 REMARK 3 L13: -2.1325 L23: -0.8963 REMARK 3 S TENSOR REMARK 3 S11: -0.0559 S12: -0.0694 S13: 0.0047 REMARK 3 S21: -0.0635 S22: -0.0703 S23: -0.2162 REMARK 3 S31: -0.2227 S32: -0.0457 S33: 0.0500 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5896 -31.6444 53.6604 REMARK 3 T TENSOR REMARK 3 T11: 0.4260 T22: 0.5340 REMARK 3 T33: 0.3271 T12: 0.0918 REMARK 3 T13: 0.0982 T23: 0.1450 REMARK 3 L TENSOR REMARK 3 L11: 4.6598 L22: 8.2004 REMARK 3 L33: 1.6086 L12: 0.7462 REMARK 3 L13: 1.4430 L23: -1.5701 REMARK 3 S TENSOR REMARK 3 S11: -0.2221 S12: -0.8658 S13: -0.6000 REMARK 3 S21: 1.3513 S22: -0.2511 S23: -0.2238 REMARK 3 S31: -0.3559 S32: 0.7668 S33: 0.5630 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3445 -19.0792 47.5610 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.3475 REMARK 3 T33: 0.2889 T12: 0.1154 REMARK 3 T13: -0.0698 T23: -0.0772 REMARK 3 L TENSOR REMARK 3 L11: 1.5028 L22: 7.6938 REMARK 3 L33: 7.9237 L12: 1.9601 REMARK 3 L13: -0.1086 L23: -4.0436 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: -0.3018 S13: 0.6225 REMARK 3 S21: 0.2954 S22: 0.0194 S23: 0.1392 REMARK 3 S31: -0.1156 S32: 0.8973 S33: -0.0332 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9528 -38.3856 11.6373 REMARK 3 T TENSOR REMARK 3 T11: 0.7078 T22: 0.3589 REMARK 3 T33: 0.4856 T12: -0.0441 REMARK 3 T13: -0.0624 T23: -0.0643 REMARK 3 L TENSOR REMARK 3 L11: 3.1162 L22: 4.1508 REMARK 3 L33: 2.5736 L12: 0.2569 REMARK 3 L13: 0.1152 L23: -0.6665 REMARK 3 S TENSOR REMARK 3 S11: -0.1269 S12: 0.1734 S13: -0.2713 REMARK 3 S21: -1.0097 S22: 0.4218 S23: 0.2789 REMARK 3 S31: 1.1082 S32: -0.2054 S33: -0.2778 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9210 -39.4217 11.6152 REMARK 3 T TENSOR REMARK 3 T11: 0.9801 T22: 0.6083 REMARK 3 T33: 0.6342 T12: -0.0838 REMARK 3 T13: 0.2240 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.2324 L22: 2.9185 REMARK 3 L33: 0.2620 L12: -1.2130 REMARK 3 L13: -0.3624 L23: -0.2951 REMARK 3 S TENSOR REMARK 3 S11: -0.6444 S12: 0.5303 S13: 0.1142 REMARK 3 S21: -0.6466 S22: 0.1679 S23: -0.9976 REMARK 3 S31: 0.5484 S32: 0.0730 S33: 0.1906 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2181 -35.1609 33.7477 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.2032 REMARK 3 T33: 0.2676 T12: 0.0049 REMARK 3 T13: -0.0275 T23: 0.0534 REMARK 3 L TENSOR REMARK 3 L11: 3.4485 L22: 1.8762 REMARK 3 L33: 2.8519 L12: 0.5776 REMARK 3 L13: -1.1875 L23: 0.3480 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: -0.0966 S13: -0.1382 REMARK 3 S21: -0.2678 S22: -0.0593 S23: 0.0703 REMARK 3 S31: 0.1743 S32: -0.1861 S33: 0.0331 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11899 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.738 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.19600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3V0V, 1HZH, 4D9L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% 2-PROPANOL, 25% PEG-4000, 50MM REMARK 280 HEPES BUFFER PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.10350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.46400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.31250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.46400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.10350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.31250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 221 REMARK 465 ASP A 222 REMARK 465 LYS A 223 REMARK 465 THR A 224 REMARK 465 HIS A 225 REMARK 465 THR A 226 REMARK 465 CYS A 227 REMARK 465 PRO A 228 REMARK 465 PRO A 229 REMARK 465 CYS A 230 REMARK 465 PRO A 231 REMARK 465 ALA A 232 REMARK 465 PRO A 233 REMARK 465 GLU A 234 REMARK 465 LEU A 235 REMARK 465 LEU A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 PRO A 239 REMARK 465 SER A 240 REMARK 465 VAL A 241 REMARK 465 PHE A 242 REMARK 465 LEU A 243 REMARK 465 PHE A 244 REMARK 465 PRO A 245 REMARK 465 PRO A 246 REMARK 465 LYS A 247 REMARK 465 PRO A 248 REMARK 465 LYS A 249 REMARK 465 ASP A 250 REMARK 465 THR A 251 REMARK 465 LEU A 252 REMARK 465 MET A 253 REMARK 465 ILE A 254 REMARK 465 SER A 255 REMARK 465 ARG A 256 REMARK 465 THR A 257 REMARK 465 PRO A 258 REMARK 465 GLU A 259 REMARK 465 VAL A 260 REMARK 465 GLN B 1 REMARK 465 SER B 2 REMARK 465 GLY B 24 REMARK 465 SER B 25 REMARK 465 ILE B 29 REMARK 465 GLY B 30 REMARK 465 ALA B 31 REMARK 465 SER B 32 REMARK 465 HIS B 33 REMARK 465 ASP B 34 REMARK 465 ASP B 94 REMARK 465 SER B 95 REMARK 465 ASN B 96 REMARK 465 LEU B 97 REMARK 465 SER B 98 REMARK 465 CYS B 217 REMARK 465 SER B 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 3 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N VAL B 35 OD1 ASN B 53 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 67 6.42 -50.82 REMARK 500 SER A 77 60.66 61.76 REMARK 500 ASP A 149 79.30 50.90 REMARK 500 THR A 165 -61.16 -128.01 REMARK 500 SER A 178 -59.96 -141.30 REMARK 500 LYS A 219 175.95 174.59 REMARK 500 ASN B 53 -24.48 80.24 REMARK 500 ALA B 86 -171.89 -170.24 REMARK 500 SER B 92 -156.22 -116.90 REMARK 500 LEU B 112 47.07 -96.29 REMARK 500 GLN B 114 148.28 72.65 REMARK 500 PRO B 147 -172.31 -69.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 301 DBREF 5BQ7 A 1 260 PDB 5BQ7 5BQ7 1 260 DBREF 5BQ7 B 1 218 PDB 5BQ7 5BQ7 1 218 SEQRES 1 A 260 GLN VAL GLN LEU VAL GLN SER GLY SER GLU LEU LYS LYS SEQRES 2 A 260 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 A 260 TYR THR LEU THR ARG TYR ALA MET THR TRP VAL ARG GLN SEQRES 4 A 260 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 A 260 THR TYR THR GLY ASN PRO THR TYR VAL GLN GLY PHE THR SEQRES 6 A 260 GLY ARG PHE VAL PHE SER LEU ASP THR SER VAL SER THR SEQRES 7 A 260 ALA PHE LEU HIS ILE THR SER LEU LYS ALA GLU ASP THR SEQRES 8 A 260 ALA VAL TYR PHE CYS ALA ARG GLU GLY GLY ALA ARG GLY SEQRES 9 A 260 PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 A 260 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 A 260 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LYS SEQRES 12 A 260 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 A 260 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 A 260 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 A 260 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 A 260 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 A 260 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 18 A 260 ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 19 A 260 LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 20 A 260 PRO LYS ASP THR LEU MET ILE SER ARG THR PRO GLU VAL SEQRES 1 B 218 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER GLY ALA SEQRES 2 B 218 PRO GLY GLN ARG VAL THR ILE SER CYS THR GLY SER SER SEQRES 3 B 218 SER ASN ILE GLY ALA SER HIS ASP VAL HIS TRP TYR GLN SEQRES 4 B 218 GLN LEU PRO GLY THR ALA PRO THR LEU LEU ILE TYR VAL SEQRES 5 B 218 ASN SER ASN ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 B 218 GLY SER LYS SER GLY THR SER ALA SER LEU ALA ILE THR SEQRES 7 B 218 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLN SEQRES 8 B 218 SER TYR ASP SER ASN LEU SER GLY SER ALA VAL PHE GLY SEQRES 9 B 218 GLY GLY THR LYS LEU THR VAL LEU GLY GLN PRO LEU ALA SEQRES 10 B 218 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 B 218 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 B 218 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 B 218 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 B 218 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 B 218 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SEQRES 16 B 218 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 B 218 GLU LYS THR VAL ALA PRO THR GLU CYS SER HET PEG B 301 17 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *28(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 LYS A 87 THR A 91 5 5 HELIX 3 AA3 SER A 161 ALA A 163 5 3 HELIX 4 AA4 SER A 192 LEU A 194 5 3 HELIX 5 AA5 GLN B 81 GLU B 85 5 5 HELIX 6 AA6 SER B 127 ALA B 133 1 7 HELIX 7 AA7 THR B 187 HIS B 194 1 8 SHEET 1 AA1 4 GLN A 3 GLN A 6 0 SHEET 2 AA1 4 VAL A 18 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AA1 4 THR A 78 ILE A 83 -1 O LEU A 81 N VAL A 20 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N VAL A 69 O HIS A 82 SHEET 1 AA2 6 GLU A 10 LYS A 12 0 SHEET 2 AA2 6 THR A 112 VAL A 116 1 O THR A 115 N GLU A 10 SHEET 3 AA2 6 ALA A 92 GLU A 99 -1 N ALA A 92 O VAL A 114 SHEET 4 AA2 6 ALA A 33 GLN A 39 -1 N GLN A 39 O VAL A 93 SHEET 5 AA2 6 GLU A 46 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 PRO A 58 TYR A 60 -1 O THR A 59 N TRP A 50 SHEET 1 AA3 4 GLU A 10 LYS A 12 0 SHEET 2 AA3 4 THR A 112 VAL A 116 1 O THR A 115 N GLU A 10 SHEET 3 AA3 4 ALA A 92 GLU A 99 -1 N ALA A 92 O VAL A 114 SHEET 4 AA3 4 PHE A 105 TRP A 108 -1 O TYR A 107 N ARG A 98 SHEET 1 AA4 4 SER A 125 SER A 132 0 SHEET 2 AA4 4 THR A 140 TYR A 150 -1 O LEU A 146 N PHE A 127 SHEET 3 AA4 4 TYR A 181 PRO A 190 -1 O LEU A 183 N VAL A 147 SHEET 4 AA4 4 VAL A 168 THR A 170 -1 N HIS A 169 O VAL A 186 SHEET 1 AA5 4 SER A 125 SER A 132 0 SHEET 2 AA5 4 THR A 140 TYR A 150 -1 O LEU A 146 N PHE A 127 SHEET 3 AA5 4 TYR A 181 PRO A 190 -1 O LEU A 183 N VAL A 147 SHEET 4 AA5 4 VAL A 174 LEU A 175 -1 N VAL A 174 O SER A 182 SHEET 1 AA6 3 THR A 156 TRP A 159 0 SHEET 2 AA6 3 ILE A 200 HIS A 205 -1 O ASN A 204 N THR A 156 SHEET 3 AA6 3 THR A 210 ARG A 215 -1 O VAL A 212 N VAL A 203 SHEET 1 AA7 5 SER B 9 GLY B 12 0 SHEET 2 AA7 5 LYS B 108 VAL B 111 1 O THR B 110 N VAL B 10 SHEET 3 AA7 5 ALA B 86 SER B 92 -1 N ALA B 86 O LEU B 109 SHEET 4 AA7 5 HIS B 36 GLN B 40 -1 N HIS B 36 O GLN B 91 SHEET 5 AA7 5 THR B 47 ILE B 50 -1 O LEU B 49 N TRP B 37 SHEET 1 AA8 4 SER B 9 GLY B 12 0 SHEET 2 AA8 4 LYS B 108 VAL B 111 1 O THR B 110 N VAL B 10 SHEET 3 AA8 4 ALA B 86 SER B 92 -1 N ALA B 86 O LEU B 109 SHEET 4 AA8 4 VAL B 102 PHE B 103 -1 O VAL B 102 N SER B 92 SHEET 1 AA9 3 ARG B 17 CYS B 22 0 SHEET 2 AA9 3 ALA B 73 THR B 78 -1 O ILE B 77 N VAL B 18 SHEET 3 AA9 3 PHE B 64 LYS B 68 -1 N SER B 65 O ALA B 76 SHEET 1 AB1 4 SER B 120 PHE B 124 0 SHEET 2 AB1 4 ALA B 136 PHE B 145 -1 O LEU B 141 N THR B 122 SHEET 3 AB1 4 TYR B 178 LEU B 186 -1 O LEU B 186 N ALA B 136 SHEET 4 AB1 4 VAL B 165 THR B 167 -1 N GLU B 166 O TYR B 183 SHEET 1 AB2 4 SER B 120 PHE B 124 0 SHEET 2 AB2 4 ALA B 136 PHE B 145 -1 O LEU B 141 N THR B 122 SHEET 3 AB2 4 TYR B 178 LEU B 186 -1 O LEU B 186 N ALA B 136 SHEET 4 AB2 4 SER B 171 LYS B 172 -1 N SER B 171 O ALA B 179 SHEET 1 AB3 4 SER B 159 VAL B 161 0 SHEET 2 AB3 4 THR B 151 ALA B 156 -1 N ALA B 156 O SER B 159 SHEET 3 AB3 4 TYR B 197 HIS B 203 -1 O THR B 202 N THR B 151 SHEET 4 AB3 4 SER B 206 VAL B 212 -1 O SER B 206 N HIS B 203 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.03 SSBOND 2 CYS A 145 CYS A 201 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 90 1555 1555 2.03 SSBOND 4 CYS B 140 CYS B 199 1555 1555 2.03 CISPEP 1 GLY A 104 PHE A 105 0 17.16 CISPEP 2 PHE A 151 PRO A 152 0 -10.43 CISPEP 3 GLU A 153 PRO A 154 0 -4.94 CISPEP 4 SER A 178 GLY A 179 0 -4.10 CISPEP 5 LEU A 194 GLY A 195 0 -2.22 CISPEP 6 TYR B 146 PRO B 147 0 -1.66 SITE 1 AC1 3 VAL A 93 PHE A 95 GLY B 43 CRYST1 40.207 66.625 168.928 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024871 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005920 0.00000