HEADER SIGNALING PROTEIN 28-MAY-15 5BQ8 TITLE CRYSTAL STRUCTURE OF NORRIN, A WNT SIGNALLING ACTIVATOR, CRYSTAL FORM TITLE 2 II COMPND MOL_ID: 1; COMPND 2 MOLECULE: NORRIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 25-133; COMPND 5 SYNONYM: NORRIE DISEASE PROTEIN,X-LINKED EXUDATIVE VITREORETINOPATHY COMPND 6 2 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NORRIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 25-133; COMPND 12 SYNONYM: NORRIE DISEASE PROTEIN,X-LINKED EXUDATIVE VITREORETINOPATHY COMPND 13 2 PROTEIN; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: NORRIN; COMPND 17 CHAIN: D; COMPND 18 FRAGMENT: UNP RESIDUES 25-133; COMPND 19 SYNONYM: NORRIE DISEASE PROTEIN,X-LINKED EXUDATIVE VITREORETINOPATHY COMPND 20 2 PROTEIN; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NDP, EVR2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 10 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-11268; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PLASMID; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: NDP, EVR2; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 21 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-11268; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PLASMID; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 25 ORGANISM_COMMON: HUMAN; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 GENE: NDP, EVR2; SOURCE 28 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 29 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 31 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 32 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-11268; SOURCE 33 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS WNT SIGNALLING PATHWAY, NORRIE DISEASE PROTEIN, CYSTINE-KNOT LIKE KEYWDS 2 GROWTH FACTOR, LIGAND FOR FRIZZLED 4 RECEPTOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.-H.CHANG,F.-L.HSIEH,K.HARLOS,E.Y.JONES REVDAT 5 10-JAN-24 5BQ8 1 REMARK REVDAT 4 13-SEP-17 5BQ8 1 REMARK REVDAT 3 29-JUL-15 5BQ8 1 JRNL REVDAT 2 22-JUL-15 5BQ8 1 JRNL REVDAT 1 01-JUL-15 5BQ8 0 JRNL AUTH T.H.CHANG,F.L.HSIEH,M.ZEBISCH,K.HARLOS,J.ELEGHEERT,E.Y.JONES JRNL TITL STRUCTURE AND FUNCTIONAL PROPERTIES OF NORRIN MIMIC WNT FOR JRNL TITL 2 SIGNALLING WITH FRIZZLED4, LRP5/6, AND PROTEOGLYCAN. JRNL REF ELIFE V. 4 06554 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26158506 JRNL DOI 10.7554/ELIFE.06554 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.6987 - 3.7311 1.00 2699 142 0.1768 0.2105 REMARK 3 2 3.7311 - 3.2599 1.00 2665 140 0.2052 0.2474 REMARK 3 3 3.2599 - 2.9620 1.00 2644 151 0.2200 0.2200 REMARK 3 4 2.9620 - 2.7498 1.00 2632 142 0.2551 0.2852 REMARK 3 5 2.7498 - 2.5878 1.00 2633 133 0.2531 0.2651 REMARK 3 6 2.5878 - 2.4582 1.00 2631 145 0.2649 0.2806 REMARK 3 7 2.4582 - 2.3512 1.00 2595 138 0.2869 0.3029 REMARK 3 8 2.3512 - 2.2607 1.00 2644 127 0.2818 0.3145 REMARK 3 9 2.2607 - 2.1827 1.00 2589 152 0.0000 0.0000 REMARK 3 10 2.1827 - 2.1145 1.00 2611 118 0.3391 0.3572 REMARK 3 11 2.1145 - 2.0541 1.00 2589 150 0.0000 0.0000 REMARK 3 12 2.0541 - 2.0000 1.00 2598 133 0.0000 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3278 REMARK 3 ANGLE : 1.076 4365 REMARK 3 CHIRALITY : 0.042 472 REMARK 3 PLANARITY : 0.004 548 REMARK 3 DIHEDRAL : 13.923 1265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 35 THROUGH 138) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9489 14.4495 -10.6795 REMARK 3 T TENSOR REMARK 3 T11: 0.3922 T22: 0.5066 REMARK 3 T33: 0.3870 T12: -0.0259 REMARK 3 T13: 0.0431 T23: 0.0852 REMARK 3 L TENSOR REMARK 3 L11: 0.9564 L22: 0.1483 REMARK 3 L33: 0.5984 L12: 0.5840 REMARK 3 L13: -0.0917 L23: 0.2990 REMARK 3 S TENSOR REMARK 3 S11: 0.1515 S12: -0.3081 S13: -0.0594 REMARK 3 S21: 0.0552 S22: -0.1308 S23: 0.0349 REMARK 3 S31: 0.1659 S32: -0.0361 S33: -0.0017 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 36 THROUGH 132) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8303 14.4056 -10.2958 REMARK 3 T TENSOR REMARK 3 T11: 0.3868 T22: 0.4478 REMARK 3 T33: 0.3074 T12: 0.0240 REMARK 3 T13: -0.0182 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 0.6933 L22: 0.6512 REMARK 3 L33: 0.6086 L12: -0.3099 REMARK 3 L13: 0.0949 L23: -0.0809 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: -0.4312 S13: 0.0121 REMARK 3 S21: 0.0487 S22: 0.0310 S23: -0.0940 REMARK 3 S31: 0.0656 S32: 0.0491 S33: 0.0189 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 35 THROUGH 133) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7416 16.5304 -38.0973 REMARK 3 T TENSOR REMARK 3 T11: 0.3549 T22: 0.4061 REMARK 3 T33: 0.3429 T12: -0.0422 REMARK 3 T13: -0.0309 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 0.7336 L22: 0.4636 REMARK 3 L33: 0.9024 L12: -0.4544 REMARK 3 L13: 0.1017 L23: 0.1059 REMARK 3 S TENSOR REMARK 3 S11: -0.0855 S12: 0.4055 S13: 0.1289 REMARK 3 S21: -0.1129 S22: 0.0434 S23: 0.0284 REMARK 3 S31: 0.0900 S32: -0.1298 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 37 THROUGH 138) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6536 12.0767 -37.5307 REMARK 3 T TENSOR REMARK 3 T11: 0.3527 T22: 0.3370 REMARK 3 T33: 0.3268 T12: -0.0078 REMARK 3 T13: 0.0401 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 1.0902 L22: 0.6791 REMARK 3 L33: 0.7916 L12: -0.4482 REMARK 3 L13: -0.4694 L23: 0.1390 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: 0.2548 S13: -0.1566 REMARK 3 S21: -0.1009 S22: 0.0826 S23: -0.1074 REMARK 3 S31: 0.1298 S32: 0.0258 S33: 0.0157 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 33.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 1.28900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 SODIUM ACETATE, PH 5.0, 5% PGA-LM, REMARK 280 4% PEG2000MME, 24% PEG550MME, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 51.33350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.52950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.33350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.52950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 22 REMARK 465 PRO A 23 REMARK 465 GLY A 24 REMARK 465 LYS A 25 REMARK 465 THR A 26 REMARK 465 ASP A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 PHE A 30 REMARK 465 ILE A 31 REMARK 465 MET A 32 REMARK 465 ASP A 33 REMARK 465 SER A 34 REMARK 465 GLN A 139 REMARK 465 VAL A 140 REMARK 465 ALA A 141 REMARK 465 PRO A 142 REMARK 465 ALA A 143 REMARK 465 GLY B 22 REMARK 465 PRO B 23 REMARK 465 GLY B 24 REMARK 465 LYS B 25 REMARK 465 THR B 26 REMARK 465 ASP B 27 REMARK 465 SER B 28 REMARK 465 SER B 29 REMARK 465 PHE B 30 REMARK 465 ILE B 31 REMARK 465 MET B 32 REMARK 465 ASP B 33 REMARK 465 SER B 34 REMARK 465 ASP B 35 REMARK 465 SER B 133 REMARK 465 GLY B 134 REMARK 465 THR B 135 REMARK 465 GLU B 136 REMARK 465 THR B 137 REMARK 465 SER B 138 REMARK 465 GLN B 139 REMARK 465 VAL B 140 REMARK 465 ALA B 141 REMARK 465 PRO B 142 REMARK 465 ALA B 143 REMARK 465 GLY C 22 REMARK 465 PRO C 23 REMARK 465 GLY C 24 REMARK 465 LYS C 25 REMARK 465 THR C 26 REMARK 465 ASP C 27 REMARK 465 SER C 28 REMARK 465 SER C 29 REMARK 465 PHE C 30 REMARK 465 ILE C 31 REMARK 465 MET C 32 REMARK 465 ASP C 33 REMARK 465 SER C 34 REMARK 465 GLY C 134 REMARK 465 THR C 135 REMARK 465 GLU C 136 REMARK 465 THR C 137 REMARK 465 SER C 138 REMARK 465 GLN C 139 REMARK 465 VAL C 140 REMARK 465 ALA C 141 REMARK 465 PRO C 142 REMARK 465 ALA C 143 REMARK 465 GLY D 22 REMARK 465 PRO D 23 REMARK 465 GLY D 24 REMARK 465 LYS D 25 REMARK 465 THR D 26 REMARK 465 ASP D 27 REMARK 465 SER D 28 REMARK 465 SER D 29 REMARK 465 PHE D 30 REMARK 465 ILE D 31 REMARK 465 MET D 32 REMARK 465 ASP D 33 REMARK 465 SER D 34 REMARK 465 ASP D 35 REMARK 465 PRO D 36 REMARK 465 GLN D 139 REMARK 465 VAL D 140 REMARK 465 ALA D 141 REMARK 465 PRO D 142 REMARK 465 ALA D 143 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 90 O HOH A 201 2.04 REMARK 500 OD1 ASN B 132 O HOH B 301 2.05 REMARK 500 O LEU B 78 O HOH B 302 2.05 REMARK 500 OD1 ASN C 132 O HOH C 301 2.10 REMARK 500 O HOH C 307 O HOH D 316 2.12 REMARK 500 O ASP C 35 NH1 ARG C 38 2.15 REMARK 500 O1 PEG D 201 O HOH D 301 2.16 REMARK 500 O HOH C 330 O HOH D 337 2.17 REMARK 500 OE1 GLU A 130 O HOH A 202 2.19 REMARK 500 O HOH D 307 O HOH D 332 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 87 153.81 -46.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MY2 RELATED DB: PDB REMARK 900 4MY2 CONTAINS THE SAME PROTEIN FUSED WITH MALTOSE-BINDING REMARK 900 PERIPLASMIC PROTEIN. REMARK 900 RELATED ID: 5BPU RELATED DB: PDB REMARK 900 NORRIN PROTEINS WERE GROWN IN ANOTHER CRYSTAL FORM DBREF 5BQ8 A 25 133 UNP Q00604 NDP_HUMAN 25 133 DBREF 5BQ8 B 25 133 UNP Q00604 NDP_HUMAN 25 133 DBREF 5BQ8 C 25 133 UNP Q00604 NDP_HUMAN 25 133 DBREF 5BQ8 D 25 133 UNP Q00604 NDP_HUMAN 25 133 SEQADV 5BQ8 GLY A 22 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 PRO A 23 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLY A 24 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLY A 134 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 THR A 135 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLU A 136 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 THR A 137 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 SER A 138 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLN A 139 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 VAL A 140 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 ALA A 141 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 PRO A 142 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 ALA A 143 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLY B 22 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 PRO B 23 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLY B 24 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLY B 134 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 THR B 135 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLU B 136 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 THR B 137 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 SER B 138 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLN B 139 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 VAL B 140 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 ALA B 141 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 PRO B 142 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 ALA B 143 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLY C 22 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 PRO C 23 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLY C 24 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLY C 134 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 THR C 135 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLU C 136 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 THR C 137 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 SER C 138 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLN C 139 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 VAL C 140 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 ALA C 141 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 PRO C 142 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 ALA C 143 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLY D 22 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 PRO D 23 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLY D 24 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLY D 134 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 THR D 135 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLU D 136 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 THR D 137 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 SER D 138 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 GLN D 139 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 VAL D 140 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 ALA D 141 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 PRO D 142 UNP Q00604 EXPRESSION TAG SEQADV 5BQ8 ALA D 143 UNP Q00604 EXPRESSION TAG SEQRES 1 A 122 GLY PRO GLY LYS THR ASP SER SER PHE ILE MET ASP SER SEQRES 2 A 122 ASP PRO ARG ARG CYS MET ARG HIS HIS TYR VAL ASP SER SEQRES 3 A 122 ILE SER HIS PRO LEU TYR LYS CYS SER SER LYS MET VAL SEQRES 4 A 122 LEU LEU ALA ARG CYS GLU GLY HIS CYS SER GLN ALA SER SEQRES 5 A 122 ARG SER GLU PRO LEU VAL SER PHE SER THR VAL LEU MLY SEQRES 6 A 122 GLN PRO PHE ARG SER SER CYS HIS CYS CYS ARG PRO GLN SEQRES 7 A 122 THR SER LYS LEU MLY ALA LEU ARG LEU ARG CYS SER GLY SEQRES 8 A 122 GLY MET ARG LEU THR ALA THR TYR ARG TYR ILE LEU SER SEQRES 9 A 122 CYS HIS CYS GLU GLU CYS ASN SER GLY THR GLU THR SER SEQRES 10 A 122 GLN VAL ALA PRO ALA SEQRES 1 B 122 GLY PRO GLY LYS THR ASP SER SER PHE ILE MET ASP SER SEQRES 2 B 122 ASP PRO ARG ARG CYS MET ARG HIS HIS TYR VAL ASP SER SEQRES 3 B 122 ILE SER HIS PRO LEU TYR MLY CYS SER SER LYS MET VAL SEQRES 4 B 122 LEU LEU ALA ARG CYS GLU GLY HIS CYS SER GLN ALA SER SEQRES 5 B 122 ARG SER GLU PRO LEU VAL SER PHE SER THR VAL LEU MLY SEQRES 6 B 122 GLN PRO PHE ARG SER SER CYS HIS CYS CYS ARG PRO GLN SEQRES 7 B 122 THR SER LYS LEU MLY ALA LEU ARG LEU ARG CYS SER GLY SEQRES 8 B 122 GLY MET ARG LEU THR ALA THR TYR ARG TYR ILE LEU SER SEQRES 9 B 122 CYS HIS CYS GLU GLU CYS ASN SER GLY THR GLU THR SER SEQRES 10 B 122 GLN VAL ALA PRO ALA SEQRES 1 C 122 GLY PRO GLY LYS THR ASP SER SER PHE ILE MET ASP SER SEQRES 2 C 122 ASP PRO ARG ARG CYS MET ARG HIS HIS TYR VAL ASP SER SEQRES 3 C 122 ILE SER HIS PRO LEU TYR LYS CYS SER SER LYS MET VAL SEQRES 4 C 122 LEU LEU ALA ARG CYS GLU GLY HIS CYS SER GLN ALA SER SEQRES 5 C 122 ARG SER GLU PRO LEU VAL SER PHE SER THR VAL LEU MLY SEQRES 6 C 122 GLN PRO PHE ARG SER SER CYS HIS CYS CYS ARG PRO GLN SEQRES 7 C 122 THR SER LYS LEU MLY ALA LEU ARG LEU ARG CYS SER GLY SEQRES 8 C 122 GLY MET ARG LEU THR ALA THR TYR ARG TYR ILE LEU SER SEQRES 9 C 122 CYS HIS CYS GLU GLU CYS ASN SER GLY THR GLU THR SER SEQRES 10 C 122 GLN VAL ALA PRO ALA SEQRES 1 D 122 GLY PRO GLY LYS THR ASP SER SER PHE ILE MET ASP SER SEQRES 2 D 122 ASP PRO ARG ARG CYS MET ARG HIS HIS TYR VAL ASP SER SEQRES 3 D 122 ILE SER HIS PRO LEU TYR LYS CYS SER SER MLY MET VAL SEQRES 4 D 122 LEU LEU ALA ARG CYS GLU GLY HIS CYS SER GLN ALA SER SEQRES 5 D 122 ARG SER GLU PRO LEU VAL SER PHE SER THR VAL LEU MLY SEQRES 6 D 122 GLN PRO PHE ARG SER SER CYS HIS CYS CYS ARG PRO GLN SEQRES 7 D 122 THR SER MLY LEU MLY ALA LEU ARG LEU ARG CYS SER GLY SEQRES 8 D 122 GLY MET ARG LEU THR ALA THR TYR ARG TYR ILE LEU SER SEQRES 9 D 122 CYS HIS CYS GLU GLU CYS ASN SER GLY THR GLU THR SER SEQRES 10 D 122 GLN VAL ALA PRO ALA MODRES 5BQ8 MLY A 86 LYS MODIFIED RESIDUE MODRES 5BQ8 MLY A 104 LYS MODIFIED RESIDUE MODRES 5BQ8 MLY B 54 LYS MODIFIED RESIDUE MODRES 5BQ8 MLY B 86 LYS MODIFIED RESIDUE MODRES 5BQ8 MLY B 104 LYS MODIFIED RESIDUE MODRES 5BQ8 MLY C 86 LYS MODIFIED RESIDUE MODRES 5BQ8 MLY C 104 LYS MODIFIED RESIDUE MODRES 5BQ8 MLY D 58 LYS MODIFIED RESIDUE MODRES 5BQ8 MLY D 86 LYS MODIFIED RESIDUE MODRES 5BQ8 MLY D 102 LYS MODIFIED RESIDUE MODRES 5BQ8 MLY D 104 LYS MODIFIED RESIDUE HET MLY A 86 11 HET MLY A 104 11 HET MLY B 54 11 HET MLY B 86 11 HET MLY B 104 11 HET MLY C 86 11 HET MLY C 104 11 HET MLY D 58 11 HET MLY D 86 11 HET MLY D 102 11 HET MLY D 104 11 HET CL B 201 1 HET CL C 201 1 HET PEG D 201 7 HET CL D 202 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MLY 11(C8 H18 N2 O2) FORMUL 5 CL 3(CL 1-) FORMUL 7 PEG C4 H10 O3 FORMUL 9 HOH *122(H2 O) SHEET 1 AA1 4 MET A 40 ILE A 48 0 SHEET 2 AA1 4 LYS A 58 GLY A 67 -1 O LEU A 62 N TYR A 44 SHEET 3 AA1 4 SER B 73 PRO B 77 -1 O SER B 75 N CYS A 65 SHEET 4 AA1 4 PHE B 89 SER B 92 -1 O ARG B 90 N GLU B 76 SHEET 1 AA2 4 PHE A 89 SER A 92 0 SHEET 2 AA2 4 SER A 73 PRO A 77 -1 N GLU A 76 O ARG A 90 SHEET 3 AA2 4 LYS B 58 GLY B 67 -1 O CYS B 65 N SER A 75 SHEET 4 AA2 4 MET B 40 ILE B 48 -1 N TYR B 44 O LEU B 62 SHEET 1 AA3 4 SER A 80 PHE A 81 0 SHEET 2 AA3 4 MET B 114 GLU B 130 -1 O THR B 119 N SER A 80 SHEET 3 AA3 4 HIS B 94 CYS B 110 -1 N LYS B 102 O TYR B 122 SHEET 4 AA3 4 CYS B 55 SER B 56 -1 N SER B 56 O ARG B 109 SHEET 1 AA4 3 HIS A 94 ARG A 109 0 SHEET 2 AA4 3 ARG A 115 GLU A 130 -1 O TYR A 122 N LYS A 102 SHEET 3 AA4 3 SER B 80 PHE B 81 -1 O SER B 80 N THR A 119 SHEET 1 AA5 4 MET C 40 ILE C 48 0 SHEET 2 AA5 4 LYS C 58 GLY C 67 -1 O LEU C 62 N TYR C 44 SHEET 3 AA5 4 SER D 73 PRO D 77 -1 O SER D 75 N CYS C 65 SHEET 4 AA5 4 PHE D 89 SER D 92 -1 O ARG D 90 N GLU D 76 SHEET 1 AA6 4 PHE C 89 SER C 92 0 SHEET 2 AA6 4 SER C 73 PRO C 77 -1 N GLU C 76 O ARG C 90 SHEET 3 AA6 4 TYR D 53 GLY D 67 -1 O CYS D 65 N SER C 75 SHEET 4 AA6 4 MET D 40 HIS D 50 -1 N HIS D 42 O ARG D 64 SHEET 1 AA7 3 SER C 80 PHE C 81 0 SHEET 2 AA7 3 MET D 114 GLU D 130 -1 O THR D 119 N SER C 80 SHEET 3 AA7 3 HIS D 94 CYS D 110 -1 N LEU D 108 O LEU D 116 SHEET 1 AA8 3 HIS C 94 CYS C 110 0 SHEET 2 AA8 3 MET C 114 GLU C 130 -1 O TYR C 122 N LYS C 102 SHEET 3 AA8 3 SER D 80 PHE D 81 -1 O SER D 80 N THR C 119 SSBOND 1 CYS A 39 CYS A 96 1555 1555 2.03 SSBOND 2 CYS A 55 CYS A 110 1555 1555 2.03 SSBOND 3 CYS A 65 CYS A 126 1555 1555 2.03 SSBOND 4 CYS A 69 CYS A 128 1555 1555 2.03 SSBOND 5 CYS A 93 CYS B 95 1555 1555 2.03 SSBOND 6 CYS A 95 CYS B 93 1555 1555 2.03 SSBOND 7 CYS A 131 CYS B 131 1555 1555 2.03 SSBOND 8 CYS B 39 CYS B 96 1555 1555 2.03 SSBOND 9 CYS B 55 CYS B 110 1555 1555 2.03 SSBOND 10 CYS B 65 CYS B 126 1555 1555 2.04 SSBOND 11 CYS B 69 CYS B 128 1555 1555 2.03 SSBOND 12 CYS C 39 CYS C 96 1555 1555 2.03 SSBOND 13 CYS C 55 CYS C 110 1555 1555 2.03 SSBOND 14 CYS C 65 CYS C 126 1555 1555 2.04 SSBOND 15 CYS C 69 CYS C 128 1555 1555 2.03 SSBOND 16 CYS C 93 CYS D 95 1555 1555 2.03 SSBOND 17 CYS C 95 CYS D 93 1555 1555 2.03 SSBOND 18 CYS C 131 CYS D 131 1555 1555 2.03 SSBOND 19 CYS D 39 CYS D 96 1555 1555 2.03 SSBOND 20 CYS D 55 CYS D 110 1555 1555 2.03 SSBOND 21 CYS D 65 CYS D 126 1555 1555 2.03 SSBOND 22 CYS D 69 CYS D 128 1555 1555 2.04 LINK C LEU A 85 N MLY A 86 1555 1555 1.33 LINK C MLY A 86 N GLN A 87 1555 1555 1.33 LINK C LEU A 103 N MLY A 104 1555 1555 1.33 LINK C MLY A 104 N ALA A 105 1555 1555 1.33 LINK C TYR B 53 N MLY B 54 1555 1555 1.33 LINK C MLY B 54 N CYS B 55 1555 1555 1.33 LINK C LEU B 85 N MLY B 86 1555 1555 1.33 LINK C MLY B 86 N GLN B 87 1555 1555 1.33 LINK C LEU B 103 N MLY B 104 1555 1555 1.33 LINK C MLY B 104 N ALA B 105 1555 1555 1.33 LINK C LEU C 85 N MLY C 86 1555 1555 1.33 LINK C MLY C 86 N GLN C 87 1555 1555 1.33 LINK C LEU C 103 N MLY C 104 1555 1555 1.33 LINK C MLY C 104 N ALA C 105 1555 1555 1.33 LINK C SER D 57 N MLY D 58 1555 1555 1.33 LINK C MLY D 58 N MET D 59 1555 1555 1.33 LINK C LEU D 85 N MLY D 86 1555 1555 1.33 LINK C MLY D 86 N GLN D 87 1555 1555 1.33 LINK C SER D 101 N MLY D 102 1555 1555 1.33 LINK C MLY D 102 N LEU D 103 1555 1555 1.33 LINK C LEU D 103 N MLY D 104 1555 1555 1.33 LINK C MLY D 104 N ALA D 105 1555 1555 1.33 CISPEP 1 SER A 111 GLY A 112 0 -15.09 SITE 1 AC1 5 HOH A 231 ARG B 41 HIS B 43 TYR B 122 SITE 2 AC1 5 HOH B 322 SITE 1 AC2 1 HOH D 335 SITE 1 AC3 3 GLN D 71 CYS D 128 HOH D 301 SITE 1 AC4 3 ARG D 41 HIS D 43 TYR D 122 CRYST1 102.667 53.059 96.128 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009740 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010403 0.00000