HEADER MEMBRANE PROTEIN/ANTIBIOTIC 28-MAY-15 5BQA TITLE STRUCTURE OF THE YEAST F1FO ATPASE C10 RING WITH OLIGOMYCIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C, D, E, K, L, M, N, O; COMPND 4 SYNONYM: LIPID-BINDING PROTEIN, OLIGOMYCIN RESISTANCE PROTEIN 1; COMPND 5 EC: 3.6.-.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS C10 RING, F1FO ATP SYNTHASE, OLIGOMYCIN C, MITOCHONDRIA, MEMBRANE, KEYWDS 2 PROTEIN-ANTIBIOTIC COMPLEX, MEMBRANE PROTEIN-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.SYMERSKY,T.XU,D.M.MUELLER REVDAT 4 27-SEP-23 5BQA 1 REMARK REVDAT 3 27-NOV-19 5BQA 1 REMARK REVDAT 2 11-OCT-17 5BQA 1 REMARK REVDAT 1 26-AUG-15 5BQA 0 JRNL AUTH D.M.MUELLER JRNL TITL STRUCTURE OF THE YEAST F1FO ATPASE C10 RING WITH OLIGOMYCIN JRNL TITL 2 C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.SYMERSKY,D.OSOWSKI,D.E.WALTERS,D.M.MUELLER REMARK 1 TITL OLIGOMYCIN FRAMES A COMMON DRUG-BINDING SITE IN THE ATP REMARK 1 TITL 2 SYNTHASE. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 109 13961 2012 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 22869738 REMARK 1 DOI 10.1073/PNAS.1207912109 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 40381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2144 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2596 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 385 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.49000 REMARK 3 B22 (A**2) : 1.49000 REMARK 3 B33 (A**2) : -2.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.653 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5996 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8204 ; 1.344 ; 2.066 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 827 ; 4.002 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;38.105 ;23.178 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 894 ;14.367 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;10.592 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1115 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4068 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 48.5705 8.2129 32.0586 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.0760 REMARK 3 T33: 0.1026 T12: -0.0154 REMARK 3 T13: -0.0136 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.8620 L22: 0.5091 REMARK 3 L33: 19.2513 L12: -0.0397 REMARK 3 L13: -2.1116 L23: -0.8559 REMARK 3 S TENSOR REMARK 3 S11: 0.1291 S12: -0.2122 S13: 0.1133 REMARK 3 S21: 0.1012 S22: 0.1081 S23: -0.0491 REMARK 3 S31: -0.5345 S32: 0.5329 S33: -0.2372 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 51.2310 16.0077 28.1034 REMARK 3 T TENSOR REMARK 3 T11: 0.1939 T22: 0.1647 REMARK 3 T33: 0.2089 T12: -0.0795 REMARK 3 T13: 0.0002 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.6106 L22: 0.3404 REMARK 3 L33: 22.0471 L12: -0.2042 REMARK 3 L13: -1.4338 L23: -0.4084 REMARK 3 S TENSOR REMARK 3 S11: -0.1634 S12: -0.1816 S13: -0.0256 REMARK 3 S21: 0.1442 S22: -0.0290 S23: -0.1165 REMARK 3 S31: -0.1207 S32: 1.0314 S33: 0.1924 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 41 REMARK 3 ORIGIN FOR THE GROUP (A): 41.7123 12.7898 32.0194 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.0641 REMARK 3 T33: 0.1115 T12: 0.0038 REMARK 3 T13: 0.0142 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.8057 L22: 0.4477 REMARK 3 L33: 21.0965 L12: -0.0189 REMARK 3 L13: -1.0561 L23: -1.9030 REMARK 3 S TENSOR REMARK 3 S11: 0.1173 S12: -0.1940 S13: 0.1190 REMARK 3 S21: 0.1575 S22: 0.0793 S23: 0.0657 REMARK 3 S31: -0.6261 S32: 0.2198 S33: -0.1966 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 39.2821 20.7464 28.5651 REMARK 3 T TENSOR REMARK 3 T11: 0.3318 T22: 0.0784 REMARK 3 T33: 0.1920 T12: -0.0506 REMARK 3 T13: 0.0102 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 0.6539 L22: 0.3026 REMARK 3 L33: 18.8950 L12: -0.1597 REMARK 3 L13: -0.3538 L23: -2.0601 REMARK 3 S TENSOR REMARK 3 S11: -0.0670 S12: -0.2028 S13: 0.1313 REMARK 3 S21: 0.2306 S22: 0.0026 S23: -0.0440 REMARK 3 S31: -1.2960 S32: 0.3484 S33: 0.0644 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 41 REMARK 3 ORIGIN FOR THE GROUP (A): 33.4356 12.5244 32.1563 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.1083 REMARK 3 T33: 0.0973 T12: 0.0246 REMARK 3 T13: 0.0238 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.0537 L22: 0.5446 REMARK 3 L33: 17.6095 L12: 0.1583 REMARK 3 L13: 0.4059 L23: -2.8108 REMARK 3 S TENSOR REMARK 3 S11: 0.2346 S12: -0.1750 S13: 0.1166 REMARK 3 S21: 0.1911 S22: 0.0566 S23: 0.0841 REMARK 3 S31: -0.6039 S32: -0.1133 S33: -0.2912 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 42 C 75 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8982 17.4725 28.5694 REMARK 3 T TENSOR REMARK 3 T11: 0.2402 T22: 0.1388 REMARK 3 T33: 0.2032 T12: 0.1072 REMARK 3 T13: 0.0169 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.6307 L22: 0.4691 REMARK 3 L33: 20.5893 L12: 0.3440 REMARK 3 L13: 0.7158 L23: -1.9194 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: -0.2302 S13: 0.0860 REMARK 3 S21: 0.1563 S22: -0.0971 S23: 0.0122 REMARK 3 S31: -1.1207 S32: -0.3961 S33: 0.1081 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 41 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0371 7.4494 32.5532 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.0798 REMARK 3 T33: 0.1117 T12: 0.0220 REMARK 3 T13: 0.0247 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.9469 L22: 0.6461 REMARK 3 L33: 19.3641 L12: -0.0383 REMARK 3 L13: 1.3025 L23: -1.5192 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: -0.1957 S13: 0.0353 REMARK 3 S21: 0.1872 S22: 0.1444 S23: 0.1016 REMARK 3 S31: -0.4163 S32: -0.2451 S33: -0.2307 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 42 D 74 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7920 7.6893 28.3046 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.1985 REMARK 3 T33: 0.1876 T12: 0.0667 REMARK 3 T13: 0.0342 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.3619 L22: 0.3898 REMARK 3 L33: 21.7295 L12: 0.0391 REMARK 3 L13: 1.1572 L23: -0.5458 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: -0.1685 S13: 0.0673 REMARK 3 S21: 0.1579 S22: -0.0415 S23: 0.0542 REMARK 3 S31: -0.5787 S32: -0.8193 S33: 0.0527 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 41 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6877 -0.5132 32.2210 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0926 REMARK 3 T33: 0.1103 T12: 0.0121 REMARK 3 T13: 0.0285 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.8916 L22: 0.5652 REMARK 3 L33: 20.3730 L12: -0.1442 REMARK 3 L13: 1.8583 L23: -0.3714 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: -0.2312 S13: -0.1149 REMARK 3 S21: 0.1456 S22: 0.1590 S23: 0.1268 REMARK 3 S31: 0.1265 S32: -0.4391 S33: -0.2406 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 42 E 74 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8689 -5.1430 28.2697 REMARK 3 T TENSOR REMARK 3 T11: 0.0840 T22: 0.2709 REMARK 3 T33: 0.1989 T12: -0.0740 REMARK 3 T13: 0.0225 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.7504 L22: 0.5468 REMARK 3 L33: 21.0003 L12: -0.3971 REMARK 3 L13: 3.4459 L23: -0.5533 REMARK 3 S TENSOR REMARK 3 S11: -0.1170 S12: -0.2154 S13: -0.0153 REMARK 3 S21: 0.1928 S22: -0.0474 S23: 0.0853 REMARK 3 S31: -0.0764 S32: -1.3750 S33: 0.1644 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 1 K 41 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3698 27.7229 31.8563 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.1068 REMARK 3 T33: 0.0843 T12: -0.0540 REMARK 3 T13: -0.0004 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 0.8108 L22: 0.6847 REMARK 3 L33: 20.8672 L12: 0.1091 REMARK 3 L13: 1.4739 L23: 2.0418 REMARK 3 S TENSOR REMARK 3 S11: 0.2499 S12: -0.2544 S13: -0.1126 REMARK 3 S21: 0.1816 S22: 0.0953 S23: 0.0369 REMARK 3 S31: 0.4389 S32: -0.0686 S33: -0.3452 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 42 K 75 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3526 19.4830 28.6249 REMARK 3 T TENSOR REMARK 3 T11: 0.1809 T22: 0.1807 REMARK 3 T33: 0.1835 T12: -0.0849 REMARK 3 T13: 0.0120 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.4462 L22: 0.7611 REMARK 3 L33: 14.0846 L12: -0.0824 REMARK 3 L13: -0.2483 L23: 1.6881 REMARK 3 S TENSOR REMARK 3 S11: -0.1138 S12: -0.1733 S13: -0.0500 REMARK 3 S21: 0.2616 S22: -0.2198 S23: 0.0244 REMARK 3 S31: 0.7103 S32: -0.5527 S33: 0.3335 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 41 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7460 24.7157 31.7879 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.0917 REMARK 3 T33: 0.1197 T12: -0.0511 REMARK 3 T13: -0.0374 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 0.6615 L22: 0.9461 REMARK 3 L33: 22.5163 L12: 0.1180 REMARK 3 L13: 1.7843 L23: 2.4681 REMARK 3 S TENSOR REMARK 3 S11: 0.1815 S12: -0.2300 S13: -0.1064 REMARK 3 S21: 0.2241 S22: 0.0519 S23: -0.1109 REMARK 3 S31: 0.3078 S32: -0.2224 S33: -0.2333 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 42 L 75 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2664 17.3969 28.7060 REMARK 3 T TENSOR REMARK 3 T11: 0.1646 T22: 0.0998 REMARK 3 T33: 0.1813 T12: -0.0110 REMARK 3 T13: -0.0261 T23: 0.0634 REMARK 3 L TENSOR REMARK 3 L11: 0.7813 L22: 0.5037 REMARK 3 L33: 20.2855 L12: -0.0529 REMARK 3 L13: -0.5242 L23: 1.9919 REMARK 3 S TENSOR REMARK 3 S11: -0.0790 S12: -0.2464 S13: -0.1393 REMARK 3 S21: 0.2276 S22: -0.0848 S23: -0.0592 REMARK 3 S31: 1.0056 S32: -0.1425 S33: 0.1637 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 1 M 41 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2519 26.7288 32.1337 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.0892 REMARK 3 T33: 0.0990 T12: -0.0566 REMARK 3 T13: -0.0349 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 0.5000 L22: 0.8931 REMARK 3 L33: 21.4216 L12: 0.0841 REMARK 3 L13: -0.2397 L23: 1.7505 REMARK 3 S TENSOR REMARK 3 S11: 0.1561 S12: -0.2086 S13: -0.0867 REMARK 3 S21: 0.2214 S22: -0.0004 S23: -0.0954 REMARK 3 S31: 0.2829 S32: 0.2809 S33: -0.1557 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 42 M 75 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9785 23.6421 27.6795 REMARK 3 T TENSOR REMARK 3 T11: 0.1282 T22: 0.1297 REMARK 3 T33: 0.1872 T12: 0.0437 REMARK 3 T13: -0.0415 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 1.0031 L22: 0.9559 REMARK 3 L33: 26.4039 L12: 0.3112 REMARK 3 L13: -1.1407 L23: 3.2624 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.2390 S13: -0.0812 REMARK 3 S21: 0.2697 S22: -0.0827 S23: -0.0990 REMARK 3 S31: 1.0266 S32: 0.4304 S33: 0.0462 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 1 N 41 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4875 33.1785 32.4447 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.0737 REMARK 3 T33: 0.1100 T12: -0.0202 REMARK 3 T13: -0.0386 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.9714 L22: 0.7918 REMARK 3 L33: 21.7741 L12: 0.1776 REMARK 3 L13: -1.3147 L23: 0.8425 REMARK 3 S TENSOR REMARK 3 S11: 0.1519 S12: -0.2396 S13: -0.0247 REMARK 3 S21: 0.2362 S22: 0.0291 S23: -0.1091 REMARK 3 S31: 0.2421 S32: 0.2577 S33: -0.1810 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 42 N 75 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5197 34.8012 28.6601 REMARK 3 T TENSOR REMARK 3 T11: 0.0638 T22: 0.1413 REMARK 3 T33: 0.1720 T12: 0.0015 REMARK 3 T13: -0.0342 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.9289 L22: 0.6403 REMARK 3 L33: 22.6962 L12: 0.3702 REMARK 3 L13: -1.8440 L23: 0.8015 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.2740 S13: -0.0815 REMARK 3 S21: 0.1688 S22: -0.1152 S23: -0.0566 REMARK 3 S31: 0.4627 S32: 0.9414 S33: 0.1176 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 1 O 41 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8943 41.4833 32.2406 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.0672 REMARK 3 T33: 0.0918 T12: -0.0199 REMARK 3 T13: -0.0341 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.9086 L22: 0.8268 REMARK 3 L33: 16.7248 L12: 0.0922 REMARK 3 L13: -1.4849 L23: 0.2966 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: -0.2365 S13: 0.0006 REMARK 3 S21: 0.2029 S22: -0.0215 S23: -0.1309 REMARK 3 S31: -0.2213 S32: 0.2486 S33: -0.0618 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 42 O 75 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4455 47.5322 28.6202 REMARK 3 T TENSOR REMARK 3 T11: 0.1136 T22: 0.1842 REMARK 3 T33: 0.1742 T12: -0.0784 REMARK 3 T13: -0.0181 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.7553 L22: 0.6275 REMARK 3 L33: 22.7648 L12: 0.1601 REMARK 3 L13: -2.6255 L23: -1.1639 REMARK 3 S TENSOR REMARK 3 S11: -0.0684 S12: -0.2583 S13: 0.0254 REMARK 3 S21: 0.1915 S22: -0.2351 S23: -0.1157 REMARK 3 S31: 0.0993 S32: 0.9405 S33: 0.3034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5BQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42547 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.6.0117 REMARK 200 STARTING MODEL: PDB ENTRY 4F4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 68% MPD, 8% PROPYLENE GLYCOL, 0.3 M REMARK 280 SODIUM CHLORIDE, 2 MM MAGNESIUM SULFATE, 50 MM MES, PH 5.5, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.03400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 38.03400 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 244.24250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.03400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.12125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.03400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 366.36375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.03400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 366.36375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.03400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.12125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 38.03400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 38.03400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 244.24250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 38.03400 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 38.03400 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 244.24250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 38.03400 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 366.36375 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 38.03400 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 122.12125 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 38.03400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 122.12125 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 38.03400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 366.36375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 38.03400 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 38.03400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 244.24250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -420.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 76.06800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -411.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L, M, N, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 76.06800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 75 REMARK 465 VAL A 76 REMARK 465 VAL B 76 REMARK 465 VAL C 76 REMARK 465 GLY D 75 REMARK 465 VAL D 76 REMARK 465 GLY E 75 REMARK 465 VAL E 76 REMARK 465 VAL K 76 REMARK 465 VAL L 76 REMARK 465 VAL M 76 REMARK 465 VAL N 76 REMARK 465 VAL O 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 FME A 1 CG SD CE REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 FME B 1 CG SD CE REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 FME C 1 SD CE REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 FME D 1 CG SD CE REMARK 470 FME E 1 SD CE REMARK 470 GLN E 2 CG CD OE1 NE2 REMARK 470 FME K 1 CG SD CE REMARK 470 GLN K 2 CG CD OE1 NE2 REMARK 470 LEU K 5 CG CD1 CD2 REMARK 470 FME L 1 CG SD CE REMARK 470 GLN L 2 CG CD OE1 NE2 REMARK 470 LYS L 8 CG CD CE NZ REMARK 470 FME M 1 CG SD CE REMARK 470 GLN M 2 CG CD OE1 NE2 REMARK 470 PHE M 70 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE M 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN N 2 CG CD OE1 NE2 REMARK 470 FME O 1 SD CE REMARK 470 GLN O 2 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 FME E 1 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 FME L 1 CA - C - N ANGL. DEV. = 19.4 DEGREES REMARK 500 FME L 1 O - C - N ANGL. DEV. = -26.5 DEGREES REMARK 500 GLN L 2 C - N - CA ANGL. DEV. = 20.5 DEGREES REMARK 500 FME N 1 CA - C - N ANGL. DEV. = 18.7 DEGREES REMARK 500 FME N 1 O - C - N ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN M 40 78.43 -150.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 FME C 1 -10.67 REMARK 500 FME K 1 -18.50 REMARK 500 FME L 1 -25.37 REMARK 500 FME O 1 -11.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EF4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EF4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EF4 B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EF4 E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EF4 L 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EF4 M 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EF4 O 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BPS RELATED DB: PDB REMARK 900 RELATED ID: 5BQ6 RELATED DB: PDB REMARK 900 RELATED ID: 5BQJ RELATED DB: PDB DBREF 5BQA A 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQA B 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQA C 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQA D 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQA E 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQA K 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQA L 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQA M 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQA N 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQA O 2 76 UNP P61829 ATP9_YEAST 2 76 SEQADV 5BQA FME A 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQA FME B 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQA FME C 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQA FME D 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQA FME E 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQA FME K 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQA FME L 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQA FME M 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQA FME N 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQA FME O 1 UNP P61829 INITIATING METHIONINE SEQRES 1 A 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 A 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 A 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 A 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 A 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 A 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 B 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 B 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 B 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 B 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 B 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 B 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 C 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 C 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 C 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 C 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 C 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 C 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 D 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 D 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 D 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 D 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 D 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 D 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 E 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 E 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 E 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 E 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 E 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 E 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 K 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 K 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 K 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 K 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 K 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 K 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 L 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 L 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 L 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 L 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 L 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 L 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 M 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 M 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 M 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 M 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 M 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 M 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 N 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 N 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 N 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 N 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 N 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 N 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 O 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 O 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 O 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 O 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 O 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 O 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL HET FME A 1 7 HET FME B 1 7 HET FME C 1 8 HET FME D 1 7 HET FME E 1 8 HET FME K 1 7 HET FME L 1 7 HET FME M 1 7 HET FME N 1 10 HET FME O 1 8 HET EF4 A 101 55 HET EF4 B 101 55 HET EF4 B 102 55 HET EF4 E 101 55 HET EF4 L 101 55 HET EF4 M 101 55 HET EF4 O 101 55 HETNAM FME N-FORMYLMETHIONINE HETNAM EF4 OLIGOMYCIN C FORMUL 1 FME 10(C6 H11 N O3 S) FORMUL 11 EF4 7(C45 H74 O10) FORMUL 18 HOH *117(H2 O) HELIX 1 AA1 FME A 1 SER A 15 1 15 HELIX 2 AA2 GLY A 18 ASN A 40 1 23 HELIX 3 AA3 ILE A 43 PHE A 74 1 32 HELIX 4 AA4 GLN B 2 SER B 15 1 14 HELIX 5 AA5 GLY B 18 ASN B 40 1 23 HELIX 6 AA6 ILE B 43 PHE B 74 1 32 HELIX 7 AA7 GLN C 2 SER C 15 1 14 HELIX 8 AA8 GLY C 18 ASN C 40 1 23 HELIX 9 AA9 ILE C 43 PHE C 74 1 32 HELIX 10 AB1 GLN D 2 SER D 15 1 14 HELIX 11 AB2 GLY D 18 ASN D 40 1 23 HELIX 12 AB3 ILE D 43 PHE D 74 1 32 HELIX 13 AB4 GLN E 2 SER E 15 1 14 HELIX 14 AB5 GLY E 18 ASN E 40 1 23 HELIX 15 AB6 ILE E 43 PHE E 74 1 32 HELIX 16 AB7 GLN K 2 SER K 15 1 14 HELIX 17 AB8 GLY K 18 ASN K 40 1 23 HELIX 18 AB9 ILE K 43 GLY K 75 1 33 HELIX 19 AC1 GLN L 2 SER L 15 1 14 HELIX 20 AC2 GLY L 18 ASN L 40 1 23 HELIX 21 AC3 ILE L 43 GLY L 75 1 33 HELIX 22 AC4 GLN M 2 SER M 15 1 14 HELIX 23 AC5 GLY M 18 ASN M 40 1 23 HELIX 24 AC6 ILE M 43 GLY M 75 1 33 HELIX 25 AC7 GLN N 2 SER N 15 1 14 HELIX 26 AC8 GLY N 18 ASN N 40 1 23 HELIX 27 AC9 ILE N 43 PHE N 74 1 32 HELIX 28 AD1 GLN O 2 SER O 15 1 14 HELIX 29 AD2 GLY O 18 ASN O 40 1 23 HELIX 30 AD3 ILE O 43 GLY O 75 1 33 LINK C FME A 1 N GLN A 2 1555 1555 1.42 LINK C FME B 1 N GLN B 2 1555 1555 1.43 LINK C FME C 1 N GLN C 2 1555 1555 1.43 LINK C FME D 1 N GLN D 2 1555 1555 1.42 LINK C FME E 1 N GLN E 2 1555 1555 1.42 LINK C FME K 1 N GLN K 2 1555 1555 1.42 LINK C FME L 1 N GLN L 2 1555 1555 1.43 LINK C FME M 1 N GLN M 2 1555 1555 1.43 LINK C FME N 1 N GLN N 2 1555 1555 1.43 LINK C FME O 1 N GLN O 2 1555 1555 1.42 SITE 1 AC1 11 PHE A 55 ALA A 56 GLU A 59 LEU A 63 SITE 2 AC1 11 LEU E 53 ALA E 56 ALA E 60 PHE E 64 SITE 3 AC1 11 PHE K 55 EF4 L 101 LEU O 53 SITE 1 AC2 7 LEU B 53 LEU B 57 ALA B 60 PHE B 64 SITE 2 AC2 7 EF4 B 102 ALA C 56 LEU C 63 SITE 1 AC3 9 LEU A 53 ALA A 60 ILE B 52 PHE B 55 SITE 2 AC3 9 ALA B 56 GLU B 59 LEU B 63 EF4 B 101 SITE 3 AC3 9 EF4 O 101 SITE 1 AC4 9 ALA D 56 LEU D 57 ALA D 60 PHE D 64 SITE 2 AC4 9 PHE E 55 ALA E 56 GLU E 59 ALA E 60 SITE 3 AC4 9 LEU E 63 SITE 1 AC5 9 EF4 A 101 ALA K 56 ALA K 60 PHE K 64 SITE 2 AC5 9 PHE L 55 ALA L 56 GLU L 59 ALA L 60 SITE 3 AC5 9 LEU L 63 SITE 1 AC6 6 PHE D 55 ALA L 56 ALA L 60 PHE M 55 SITE 2 AC6 6 ALA M 56 GLU M 59 SITE 1 AC7 9 EF4 B 102 ALA N 56 ALA N 60 PHE O 55 SITE 2 AC7 9 ALA O 56 GLU O 59 LEU O 63 HOH O 202 SITE 3 AC7 9 HOH O 208 CRYST1 76.068 76.068 488.485 90.00 90.00 90.00 I 41 2 2 160 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013146 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002047 0.00000 HETATM 1 N FME A 1 47.114 12.475 64.557 1.00 61.96 N ANISOU 1 N FME A 1 9615 8945 4980 -809 72 -1262 N HETATM 2 CN FME A 1 45.886 11.963 64.358 1.00 60.63 C ANISOU 2 CN FME A 1 9322 8620 5095 -207 110 -1077 C HETATM 3 O1 FME A 1 45.380 11.895 63.237 1.00 58.34 O ANISOU 3 O1 FME A 1 9002 8172 4993 14 146 -985 O HETATM 4 CA FME A 1 47.993 12.820 63.444 1.00 61.50 C ANISOU 4 CA FME A 1 9574 8943 4848 -1251 53 -1353 C HETATM 5 CB FME A 1 49.186 13.642 63.920 1.00 65.54 C ANISOU 5 CB FME A 1 10351 9696 4852 -2069 56 -1582 C HETATM 6 C FME A 1 48.484 11.609 62.701 1.00 57.17 C ANISOU 6 C FME A 1 8280 8848 4592 -1105 -113 -1235 C HETATM 7 O FME A 1 48.723 11.736 61.476 1.00 55.95 O ANISOU 7 O FME A 1 8114 8619 4522 -1209 -107 -1235 O