HEADER MEMBRANE PROTEIN/ANTIBIOTIC 29-MAY-15 5BQJ TITLE STRUCTURE OF THE YEAST F1FO ATPASE C10 RING WITH 21-HYDROXY-OLIGOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C, D, E, K, L, M, N, O; COMPND 4 SYNONYM: LIPID-BINDING PROTEIN, OLIGOMYCIN RESISTANCE PROTEIN 1; COMPND 5 EC: 3.6.-.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS C10 RING, F1FO ATP SYNTHASE, 21-HYDROXY-OLIGOMYCIN, MITOCHONDRIA, KEYWDS 2 MEMBRANE, PROTEIN-ANTIBIOTIC COMPLEX, MEMBRANE PROTEIN-ANTIBIOTIC KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.SYMERSKY,T.XU,D.M.MUELLER REVDAT 4 27-SEP-23 5BQJ 1 REMARK REVDAT 3 27-NOV-19 5BQJ 1 REMARK REVDAT 2 06-SEP-17 5BQJ 1 REMARK REVDAT 1 26-AUG-15 5BQJ 0 JRNL AUTH D.M.MUELLER JRNL TITL STRUCTURE OF THE YEAST F1FO ATPASE C10 RING WITH JRNL TITL 2 21-HYDROXY-OLIGOMYCIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.SYMERSKY,D.OSOWSKI,D.E.WALTERS,D.M.MUELLER REMARK 1 TITL OLIGOMYCIN FRAMES A COMMON DRUG-BINDING SITE IN THE ATP REMARK 1 TITL 2 SYNTHASE. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 109 13961 2012 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 22869738 REMARK 1 DOI 10.1073/PNAS.1207912109 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2155 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2642 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 399 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -2.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.256 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.019 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6023 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8260 ; 1.263 ; 2.068 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 831 ; 3.824 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;38.102 ;23.101 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 896 ;13.970 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 8.710 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1125 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4079 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 48.3265 8.3734 31.9850 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.0618 REMARK 3 T33: 0.0917 T12: 0.0146 REMARK 3 T13: -0.0255 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.8472 L22: 0.6439 REMARK 3 L33: 20.5708 L12: 0.0381 REMARK 3 L13: -2.0871 L23: -1.0893 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.2083 S13: 0.1158 REMARK 3 S21: 0.1416 S22: 0.0648 S23: -0.0653 REMARK 3 S31: -0.3354 S32: 0.3126 S33: -0.0687 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9054 16.1799 28.0408 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1199 REMARK 3 T33: 0.1801 T12: -0.0273 REMARK 3 T13: -0.0265 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 0.6767 L22: 0.3501 REMARK 3 L33: 21.1800 L12: -0.0458 REMARK 3 L13: -1.4874 L23: -0.9703 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.2225 S13: 0.0401 REMARK 3 S21: 0.1385 S22: 0.0092 S23: -0.1046 REMARK 3 S31: -0.1321 S32: 0.8472 S33: 0.0524 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 41 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4239 12.8580 31.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.0529 T22: 0.0776 REMARK 3 T33: 0.1028 T12: 0.0189 REMARK 3 T13: -0.0040 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.8143 L22: 0.7110 REMARK 3 L33: 18.4585 L12: 0.1340 REMARK 3 L13: -1.1957 L23: -1.9890 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: -0.1810 S13: 0.1203 REMARK 3 S21: 0.1757 S22: 0.1226 S23: 0.0183 REMARK 3 S31: -0.3665 S32: 0.1216 S33: -0.2133 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 38.8899 20.7656 28.5111 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.0679 REMARK 3 T33: 0.1709 T12: -0.0164 REMARK 3 T13: 0.0052 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 0.7478 L22: 0.4760 REMARK 3 L33: 17.8105 L12: -0.0445 REMARK 3 L13: -0.7998 L23: -1.1119 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.2244 S13: 0.1500 REMARK 3 S21: 0.1885 S22: 0.0158 S23: -0.0369 REMARK 3 S31: -0.8753 S32: 0.3085 S33: -0.0557 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 41 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1837 12.4406 32.0887 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.0954 REMARK 3 T33: 0.1003 T12: 0.0232 REMARK 3 T13: 0.0195 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.9264 L22: 0.7043 REMARK 3 L33: 22.8931 L12: 0.2044 REMARK 3 L13: 0.1649 L23: -1.9569 REMARK 3 S TENSOR REMARK 3 S11: 0.1401 S12: -0.1885 S13: 0.0680 REMARK 3 S21: 0.1941 S22: 0.1281 S23: 0.1180 REMARK 3 S31: -0.2540 S32: -0.0972 S33: -0.2682 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 42 C 75 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5658 17.2456 28.4493 REMARK 3 T TENSOR REMARK 3 T11: 0.1183 T22: 0.0909 REMARK 3 T33: 0.1676 T12: 0.0327 REMARK 3 T13: 0.0032 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.6326 L22: 0.6510 REMARK 3 L33: 24.8899 L12: 0.0568 REMARK 3 L13: 0.1755 L23: -2.0547 REMARK 3 S TENSOR REMARK 3 S11: -0.1205 S12: -0.1793 S13: 0.1093 REMARK 3 S21: 0.1925 S22: -0.1041 S23: 0.0020 REMARK 3 S31: -0.7332 S32: -0.1318 S33: 0.2246 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 41 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8423 7.2129 32.0011 REMARK 3 T TENSOR REMARK 3 T11: 0.0544 T22: 0.0578 REMARK 3 T33: 0.0972 T12: 0.0101 REMARK 3 T13: 0.0113 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.9003 L22: 0.7850 REMARK 3 L33: 20.5194 L12: -0.1621 REMARK 3 L13: 1.1972 L23: -1.8274 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: -0.1968 S13: -0.0057 REMARK 3 S21: 0.1747 S22: 0.1229 S23: 0.0861 REMARK 3 S31: -0.1336 S32: -0.2212 S33: -0.1931 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 42 D 74 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6261 7.2912 28.2192 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.1414 REMARK 3 T33: 0.1665 T12: 0.0128 REMARK 3 T13: 0.0379 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.5976 L22: 0.2985 REMARK 3 L33: 18.7190 L12: -0.0933 REMARK 3 L13: 0.5292 L23: -0.8453 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: -0.1635 S13: 0.0893 REMARK 3 S21: 0.1360 S22: -0.0585 S23: 0.0608 REMARK 3 S31: -0.5785 S32: -0.6184 S33: 0.1195 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 41 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6888 -0.7219 32.1416 REMARK 3 T TENSOR REMARK 3 T11: 0.0582 T22: 0.0878 REMARK 3 T33: 0.1072 T12: 0.0261 REMARK 3 T13: 0.0340 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 0.8157 L22: 0.8502 REMARK 3 L33: 28.6659 L12: -0.2510 REMARK 3 L13: 2.1418 L23: -1.1111 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: -0.2070 S13: -0.0922 REMARK 3 S21: 0.1923 S22: 0.2156 S23: 0.1478 REMARK 3 S31: -0.0198 S32: -0.4045 S33: -0.2645 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 42 E 74 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9754 -5.5241 28.1440 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.1782 REMARK 3 T33: 0.1741 T12: -0.0209 REMARK 3 T13: 0.0239 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.6353 L22: 0.6383 REMARK 3 L33: 19.7480 L12: -0.2332 REMARK 3 L13: 3.0993 L23: 0.4149 REMARK 3 S TENSOR REMARK 3 S11: -0.0982 S12: -0.1973 S13: -0.0168 REMARK 3 S21: 0.2087 S22: -0.0214 S23: 0.1260 REMARK 3 S31: 0.0333 S32: -1.1150 S33: 0.1195 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 1 K 41 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4346 27.6806 31.9920 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.0926 REMARK 3 T33: 0.0845 T12: -0.0497 REMARK 3 T13: 0.0085 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.0293 L22: 0.8977 REMARK 3 L33: 16.3012 L12: 0.2160 REMARK 3 L13: 1.6772 L23: 1.3158 REMARK 3 S TENSOR REMARK 3 S11: 0.2277 S12: -0.2777 S13: -0.0831 REMARK 3 S21: 0.2419 S22: 0.0242 S23: 0.0330 REMARK 3 S31: 0.3721 S32: -0.0211 S33: -0.2519 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 42 K 75 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3310 19.4250 28.7553 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.1794 REMARK 3 T33: 0.1691 T12: -0.0711 REMARK 3 T13: 0.0176 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 0.8025 L22: 0.6675 REMARK 3 L33: 17.0155 L12: -0.2127 REMARK 3 L13: 0.1262 L23: 1.1952 REMARK 3 S TENSOR REMARK 3 S11: -0.1580 S12: -0.2200 S13: -0.0776 REMARK 3 S21: 0.2685 S22: -0.1984 S23: 0.0213 REMARK 3 S31: 0.4584 S32: -0.3845 S33: 0.3564 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 41 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8306 24.7412 31.9118 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.1450 REMARK 3 T33: 0.1118 T12: -0.0437 REMARK 3 T13: -0.0251 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 0.5614 L22: 1.0387 REMARK 3 L33: 22.4258 L12: 0.3928 REMARK 3 L13: 1.1757 L23: 2.2659 REMARK 3 S TENSOR REMARK 3 S11: 0.1591 S12: -0.2517 S13: -0.1004 REMARK 3 S21: 0.2680 S22: -0.0265 S23: -0.0921 REMARK 3 S31: 0.3130 S32: -0.0084 S33: -0.1326 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 42 L 75 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2142 17.4525 28.8383 REMARK 3 T TENSOR REMARK 3 T11: 0.1959 T22: 0.1567 REMARK 3 T33: 0.2042 T12: -0.0259 REMARK 3 T13: -0.0385 T23: 0.0795 REMARK 3 L TENSOR REMARK 3 L11: 0.8388 L22: 0.5073 REMARK 3 L33: 19.1088 L12: -0.1622 REMARK 3 L13: 0.2957 L23: 2.5669 REMARK 3 S TENSOR REMARK 3 S11: -0.1333 S12: -0.2901 S13: -0.0957 REMARK 3 S21: 0.2648 S22: -0.0281 S23: -0.0275 REMARK 3 S31: 0.9438 S32: -0.0898 S33: 0.1614 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 1 M 41 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1408 26.7662 32.2816 REMARK 3 T TENSOR REMARK 3 T11: 0.1108 T22: 0.1586 REMARK 3 T33: 0.1014 T12: -0.0632 REMARK 3 T13: -0.0509 T23: 0.0636 REMARK 3 L TENSOR REMARK 3 L11: 0.5346 L22: 0.8432 REMARK 3 L33: 19.4112 L12: 0.2218 REMARK 3 L13: -0.1649 L23: 2.2691 REMARK 3 S TENSOR REMARK 3 S11: 0.1888 S12: -0.2711 S13: -0.1269 REMARK 3 S21: 0.2574 S22: 0.0073 S23: -0.1047 REMARK 3 S31: 0.3234 S32: 0.2773 S33: -0.1961 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 42 M 75 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7288 23.4757 28.2371 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.1482 REMARK 3 T33: 0.1875 T12: 0.0109 REMARK 3 T13: -0.0584 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 1.1782 L22: 1.1265 REMARK 3 L33: 23.2596 L12: 0.2986 REMARK 3 L13: -0.4948 L23: 3.2909 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: -0.3454 S13: -0.1579 REMARK 3 S21: 0.3699 S22: -0.0902 S23: -0.1789 REMARK 3 S31: 0.9156 S32: 0.2061 S33: 0.0324 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 1 N 41 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4634 33.1184 32.7265 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.1287 REMARK 3 T33: 0.1133 T12: -0.0479 REMARK 3 T13: -0.0406 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 0.9018 L22: 0.8150 REMARK 3 L33: 18.7175 L12: 0.2065 REMARK 3 L13: -1.0846 L23: 1.5285 REMARK 3 S TENSOR REMARK 3 S11: 0.1900 S12: -0.3048 S13: -0.0449 REMARK 3 S21: 0.2784 S22: 0.0028 S23: -0.0935 REMARK 3 S31: 0.4727 S32: 0.1235 S33: -0.1927 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 42 N 75 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4917 34.6739 28.8539 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.1482 REMARK 3 T33: 0.1543 T12: -0.0186 REMARK 3 T13: -0.0564 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 1.2250 L22: 0.7430 REMARK 3 L33: 16.7164 L12: 0.1914 REMARK 3 L13: -1.3836 L23: 0.7381 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: -0.3337 S13: -0.0718 REMARK 3 S21: 0.2589 S22: -0.0846 S23: -0.1056 REMARK 3 S31: 0.3562 S32: 0.8266 S33: 0.0299 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 1 O 41 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9275 41.4142 32.3927 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.0980 REMARK 3 T33: 0.1003 T12: -0.0524 REMARK 3 T13: -0.0482 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.1109 L22: 0.5920 REMARK 3 L33: 17.0144 L12: 0.0403 REMARK 3 L13: -2.0000 L23: 0.4433 REMARK 3 S TENSOR REMARK 3 S11: 0.2114 S12: -0.2961 S13: 0.0093 REMARK 3 S21: 0.1879 S22: 0.0269 S23: -0.1435 REMARK 3 S31: -0.0227 S32: 0.1390 S33: -0.2382 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 42 O 75 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4891 47.4394 28.7738 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.1827 REMARK 3 T33: 0.1583 T12: -0.0836 REMARK 3 T13: -0.0288 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.9209 L22: 0.8146 REMARK 3 L33: 20.2852 L12: -0.0066 REMARK 3 L13: -2.3151 L23: -0.8202 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: -0.3158 S13: -0.0066 REMARK 3 S21: 0.2430 S22: -0.1226 S23: -0.0293 REMARK 3 S31: -0.0570 S32: 0.8932 S33: 0.1036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5BQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42710 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.6.0117 REMARK 200 STARTING MODEL: PDB ENTRY 4F4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 68% MPD, 8% PROPYLENE GLYCOL, 0.3 M REMARK 280 SODIUM CHLORIDE, 2 MM MAGNESIUM SULFATE, 50 MM MES, PH 5.5, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.98750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 37.98750 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 244.60900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.98750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.30450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.98750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 366.91350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.98750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 366.91350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.98750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.30450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 37.98750 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 37.98750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 244.60900 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 37.98750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 37.98750 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 244.60900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 37.98750 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 366.91350 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 37.98750 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 122.30450 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 37.98750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 122.30450 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 37.98750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 366.91350 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 37.98750 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 37.98750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 244.60900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -416.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.97500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -418.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L, M, N, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 75.97500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 75 REMARK 465 VAL A 76 REMARK 465 VAL B 76 REMARK 465 VAL C 76 REMARK 465 GLY D 75 REMARK 465 VAL D 76 REMARK 465 GLY E 75 REMARK 465 VAL E 76 REMARK 465 VAL K 76 REMARK 465 VAL L 76 REMARK 465 VAL M 76 REMARK 465 VAL N 76 REMARK 465 VAL O 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 FME A 1 CG SD CE REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 FME B 1 CG SD CE REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 FME C 1 SD CE REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 LEU C 63 CG CD1 CD2 REMARK 470 FME D 1 CG SD CE REMARK 470 GLN D 2 CG CD OE1 NE2 REMARK 470 FME E 1 SD CE REMARK 470 GLN E 2 CG CD OE1 NE2 REMARK 470 FME K 1 CG SD CE REMARK 470 GLN K 2 CG CD OE1 NE2 REMARK 470 LEU K 5 CG CD1 CD2 REMARK 470 FME L 1 CG SD CE REMARK 470 GLN L 2 CG CD OE1 NE2 REMARK 470 LYS L 8 CG CD CE NZ REMARK 470 FME M 1 CG SD CE REMARK 470 GLN M 2 CG CD OE1 NE2 REMARK 470 PHE M 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN N 2 CD OE1 NE2 REMARK 470 FME O 1 SD CE REMARK 470 GLN O 2 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 FME B 1 CA - C - N ANGL. DEV. = 19.4 DEGREES REMARK 500 FME B 1 O - C - N ANGL. DEV. = -19.1 DEGREES REMARK 500 GLN B 2 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 FME L 1 O - C - N ANGL. DEV. = -16.3 DEGREES REMARK 500 FME N 1 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 FME O 1 O - C - N ANGL. DEV. = -12.4 DEGREES REMARK 500 GLN O 2 C - N - CA ANGL. DEV. = 19.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE C 74 -54.53 -128.18 REMARK 500 ASN E 40 79.46 -150.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 FME O 1 GLN O 2 147.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 FME B 1 -12.38 REMARK 500 FME L 1 -19.21 REMARK 500 FME M 1 -17.90 REMARK 500 FME N 1 10.62 REMARK 500 FME O 1 -17.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E21 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E21 B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E21 E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E21 K 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E21 L 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E21 M 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E21 O 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BPS RELATED DB: PDB REMARK 900 RELATED ID: 5BQ6 RELATED DB: PDB REMARK 900 RELATED ID: 5BQA RELATED DB: PDB DBREF 5BQJ A 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQJ B 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQJ C 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQJ D 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQJ E 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQJ K 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQJ L 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQJ M 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQJ N 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BQJ O 2 76 UNP P61829 ATP9_YEAST 2 76 SEQADV 5BQJ FME A 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQJ FME B 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQJ FME C 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQJ FME D 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQJ FME E 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQJ FME K 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQJ FME L 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQJ FME M 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQJ FME N 1 UNP P61829 INITIATING METHIONINE SEQADV 5BQJ FME O 1 UNP P61829 INITIATING METHIONINE SEQRES 1 A 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 A 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 A 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 A 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 A 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 A 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 B 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 B 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 B 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 B 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 B 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 B 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 C 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 C 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 C 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 C 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 C 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 C 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 D 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 D 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 D 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 D 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 D 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 D 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 E 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 E 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 E 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 E 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 E 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 E 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 K 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 K 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 K 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 K 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 K 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 K 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 L 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 L 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 L 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 L 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 L 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 L 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 M 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 M 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 M 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 M 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 M 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 M 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 N 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 N 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 N 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 N 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 N 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 N 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 O 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 O 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 O 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 O 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 O 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 O 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL HET FME A 1 7 HET FME B 1 7 HET FME C 1 8 HET FME D 1 7 HET FME E 1 8 HET FME K 1 7 HET FME L 1 7 HET FME M 1 7 HET FME N 1 10 HET FME O 1 8 HET E21 B 101 57 HET E21 B 102 57 HET E21 E 101 57 HET E21 K 101 57 HET E21 L 101 57 HET E21 M 101 57 HET E21 O 101 57 HETNAM FME N-FORMYLMETHIONINE HETNAM E21 21-HYDROXY-OLIGOMYCIN FORMUL 1 FME 10(C6 H11 N O3 S) FORMUL 11 E21 7(C45 H74 O12) FORMUL 18 HOH *129(H2 O) HELIX 1 AA1 FME A 1 SER A 15 1 15 HELIX 2 AA2 GLY A 18 ASN A 40 1 23 HELIX 3 AA3 ILE A 43 PHE A 74 1 32 HELIX 4 AA4 GLN B 2 SER B 15 1 14 HELIX 5 AA5 GLY B 18 ASN B 40 1 23 HELIX 6 AA6 ILE B 43 GLY B 75 1 33 HELIX 7 AA7 GLN C 2 SER C 15 1 14 HELIX 8 AA8 GLY C 18 ASN C 40 1 23 HELIX 9 AA9 ILE C 43 PHE C 74 1 32 HELIX 10 AB1 GLN D 2 SER D 15 1 14 HELIX 11 AB2 GLY D 18 ASN D 40 1 23 HELIX 12 AB3 ILE D 43 PHE D 74 1 32 HELIX 13 AB4 GLN E 2 SER E 15 1 14 HELIX 14 AB5 GLY E 18 ASN E 40 1 23 HELIX 15 AB6 ILE E 43 PHE E 74 1 32 HELIX 16 AB7 GLN K 2 SER K 15 1 14 HELIX 17 AB8 GLY K 18 ASN K 40 1 23 HELIX 18 AB9 ILE K 43 GLY K 75 1 33 HELIX 19 AC1 GLN L 2 SER L 15 1 14 HELIX 20 AC2 GLY L 18 ASN L 40 1 23 HELIX 21 AC3 ILE L 43 GLY L 75 1 33 HELIX 22 AC4 GLN M 2 SER M 15 1 14 HELIX 23 AC5 GLY M 18 ASN M 40 1 23 HELIX 24 AC6 ILE M 43 GLY M 75 1 33 HELIX 25 AC7 GLN N 2 SER N 15 1 14 HELIX 26 AC8 GLY N 18 ASN N 40 1 23 HELIX 27 AC9 ILE N 43 GLY N 75 1 33 HELIX 28 AD1 GLN O 2 THR O 16 1 15 HELIX 29 AD2 GLY O 18 ASN O 40 1 23 HELIX 30 AD3 ILE O 43 PHE O 74 1 32 LINK C FME A 1 N GLN A 2 1555 1555 1.42 LINK C FME B 1 N GLN B 2 1555 1555 1.43 LINK C FME C 1 N GLN C 2 1555 1555 1.42 LINK C FME D 1 N GLN D 2 1555 1555 1.43 LINK C FME E 1 N GLN E 2 1555 1555 1.42 LINK C FME K 1 N GLN K 2 1555 1555 1.42 LINK C FME L 1 N GLN L 2 1555 1555 1.43 LINK C FME M 1 N GLN M 2 1555 1555 1.42 LINK C FME N 1 N GLN N 2 1555 1555 1.42 LINK C FME O 1 N GLN O 2 1555 1555 1.42 SITE 1 AC1 7 ALA B 56 LEU B 57 ALA B 60 PHE B 64 SITE 2 AC1 7 E21 B 102 ALA C 56 LEU C 63 SITE 1 AC2 13 ALA A 56 LEU A 57 ALA A 60 PHE A 64 SITE 2 AC2 13 ILE B 52 PHE B 55 ALA B 56 GLU B 59 SITE 3 AC2 13 LEU B 63 E21 B 101 HOH B 204 E21 K 101 SITE 4 AC2 13 E21 O 101 SITE 1 AC3 7 ALA D 56 ALA D 60 PHE E 55 ALA E 56 SITE 2 AC3 7 GLU E 59 ALA E 60 LEU E 63 SITE 1 AC4 17 ILE A 52 PHE A 55 ALA A 56 E21 B 102 SITE 2 AC4 17 LEU E 53 LEU E 57 ILE K 52 ALA K 56 SITE 3 AC4 17 GLU K 59 ALA K 60 GLY K 62 LEU K 63 SITE 4 AC4 17 HOH K 209 E21 L 101 ALA O 56 ALA O 60 SITE 5 AC4 17 PHE O 64 SITE 1 AC5 9 ALA K 56 LEU K 57 ALA K 60 PHE K 64 SITE 2 AC5 9 E21 K 101 ALA L 56 GLU L 59 LEU L 63 SITE 3 AC5 9 E21 M 101 SITE 1 AC6 10 LEU C 53 PHE D 55 ALA L 56 ALA L 60 SITE 2 AC6 10 PHE L 64 E21 L 101 PHE M 55 ALA M 56 SITE 3 AC6 10 GLU M 59 LEU M 63 SITE 1 AC7 8 E21 B 102 HOH B 204 ALA N 56 ALA N 60 SITE 2 AC7 8 PHE O 55 ALA O 56 GLU O 59 LEU O 63 CRYST1 75.975 75.975 489.218 90.00 90.00 90.00 I 41 2 2 160 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013162 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002044 0.00000 HETATM 1 N FME A 1 47.017 12.636 64.418 1.00 57.41 N ANISOU 1 N FME A 1 9565 8124 4121 -175 -304 -1366 N HETATM 2 CN FME A 1 45.703 12.508 64.180 1.00 56.68 C ANISOU 2 CN FME A 1 9514 7821 4201 409 -178 -1267 C HETATM 3 O1 FME A 1 45.279 11.768 63.297 1.00 53.44 O ANISOU 3 O1 FME A 1 8688 7520 4094 647 -186 -1140 O HETATM 4 CA FME A 1 47.943 12.983 63.347 1.00 57.28 C ANISOU 4 CA FME A 1 9550 8156 4056 -632 -362 -1421 C HETATM 5 CB FME A 1 49.222 13.585 63.917 1.00 61.09 C ANISOU 5 CB FME A 1 10188 8942 4078 -1414 -454 -1574 C HETATM 6 C FME A 1 48.293 11.795 62.498 1.00 52.96 C ANISOU 6 C FME A 1 8268 7995 3857 -475 -469 -1275 C HETATM 7 O FME A 1 48.540 11.990 61.289 1.00 52.56 O ANISOU 7 O FME A 1 8208 7865 3897 -594 -467 -1272 O