HEADER VIRAL PROTEIN 29-MAY-15 5BQK TITLE CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF ICP27 PROTEIN FROM HSV-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ICP27; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 328-598; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: HHV-1; SOURCE 4 ORGANISM_TAXID: 10298; SOURCE 5 GENE: UL54; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS ICP27, HSV-1, ALPHA-HELICAL, C-TERMINAL DOMAIN, UL54, ZINC-BINDING KEYWDS 2 MOTIF, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.PATEL,V.RAJAKANNAN,S.DAHLROTH,P.NORDLUND REVDAT 2 12-AUG-15 5BQK 1 JRNL REVDAT 1 01-JUL-15 5BQK 0 JRNL AUTH V.PATEL,S.L.DAHLROTH,V.RAJAKANNAN,H.T.HO,T.CORNVIK, JRNL AUTH 2 P.NORDLUND JRNL TITL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE MULTIFUNCTIONAL JRNL TITL 2 ICP27 PROTEIN FROM HERPES SIMPLEX VIRUS 1. JRNL REF J.VIROL. V. 89 8828 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 26085142 JRNL DOI 10.1128/JVI.00441-15 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 89418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4475 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 328 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -1.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.223 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6221 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8455 ; 1.829 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 794 ; 6.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;37.485 ;21.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 963 ;14.920 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;20.002 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 965 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4721 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3994 ; 1.060 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6386 ; 1.791 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2227 ; 3.131 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2069 ; 4.429 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5BQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000205194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97893 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89418 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.997 REMARK 200 RESOLUTION RANGE LOW (A) : 23.795 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM THIOCYANATE, BENZAMIDINE REMARK 280 HYDROCHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.49150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.16750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.49150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 60.16750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 156.98300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 298 REMARK 465 GLN A 299 REMARK 465 GLY A 300 REMARK 465 GLY A 301 REMARK 465 ALA B 242 REMARK 465 GLY B 298 REMARK 465 GLN B 299 REMARK 465 GLY B 300 REMARK 465 GLY B 301 REMARK 465 GLY C 298 REMARK 465 GLN C 299 REMARK 465 GLY C 300 REMARK 465 GLY C 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 GLN A 274 CG CD OE1 NE2 REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 GLU A 313 OE1 OE2 REMARK 470 GLN A 399 CD OE1 NE2 REMARK 470 LYS A 403 CD CE NZ REMARK 470 GLU A 412 OE1 OE2 REMARK 470 ARG A 418 NE CZ NH1 NH2 REMARK 470 GLU A 441 CD OE1 OE2 REMARK 470 ARG A 442 CD NE CZ NH1 NH2 REMARK 470 VAL A 444 CG1 CG2 REMARK 470 VAL B 262 CG1 CG2 REMARK 470 ASN B 289 CG OD1 ND2 REMARK 470 ASP B 304 CG OD1 OD2 REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 ARG B 324 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 399 CG CD OE1 NE2 REMARK 470 ARG B 418 NE CZ NH1 NH2 REMARK 470 GLU B 441 OE1 OE2 REMARK 470 ARG B 442 CD NE CZ NH1 NH2 REMARK 470 SER B 510 OG REMARK 470 ARG C 264 CD NE CZ NH1 NH2 REMARK 470 GLN C 274 CG CD OE1 NE2 REMARK 470 ASN C 289 CG OD1 ND2 REMARK 470 GLU C 306 CG CD OE1 OE2 REMARK 470 GLU C 313 OE1 OE2 REMARK 470 ARG C 331 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 418 CD NE CZ NH1 NH2 REMARK 470 ARG C 442 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 444 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 313 CG GLU A 313 CD 0.130 REMARK 500 ALA A 333 CA ALA A 333 CB 0.144 REMARK 500 GLU C 313 CG GLU C 313 CD 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 345 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG C 374 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 424 -169.86 -161.43 REMARK 500 VAL A 501 -47.57 -132.59 REMARK 500 ASN B 289 4.85 53.68 REMARK 500 LYS B 423 -4.41 -141.85 REMARK 500 VAL B 501 -39.91 -135.34 REMARK 500 ASP C 243 124.11 -36.32 REMARK 500 PRO C 286 106.46 -50.67 REMARK 500 ALA C 288 167.60 159.26 REMARK 500 VAL C 444 152.19 -39.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HIS A 479 NE2 114.2 REMARK 620 3 CYS A 483 SG 103.5 101.1 REMARK 620 4 CYS A 488 SG 115.2 107.6 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HIS B 479 NE2 125.5 REMARK 620 3 CYS B 483 SG 103.5 106.7 REMARK 620 4 CYS B 488 SG 118.8 91.2 110.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 400 SG REMARK 620 2 HIS C 479 NE2 111.5 REMARK 620 3 CYS C 483 SG 107.5 102.9 REMARK 620 4 CYS C 488 SG 117.0 100.3 116.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 601 DBREF 5BQK A 242 512 UNP I3TCB5 I3TCB5_HHV1 328 598 DBREF 5BQK B 242 512 UNP I3TCB5 I3TCB5_HHV1 328 598 DBREF 5BQK C 242 512 UNP I3TCB5 I3TCB5_HHV1 328 598 SEQRES 1 A 271 ALA ASP THR ILE ASP ALA THR THR ARG LEU VAL LEU ARG SEQRES 2 A 271 SER ILE SER GLU ARG ALA ALA VAL ASP ARG ILE SER GLU SEQRES 3 A 271 SER PHE GLY ARG SER ALA GLN VAL MSE HIS ASP PRO PHE SEQRES 4 A 271 GLY GLY GLN PRO PHE PRO ALA ALA ASN SER PRO TRP ALA SEQRES 5 A 271 PRO VAL LEU ALA GLY GLN GLY GLY PRO PHE ASP ALA GLU SEQRES 6 A 271 THR ARG ARG VAL SER TRP GLU THR LEU VAL ALA HIS GLY SEQRES 7 A 271 PRO SER LEU TYR ARG THR PHE ALA GLY ASN PRO ARG ALA SEQRES 8 A 271 ALA SER THR ALA LYS ALA MSE ARG ASP CYS VAL LEU ARG SEQRES 9 A 271 GLN GLU ASN PHE ILE GLU ALA LEU ALA SER ALA ASP GLU SEQRES 10 A 271 THR LEU ALA TRP CYS LYS MSE CYS ILE HIS HIS ASN LEU SEQRES 11 A 271 PRO LEU ARG PRO GLN ASP PRO ILE ILE GLY THR ALA ALA SEQRES 12 A 271 ALA VAL LEU ASP ASN LEU ALA THR ARG LEU ARG PRO PHE SEQRES 13 A 271 LEU GLN CYS TYR LEU LYS ALA ARG GLY LEU CYS GLY LEU SEQRES 14 A 271 ASP GLU LEU CYS SER ARG ARG ARG LEU ALA ASP ILE LYS SEQRES 15 A 271 ASP ILE ALA SER PHE VAL PHE VAL ILE LEU ALA ARG LEU SEQRES 16 A 271 ALA ASN ARG VAL GLU ARG GLY VAL ALA GLU ILE ASP TYR SEQRES 17 A 271 ALA THR LEU GLY VAL GLY VAL GLY GLU LYS MSE HIS PHE SEQRES 18 A 271 TYR LEU PRO GLY ALA CYS MSE ALA GLY LEU ILE GLU ILE SEQRES 19 A 271 LEU ASP THR HIS ARG GLN GLU CYS SER SER ARG VAL CYS SEQRES 20 A 271 GLU LEU THR ALA SER HIS ILE VAL ALA PRO PRO TYR VAL SEQRES 21 A 271 HIS GLY LYS TYR PHE TYR CYS ASN SER LEU PHE SEQRES 1 B 271 ALA ASP THR ILE ASP ALA THR THR ARG LEU VAL LEU ARG SEQRES 2 B 271 SER ILE SER GLU ARG ALA ALA VAL ASP ARG ILE SER GLU SEQRES 3 B 271 SER PHE GLY ARG SER ALA GLN VAL MSE HIS ASP PRO PHE SEQRES 4 B 271 GLY GLY GLN PRO PHE PRO ALA ALA ASN SER PRO TRP ALA SEQRES 5 B 271 PRO VAL LEU ALA GLY GLN GLY GLY PRO PHE ASP ALA GLU SEQRES 6 B 271 THR ARG ARG VAL SER TRP GLU THR LEU VAL ALA HIS GLY SEQRES 7 B 271 PRO SER LEU TYR ARG THR PHE ALA GLY ASN PRO ARG ALA SEQRES 8 B 271 ALA SER THR ALA LYS ALA MSE ARG ASP CYS VAL LEU ARG SEQRES 9 B 271 GLN GLU ASN PHE ILE GLU ALA LEU ALA SER ALA ASP GLU SEQRES 10 B 271 THR LEU ALA TRP CYS LYS MSE CYS ILE HIS HIS ASN LEU SEQRES 11 B 271 PRO LEU ARG PRO GLN ASP PRO ILE ILE GLY THR ALA ALA SEQRES 12 B 271 ALA VAL LEU ASP ASN LEU ALA THR ARG LEU ARG PRO PHE SEQRES 13 B 271 LEU GLN CYS TYR LEU LYS ALA ARG GLY LEU CYS GLY LEU SEQRES 14 B 271 ASP GLU LEU CYS SER ARG ARG ARG LEU ALA ASP ILE LYS SEQRES 15 B 271 ASP ILE ALA SER PHE VAL PHE VAL ILE LEU ALA ARG LEU SEQRES 16 B 271 ALA ASN ARG VAL GLU ARG GLY VAL ALA GLU ILE ASP TYR SEQRES 17 B 271 ALA THR LEU GLY VAL GLY VAL GLY GLU LYS MSE HIS PHE SEQRES 18 B 271 TYR LEU PRO GLY ALA CYS MSE ALA GLY LEU ILE GLU ILE SEQRES 19 B 271 LEU ASP THR HIS ARG GLN GLU CYS SER SER ARG VAL CYS SEQRES 20 B 271 GLU LEU THR ALA SER HIS ILE VAL ALA PRO PRO TYR VAL SEQRES 21 B 271 HIS GLY LYS TYR PHE TYR CYS ASN SER LEU PHE SEQRES 1 C 271 ALA ASP THR ILE ASP ALA THR THR ARG LEU VAL LEU ARG SEQRES 2 C 271 SER ILE SER GLU ARG ALA ALA VAL ASP ARG ILE SER GLU SEQRES 3 C 271 SER PHE GLY ARG SER ALA GLN VAL MSE HIS ASP PRO PHE SEQRES 4 C 271 GLY GLY GLN PRO PHE PRO ALA ALA ASN SER PRO TRP ALA SEQRES 5 C 271 PRO VAL LEU ALA GLY GLN GLY GLY PRO PHE ASP ALA GLU SEQRES 6 C 271 THR ARG ARG VAL SER TRP GLU THR LEU VAL ALA HIS GLY SEQRES 7 C 271 PRO SER LEU TYR ARG THR PHE ALA GLY ASN PRO ARG ALA SEQRES 8 C 271 ALA SER THR ALA LYS ALA MSE ARG ASP CYS VAL LEU ARG SEQRES 9 C 271 GLN GLU ASN PHE ILE GLU ALA LEU ALA SER ALA ASP GLU SEQRES 10 C 271 THR LEU ALA TRP CYS LYS MSE CYS ILE HIS HIS ASN LEU SEQRES 11 C 271 PRO LEU ARG PRO GLN ASP PRO ILE ILE GLY THR ALA ALA SEQRES 12 C 271 ALA VAL LEU ASP ASN LEU ALA THR ARG LEU ARG PRO PHE SEQRES 13 C 271 LEU GLN CYS TYR LEU LYS ALA ARG GLY LEU CYS GLY LEU SEQRES 14 C 271 ASP GLU LEU CYS SER ARG ARG ARG LEU ALA ASP ILE LYS SEQRES 15 C 271 ASP ILE ALA SER PHE VAL PHE VAL ILE LEU ALA ARG LEU SEQRES 16 C 271 ALA ASN ARG VAL GLU ARG GLY VAL ALA GLU ILE ASP TYR SEQRES 17 C 271 ALA THR LEU GLY VAL GLY VAL GLY GLU LYS MSE HIS PHE SEQRES 18 C 271 TYR LEU PRO GLY ALA CYS MSE ALA GLY LEU ILE GLU ILE SEQRES 19 C 271 LEU ASP THR HIS ARG GLN GLU CYS SER SER ARG VAL CYS SEQRES 20 C 271 GLU LEU THR ALA SER HIS ILE VAL ALA PRO PRO TYR VAL SEQRES 21 C 271 HIS GLY LYS TYR PHE TYR CYS ASN SER LEU PHE MODRES 5BQK MSE A 276 MET MODIFIED RESIDUE MODRES 5BQK MSE A 339 MET MODIFIED RESIDUE MODRES 5BQK MSE A 365 MET MODIFIED RESIDUE MODRES 5BQK MSE A 460 MET MODIFIED RESIDUE MODRES 5BQK MSE A 469 MET MODIFIED RESIDUE MODRES 5BQK MSE B 276 MET MODIFIED RESIDUE MODRES 5BQK MSE B 339 MET MODIFIED RESIDUE MODRES 5BQK MSE B 365 MET MODIFIED RESIDUE MODRES 5BQK MSE B 460 MET MODIFIED RESIDUE MODRES 5BQK MSE B 469 MET MODIFIED RESIDUE MODRES 5BQK MSE C 276 MET MODIFIED RESIDUE MODRES 5BQK MSE C 339 MET MODIFIED RESIDUE MODRES 5BQK MSE C 365 MET MODIFIED RESIDUE MODRES 5BQK MSE C 460 MET MODIFIED RESIDUE MODRES 5BQK MSE C 469 MET MODIFIED RESIDUE HET MSE A 276 8 HET MSE A 339 8 HET MSE A 365 8 HET MSE A 460 8 HET MSE A 469 8 HET MSE B 276 8 HET MSE B 339 8 HET MSE B 365 8 HET MSE B 460 8 HET MSE B 469 8 HET MSE C 276 8 HET MSE C 339 8 HET MSE C 365 8 HET MSE C 460 8 HET MSE C 469 8 HET ZN A 601 1 HET ZN B 601 1 HET ZN C 601 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *283(H2 O) HELIX 1 AA1 ASP A 246 SER A 255 1 10 HELIX 2 AA2 SER A 255 ALA A 260 1 6 HELIX 3 AA3 ALA A 261 ASP A 278 1 18 HELIX 4 AA4 TRP A 292 ALA A 297 1 6 HELIX 5 AA5 SER A 311 ASN A 329 1 19 HELIX 6 AA6 ASN A 329 GLU A 347 1 19 HELIX 7 AA7 ASN A 348 HIS A 369 1 22 HELIX 8 AA8 ILE A 379 GLY A 381 5 3 HELIX 9 AA9 THR A 382 ARG A 405 1 24 HELIX 10 AB1 GLY A 409 ARG A 417 1 9 HELIX 11 AB2 ARG A 418 ILE A 422 5 5 HELIX 12 AB3 ASP A 424 GLY A 443 1 20 HELIX 13 AB4 ASP A 448 GLY A 453 5 6 HELIX 14 AB5 GLY A 466 HIS A 479 1 14 HELIX 15 AB6 ARG A 480 GLU A 482 5 3 HELIX 16 AB7 SER A 485 ALA A 497 1 13 HELIX 17 AB8 ASP B 246 ALA B 260 1 15 HELIX 18 AB9 ALA B 261 MSE B 276 1 16 HELIX 19 AC1 TRP B 292 ALA B 297 1 6 HELIX 20 AC2 SER B 311 ASN B 329 1 19 HELIX 21 AC3 ASN B 329 ARG B 345 1 17 HELIX 22 AC4 ASN B 348 HIS B 369 1 22 HELIX 23 AC5 ASP B 377 THR B 382 1 6 HELIX 24 AC6 THR B 382 ARG B 405 1 24 HELIX 25 AC7 GLY B 409 ARG B 417 1 9 HELIX 26 AC8 ARG B 418 ILE B 422 5 5 HELIX 27 AC9 ASP B 424 ARG B 442 1 19 HELIX 28 AD1 ASP B 448 GLY B 453 5 6 HELIX 29 AD2 GLY B 466 CYS B 483 1 18 HELIX 30 AD3 SER B 485 ALA B 497 1 13 HELIX 31 AD4 ASP C 246 ALA C 260 1 15 HELIX 32 AD5 ALA C 261 ASP C 278 1 18 HELIX 33 AD6 TRP C 292 ALA C 297 1 6 HELIX 34 AD7 SER C 311 GLY C 328 1 18 HELIX 35 AD8 ASN C 329 GLN C 346 1 18 HELIX 36 AD9 ASN C 348 HIS C 369 1 22 HELIX 37 AE1 ILE C 379 GLY C 381 5 3 HELIX 38 AE2 THR C 382 ARG C 405 1 24 HELIX 39 AE3 GLY C 409 ARG C 417 1 9 HELIX 40 AE4 ARG C 418 ILE C 422 5 5 HELIX 41 AE5 ASP C 424 ARG C 442 1 19 HELIX 42 AE6 ASP C 448 GLY C 453 5 6 HELIX 43 AE7 GLY C 466 HIS C 479 1 14 HELIX 44 AE8 ARG C 480 CYS C 483 5 4 HELIX 45 AE9 SER C 485 ALA C 497 1 13 LINK C VAL A 275 N MSE A 276 1555 1555 1.35 LINK C MSE A 276 N HIS A 277 1555 1555 1.34 LINK C ALA A 338 N MSE A 339 1555 1555 1.30 LINK C MSE A 339 N ARG A 340 1555 1555 1.34 LINK C LYS A 364 N MSE A 365 1555 1555 1.32 LINK C MSE A 365 N CYS A 366 1555 1555 1.34 LINK SG CYS A 400 ZN ZN A 601 1555 1555 2.13 LINK C LYS A 459 N MSE A 460 1555 1555 1.33 LINK C MSE A 460 N HIS A 461 1555 1555 1.34 LINK C CYS A 468 N MSE A 469 1555 1555 1.32 LINK C MSE A 469 N ALA A 470 1555 1555 1.31 LINK NE2 HIS A 479 ZN ZN A 601 1555 1555 1.98 LINK SG CYS A 483 ZN ZN A 601 1555 1555 2.38 LINK SG CYS A 488 ZN ZN A 601 1555 1555 2.37 LINK C VAL B 275 N MSE B 276 1555 1555 1.33 LINK C MSE B 276 N HIS B 277 1555 1555 1.33 LINK C ALA B 338 N MSE B 339 1555 1555 1.33 LINK C MSE B 339 N ARG B 340 1555 1555 1.34 LINK C LYS B 364 N MSE B 365 1555 1555 1.34 LINK C MSE B 365 N CYS B 366 1555 1555 1.34 LINK SG CYS B 400 ZN ZN B 601 1555 1555 1.91 LINK C LYS B 459 N MSE B 460 1555 1555 1.33 LINK C MSE B 460 N HIS B 461 1555 1555 1.33 LINK C CYS B 468 N MSE B 469 1555 1555 1.31 LINK C MSE B 469 N ALA B 470 1555 1555 1.33 LINK NE2 HIS B 479 ZN ZN B 601 1555 1555 1.97 LINK SG CYS B 483 ZN ZN B 601 1555 1555 2.55 LINK SG CYS B 488 ZN ZN B 601 1555 1555 2.43 LINK C VAL C 275 N MSE C 276 1555 1555 1.34 LINK C MSE C 276 N HIS C 277 1555 1555 1.34 LINK C ALA C 338 N MSE C 339 1555 1555 1.34 LINK C MSE C 339 N ARG C 340 1555 1555 1.32 LINK C LYS C 364 N MSE C 365 1555 1555 1.33 LINK C MSE C 365 N CYS C 366 1555 1555 1.35 LINK SG CYS C 400 ZN ZN C 601 1555 1555 2.17 LINK C LYS C 459 N MSE C 460 1555 1555 1.34 LINK C MSE C 460 N HIS C 461 1555 1555 1.35 LINK C CYS C 468 N MSE C 469 1555 1555 1.32 LINK C MSE C 469 N ALA C 470 1555 1555 1.35 LINK NE2 HIS C 479 ZN ZN C 601 1555 1555 2.00 LINK SG CYS C 483 ZN ZN C 601 1555 1555 2.39 LINK SG CYS C 488 ZN ZN C 601 1555 1555 2.34 SITE 1 AC1 4 CYS A 400 HIS A 479 CYS A 483 CYS A 488 SITE 1 AC2 4 CYS B 400 HIS B 479 CYS B 483 CYS B 488 SITE 1 AC3 4 CYS C 400 HIS C 479 CYS C 483 CYS C 488 CRYST1 156.983 120.335 79.037 90.00 100.46 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006370 0.000000 0.001176 0.00000 SCALE2 0.000000 0.008310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012866 0.00000