HEADER DNA BINDING PROTEIN 29-MAY-15 5BQT TITLE STRUCTURE OF TRMBL2, AN ARCHAEAL CHROMATIN PROTEIN, SHOWS A NOVEL MODE TITLE 2 OF DNA BINDING. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HTH-TYPE TRANSCRIPTIONAL REGULATOR TRMBL2; COMPND 3 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261 KEYWDS CHROMATIN BINDING PROTEIN, ARCHAEA, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.U.AHMAD,K.DIEDERICHS,W.WELTE REVDAT 4 10-JAN-24 5BQT 1 LINK REVDAT 3 20-FEB-19 5BQT 1 REMARK LINK REVDAT 2 07-OCT-15 5BQT 1 JRNL REVDAT 1 02-SEP-15 5BQT 0 JRNL AUTH M.U.AHMAD,I.WAEGE,W.HAUSNER,M.THOMM,W.BOOS,K.DIEDERICHS, JRNL AUTH 2 W.WELTE JRNL TITL STRUCTURAL INSIGHTS INTO NONSPECIFIC BINDING OF DNA BY JRNL TITL 2 TRMBL2, AN ARCHAEAL CHROMATIN PROTEIN. JRNL REF J.MOL.BIOL. V. 427 3216 2015 JRNL REFN ESSN 1089-8638 JRNL PMID 26299937 JRNL DOI 10.1016/J.JMB.2015.08.012 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.610 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 146.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND ( RESSEQ 2:225 OR RESSEQ REMARK 3 236:263 ) REMARK 3 SELECTION : CHAIN B AND ( RESSEQ 2:225 OR RESSEQ REMARK 3 236:263 ) REMARK 3 ATOM PAIRS NUMBER : 3048 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND (RESSEQ 2:263) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 2:263) REMARK 3 ATOM PAIRS NUMBER : 3208 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25362 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5BPD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE AND 21% PEG 3350, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.14900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 117.57150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.14900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 117.57150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 263 REMARK 465 GLU B 226 REMARK 465 ASP B 227 REMARK 465 LEU B 228 REMARK 465 ALA B 229 REMARK 465 ALA B 230 REMARK 465 ARG B 231 REMARK 465 TYR B 232 REMARK 465 PHE B 233 REMARK 465 ASN B 234 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 TYR D 50 HB2 ARG D 54 0.21 REMARK 500 CA TYR D 50 HD2 ARG D 54 0.58 REMARK 500 CA ASP D 51 HB2 ARG D 54 0.83 REMARK 500 HB2 TYR D 50 CA ASP D 51 0.85 REMARK 500 HB2 TYR D 50 C ASP D 51 0.98 REMARK 500 C ASP D 51 HB2 ARG D 54 1.12 REMARK 500 C TYR D 50 HD2 ARG D 54 1.14 REMARK 500 HH11 ARG A 130 HH TYR A 235 1.25 REMARK 500 HG2 ARG D 54 CD1 TYR D 72 1.27 REMARK 500 HG2 ARG D 54 CG TYR D 72 1.30 REMARK 500 N TYR D 50 HD2 ARG D 54 1.36 REMARK 500 N ASP D 51 HB2 ARG D 54 1.37 REMARK 500 HG2 ARG D 54 CE1 TYR D 72 1.38 REMARK 500 HG2 ARG D 54 CD2 TYR D 72 1.38 REMARK 500 HG SER C 135 O PHE C 157 1.46 REMARK 500 HG2 ARG D 54 CZ TYR D 72 1.49 REMARK 500 HG2 ARG D 54 CE2 TYR D 72 1.49 REMARK 500 HB2 TYR D 50 N ASP D 51 1.54 REMARK 500 OD1 ASP B 154 H GLY B 156 1.58 REMARK 500 OG SER C 135 O PHE C 157 2.15 REMARK 500 OG SER D 135 O PHE D 157 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG3 GLU C 199 HH TYR D 50 1554 0.87 REMARK 500 HE3 LYS C 198 HH21 ARG D 54 1554 1.17 REMARK 500 OD1 ASP C 195 HH11 ARG D 54 1554 1.25 REMARK 500 HG2 GLU C 199 HE1 TYR D 50 1554 1.27 REMARK 500 OD1 ASP C 195 HH12 ARG D 54 1554 1.31 REMARK 500 CG GLU C 199 HH TYR D 50 1554 1.44 REMARK 500 OD1 ASP C 195 NH1 ARG D 54 1554 1.44 REMARK 500 HE3 LYS C 198 NH2 ARG D 54 1554 1.47 REMARK 500 HG3 GLU C 199 OH TYR D 50 1554 1.54 REMARK 500 OE2 GLU C 199 CE1 TYR D 50 1554 1.92 REMARK 500 OE2 GLU C 199 CZ TYR D 50 1554 1.94 REMARK 500 CG GLU C 199 OH TYR D 50 1554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS C 68 CD - CE - NZ ANGL. DEV. = -19.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 43 57.88 -95.45 REMARK 500 THR A 116 81.66 -67.43 REMARK 500 LYS A 120 60.34 -100.09 REMARK 500 ASN A 148 -65.43 -107.41 REMARK 500 ILE A 158 -56.27 -132.78 REMARK 500 ASN A 161 68.39 -107.02 REMARK 500 LYS A 175 95.31 -63.47 REMARK 500 LYS A 209 132.72 -174.13 REMARK 500 ASP A 218 76.07 63.46 REMARK 500 ASP A 227 89.47 178.58 REMARK 500 LEU A 228 12.46 -144.04 REMARK 500 LYS A 260 55.99 -142.19 REMARK 500 GLU B 43 59.28 -93.58 REMARK 500 THR B 116 80.31 -66.50 REMARK 500 PRO B 119 61.51 -68.67 REMARK 500 ILE B 158 -61.34 -134.94 REMARK 500 ASN B 161 73.35 -110.61 REMARK 500 LYS B 175 94.12 -64.25 REMARK 500 ASP B 218 75.18 62.99 REMARK 500 LYS B 260 -154.90 -146.56 REMARK 500 ALA B 261 160.00 171.12 REMARK 500 LYS C 120 -5.04 83.17 REMARK 500 ASN C 148 -63.47 -120.44 REMARK 500 ILE C 158 -63.02 -96.41 REMARK 500 ALA C 159 -18.60 -143.83 REMARK 500 ASN C 161 -9.26 102.21 REMARK 500 LEU C 162 43.40 -109.86 REMARK 500 SER C 191 -156.12 -154.67 REMARK 500 ASP C 218 95.81 58.70 REMARK 500 GLU C 219 29.73 41.03 REMARK 500 TYR C 235 50.70 -143.79 REMARK 500 ASP C 243 102.47 -168.26 REMARK 500 ILE D 158 -62.35 -92.35 REMARK 500 ALA D 159 -11.93 -151.39 REMARK 500 LYS D 189 32.39 -90.77 REMARK 500 LEU D 212 85.52 -150.79 REMARK 500 ASP D 218 -114.11 64.96 REMARK 500 ASP D 227 106.64 -160.55 REMARK 500 ALA D 229 36.17 -96.50 REMARK 500 TYR D 235 51.62 -142.66 REMARK 500 ASP D 243 103.92 -169.41 REMARK 500 LYS D 260 -45.06 65.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA D 190 SER D 191 -33.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 79 OD1 REMARK 620 2 LEU D 137 O 120.6 REMARK 620 3 GLU D 141 OE2 119.1 117.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 144 OE1 REMARK 620 2 GLU D 144 OE2 46.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG D 54 and ASP C REMARK 800 195 DBREF 5BQT A 2 263 UNP Q8U3H1 TMBL2_PYRFU 2 263 DBREF 5BQT B 2 263 UNP Q8U3H1 TMBL2_PYRFU 2 263 DBREF 5BQT C 2 263 UNP Q8U3H1 TMBL2_PYRFU 2 263 DBREF 5BQT D 2 263 UNP Q8U3H1 TMBL2_PYRFU 2 263 SEQRES 1 A 262 SER LYS ASP ARG MET VAL GLU LEU LEU GLN GLU HIS PHE SEQRES 2 A 262 GLU LEU ASN LEU TYR GLU ALA ARG ALA TYR VAL ALA LEU SEQRES 3 A 262 VAL ALA PHE GLY VAL LEU THR PRO ALA GLU LEU ALA SER SEQRES 4 A 262 VAL SER GLU VAL PRO ALA PRO ARG THR TYR ASP VAL LEU SEQRES 5 A 262 ARG SER LEU GLU LYS LYS GLY PHE ALA MET THR GLN PRO SEQRES 6 A 262 GLY LYS THR ASN LYS TYR ARG PRO VAL HIS PRO ALA ASN SEQRES 7 A 262 VAL LEU GLU LYS PHE ILE GLN ASP TRP GLN GLU ARG VAL SEQRES 8 A 262 LYS GLU GLU LEU GLU ALA LYS LYS LYS ALA LYS GLU GLU SEQRES 9 A 262 LEU LEU GLU LEU MET ALA PRO LEU ILE GLU THR GLU VAL SEQRES 10 A 262 PRO LYS TYR GLY VAL GLU ARG VAL TRP VAL VAL ARG GLY SEQRES 11 A 262 ILE LYS ASN SER THR LEU LYS THR LYS GLU MET LEU GLU SEQRES 12 A 262 GLU ALA GLN ASN GLU ILE LEU LEU ALA ASP ASP GLY PHE SEQRES 13 A 262 ILE ALA VAL ASN LEU GLU ASP ASP ILE ILE LYS ALA VAL SEQRES 14 A 262 ASP ARG GLY VAL LYS THR LYS ILE LEU LEU THR LYS ASN SEQRES 15 A 262 LEU LEU PRO ARG LEU LYS ALA SER LYS ILE ILE ASP TYR SEQRES 16 A 262 ALA LYS GLU GLY LYS LEU GLU LEU ARG ALA LEU ASP LYS SEQRES 17 A 262 PHE ASP LEU PRO MET LEU ILE CYS ASP GLU GLU VAL PHE SEQRES 18 A 262 PHE ALA LEU GLU ASP LEU ALA ALA ARG TYR PHE ASN TYR SEQRES 19 A 262 GLU THR GLN VAL TRP ILE LYS ASP HIS ARG VAL VAL ALA SEQRES 20 A 262 LEU PHE LYS GLU LYS PHE ASN GLU TYR TRP GLU LYS ALA SEQRES 21 A 262 GLU LYS SEQRES 1 B 262 SER LYS ASP ARG MET VAL GLU LEU LEU GLN GLU HIS PHE SEQRES 2 B 262 GLU LEU ASN LEU TYR GLU ALA ARG ALA TYR VAL ALA LEU SEQRES 3 B 262 VAL ALA PHE GLY VAL LEU THR PRO ALA GLU LEU ALA SER SEQRES 4 B 262 VAL SER GLU VAL PRO ALA PRO ARG THR TYR ASP VAL LEU SEQRES 5 B 262 ARG SER LEU GLU LYS LYS GLY PHE ALA MET THR GLN PRO SEQRES 6 B 262 GLY LYS THR ASN LYS TYR ARG PRO VAL HIS PRO ALA ASN SEQRES 7 B 262 VAL LEU GLU LYS PHE ILE GLN ASP TRP GLN GLU ARG VAL SEQRES 8 B 262 LYS GLU GLU LEU GLU ALA LYS LYS LYS ALA LYS GLU GLU SEQRES 9 B 262 LEU LEU GLU LEU MET ALA PRO LEU ILE GLU THR GLU VAL SEQRES 10 B 262 PRO LYS TYR GLY VAL GLU ARG VAL TRP VAL VAL ARG GLY SEQRES 11 B 262 ILE LYS ASN SER THR LEU LYS THR LYS GLU MET LEU GLU SEQRES 12 B 262 GLU ALA GLN ASN GLU ILE LEU LEU ALA ASP ASP GLY PHE SEQRES 13 B 262 ILE ALA VAL ASN LEU GLU ASP ASP ILE ILE LYS ALA VAL SEQRES 14 B 262 ASP ARG GLY VAL LYS THR LYS ILE LEU LEU THR LYS ASN SEQRES 15 B 262 LEU LEU PRO ARG LEU LYS ALA SER LYS ILE ILE ASP TYR SEQRES 16 B 262 ALA LYS GLU GLY LYS LEU GLU LEU ARG ALA LEU ASP LYS SEQRES 17 B 262 PHE ASP LEU PRO MET LEU ILE CYS ASP GLU GLU VAL PHE SEQRES 18 B 262 PHE ALA LEU GLU ASP LEU ALA ALA ARG TYR PHE ASN TYR SEQRES 19 B 262 GLU THR GLN VAL TRP ILE LYS ASP HIS ARG VAL VAL ALA SEQRES 20 B 262 LEU PHE LYS GLU LYS PHE ASN GLU TYR TRP GLU LYS ALA SEQRES 21 B 262 GLU LYS SEQRES 1 C 262 SER LYS ASP ARG MET VAL GLU LEU LEU GLN GLU HIS PHE SEQRES 2 C 262 GLU LEU ASN LEU TYR GLU ALA ARG ALA TYR VAL ALA LEU SEQRES 3 C 262 VAL ALA PHE GLY VAL LEU THR PRO ALA GLU LEU ALA SER SEQRES 4 C 262 VAL SER GLU VAL PRO ALA PRO ARG THR TYR ASP VAL LEU SEQRES 5 C 262 ARG SER LEU GLU LYS LYS GLY PHE ALA MET THR GLN PRO SEQRES 6 C 262 GLY LYS THR ASN LYS TYR ARG PRO VAL HIS PRO ALA ASN SEQRES 7 C 262 VAL LEU GLU LYS PHE ILE GLN ASP TRP GLN GLU ARG VAL SEQRES 8 C 262 LYS GLU GLU LEU GLU ALA LYS LYS LYS ALA LYS GLU GLU SEQRES 9 C 262 LEU LEU GLU LEU MET ALA PRO LEU ILE GLU THR GLU VAL SEQRES 10 C 262 PRO LYS TYR GLY VAL GLU ARG VAL TRP VAL VAL ARG GLY SEQRES 11 C 262 ILE LYS ASN SER THR LEU LYS THR LYS GLU MET LEU GLU SEQRES 12 C 262 GLU ALA GLN ASN GLU ILE LEU LEU ALA ASP ASP GLY PHE SEQRES 13 C 262 ILE ALA VAL ASN LEU GLU ASP ASP ILE ILE LYS ALA VAL SEQRES 14 C 262 ASP ARG GLY VAL LYS THR LYS ILE LEU LEU THR LYS ASN SEQRES 15 C 262 LEU LEU PRO ARG LEU LYS ALA SER LYS ILE ILE ASP TYR SEQRES 16 C 262 ALA LYS GLU GLY LYS LEU GLU LEU ARG ALA LEU ASP LYS SEQRES 17 C 262 PHE ASP LEU PRO MET LEU ILE CYS ASP GLU GLU VAL PHE SEQRES 18 C 262 PHE ALA LEU GLU ASP LEU ALA ALA ARG TYR PHE ASN TYR SEQRES 19 C 262 GLU THR GLN VAL TRP ILE LYS ASP HIS ARG VAL VAL ALA SEQRES 20 C 262 LEU PHE LYS GLU LYS PHE ASN GLU TYR TRP GLU LYS ALA SEQRES 21 C 262 GLU LYS SEQRES 1 D 262 SER LYS ASP ARG MET VAL GLU LEU LEU GLN GLU HIS PHE SEQRES 2 D 262 GLU LEU ASN LEU TYR GLU ALA ARG ALA TYR VAL ALA LEU SEQRES 3 D 262 VAL ALA PHE GLY VAL LEU THR PRO ALA GLU LEU ALA SER SEQRES 4 D 262 VAL SER GLU VAL PRO ALA PRO ARG THR TYR ASP VAL LEU SEQRES 5 D 262 ARG SER LEU GLU LYS LYS GLY PHE ALA MET THR GLN PRO SEQRES 6 D 262 GLY LYS THR ASN LYS TYR ARG PRO VAL HIS PRO ALA ASN SEQRES 7 D 262 VAL LEU GLU LYS PHE ILE GLN ASP TRP GLN GLU ARG VAL SEQRES 8 D 262 LYS GLU GLU LEU GLU ALA LYS LYS LYS ALA LYS GLU GLU SEQRES 9 D 262 LEU LEU GLU LEU MET ALA PRO LEU ILE GLU THR GLU VAL SEQRES 10 D 262 PRO LYS TYR GLY VAL GLU ARG VAL TRP VAL VAL ARG GLY SEQRES 11 D 262 ILE LYS ASN SER THR LEU LYS THR LYS GLU MET LEU GLU SEQRES 12 D 262 GLU ALA GLN ASN GLU ILE LEU LEU ALA ASP ASP GLY PHE SEQRES 13 D 262 ILE ALA VAL ASN LEU GLU ASP ASP ILE ILE LYS ALA VAL SEQRES 14 D 262 ASP ARG GLY VAL LYS THR LYS ILE LEU LEU THR LYS ASN SEQRES 15 D 262 LEU LEU PRO ARG LEU LYS ALA SER LYS ILE ILE ASP TYR SEQRES 16 D 262 ALA LYS GLU GLY LYS LEU GLU LEU ARG ALA LEU ASP LYS SEQRES 17 D 262 PHE ASP LEU PRO MET LEU ILE CYS ASP GLU GLU VAL PHE SEQRES 18 D 262 PHE ALA LEU GLU ASP LEU ALA ALA ARG TYR PHE ASN TYR SEQRES 19 D 262 GLU THR GLN VAL TRP ILE LYS ASP HIS ARG VAL VAL ALA SEQRES 20 D 262 LEU PHE LYS GLU LYS PHE ASN GLU TYR TRP GLU LYS ALA SEQRES 21 D 262 GLU LYS HET CA B 301 1 HET CA D 301 1 HETNAM CA CALCIUM ION FORMUL 5 CA 2(CA 2+) HELIX 1 AA1 SER A 2 PHE A 14 1 13 HELIX 2 AA2 ASN A 17 GLY A 31 1 15 HELIX 3 AA3 THR A 34 SER A 42 1 9 HELIX 4 AA4 PRO A 45 LYS A 59 1 15 HELIX 5 AA5 HIS A 76 GLU A 115 1 40 HELIX 6 AA6 GLY A 131 ALA A 146 1 16 HELIX 7 AA7 ILE A 158 ARG A 172 1 15 HELIX 8 AA8 ASN A 183 LYS A 189 5 7 HELIX 9 AA9 LYS A 192 GLU A 199 1 8 HELIX 10 AB1 ASP A 243 GLU A 259 1 17 HELIX 11 AB2 LYS B 3 PHE B 14 1 12 HELIX 12 AB3 ASN B 17 GLY B 31 1 15 HELIX 13 AB4 THR B 34 SER B 42 1 9 HELIX 14 AB5 PRO B 45 PRO B 47 5 3 HELIX 15 AB6 ARG B 48 LYS B 59 1 12 HELIX 16 AB7 HIS B 76 MET B 110 1 35 HELIX 17 AB8 MET B 110 THR B 116 1 7 HELIX 18 AB9 GLY B 131 ALA B 146 1 16 HELIX 19 AC1 ILE B 158 ARG B 172 1 15 HELIX 20 AC2 LYS B 182 LYS B 189 5 8 HELIX 21 AC3 LYS B 192 GLU B 199 1 8 HELIX 22 AC4 ASP B 243 TRP B 258 1 16 HELIX 23 AC5 LYS C 3 PHE C 14 1 12 HELIX 24 AC6 ASN C 17 GLY C 31 1 15 HELIX 25 AC7 THR C 34 SER C 42 1 9 HELIX 26 AC8 PRO C 45 PRO C 47 5 3 HELIX 27 AC9 ARG C 48 LYS C 59 1 12 HELIX 28 AD1 HIS C 76 ASN C 79 5 4 HELIX 29 AD2 VAL C 80 GLU C 115 1 36 HELIX 30 AD3 ILE C 132 LEU C 137 5 6 HELIX 31 AD4 LYS C 138 ALA C 146 1 9 HELIX 32 AD5 LEU C 162 ARG C 172 1 11 HELIX 33 AD6 ASN C 183 LEU C 188 1 6 HELIX 34 AD7 SER C 191 GLU C 199 1 9 HELIX 35 AD8 ALA C 230 ASN C 234 5 5 HELIX 36 AD9 ASP C 243 ALA C 261 1 19 HELIX 37 AE1 LYS D 3 PHE D 14 1 12 HELIX 38 AE2 ASN D 17 GLY D 31 1 15 HELIX 39 AE3 THR D 34 SER D 42 1 9 HELIX 40 AE4 PRO D 45 PRO D 47 5 3 HELIX 41 AE5 ARG D 48 LYS D 59 1 12 HELIX 42 AE6 HIS D 76 MET D 110 1 35 HELIX 43 AE7 MET D 110 GLU D 115 1 6 HELIX 44 AE8 ILE D 132 ASN D 134 5 3 HELIX 45 AE9 SER D 135 ALA D 146 1 12 HELIX 46 AF1 LEU D 162 ASP D 171 1 10 HELIX 47 AF2 ASN D 183 LEU D 185 5 3 HELIX 48 AF3 LYS D 192 ALA D 197 1 6 HELIX 49 AF4 ALA D 230 ASN D 234 5 5 HELIX 50 AF5 ASP D 243 GLU D 259 1 17 SHEET 1 AA1 2 ALA A 62 GLN A 65 0 SHEET 2 AA1 2 LYS A 71 PRO A 74 -1 O ARG A 73 N MET A 63 SHEET 1 AA2 7 VAL A 126 ARG A 130 0 SHEET 2 AA2 7 THR A 237 ILE A 241 -1 O GLN A 238 N VAL A 129 SHEET 3 AA2 7 VAL A 221 ALA A 224 -1 N PHE A 223 O VAL A 239 SHEET 4 AA2 7 MET A 214 CYS A 217 -1 N LEU A 215 O PHE A 222 SHEET 5 AA2 7 GLU A 149 ASP A 154 -1 N LEU A 151 O ILE A 216 SHEET 6 AA2 7 LYS A 175 THR A 181 1 O LEU A 179 N ASP A 154 SHEET 7 AA2 7 LEU A 202 LEU A 207 1 O GLU A 203 N ILE A 178 SHEET 1 AA3 2 ALA B 62 GLN B 65 0 SHEET 2 AA3 2 LYS B 71 PRO B 74 -1 O ARG B 73 N MET B 63 SHEET 1 AA4 7 VAL B 126 ARG B 130 0 SHEET 2 AA4 7 THR B 237 ILE B 241 -1 O GLN B 238 N VAL B 129 SHEET 3 AA4 7 VAL B 221 ALA B 224 -1 N PHE B 223 O VAL B 239 SHEET 4 AA4 7 MET B 214 CYS B 217 -1 N LEU B 215 O PHE B 222 SHEET 5 AA4 7 GLU B 149 ASP B 154 -1 N LEU B 151 O ILE B 216 SHEET 6 AA4 7 LYS B 175 LEU B 180 1 O LEU B 179 N ASP B 154 SHEET 7 AA4 7 GLU B 203 ALA B 206 1 O GLU B 203 N ILE B 178 SHEET 1 AA5 2 ALA C 62 THR C 64 0 SHEET 2 AA5 2 TYR C 72 PRO C 74 -1 O ARG C 73 N MET C 63 SHEET 1 AA6 7 VAL C 126 ARG C 130 0 SHEET 2 AA6 7 THR C 237 ILE C 241 -1 O TRP C 240 N TRP C 127 SHEET 3 AA6 7 VAL C 221 ALA C 224 -1 N PHE C 223 O VAL C 239 SHEET 4 AA6 7 MET C 214 CYS C 217 -1 N LEU C 215 O PHE C 222 SHEET 5 AA6 7 GLU C 149 ASP C 154 -1 N LEU C 151 O ILE C 216 SHEET 6 AA6 7 LYS C 175 THR C 181 1 O LYS C 175 N ILE C 150 SHEET 7 AA6 7 GLU C 203 LEU C 207 1 O GLU C 203 N ILE C 178 SHEET 1 AA7 2 ALA D 62 THR D 64 0 SHEET 2 AA7 2 TYR D 72 PRO D 74 -1 O ARG D 73 N MET D 63 SHEET 1 AA8 7 VAL D 126 ARG D 130 0 SHEET 2 AA8 7 THR D 237 ILE D 241 -1 O TRP D 240 N TRP D 127 SHEET 3 AA8 7 GLU D 220 ALA D 224 -1 N PHE D 223 O VAL D 239 SHEET 4 AA8 7 MET D 214 CYS D 217 -1 N LEU D 215 O PHE D 222 SHEET 5 AA8 7 GLU D 149 ASP D 154 -1 N LEU D 151 O ILE D 216 SHEET 6 AA8 7 LYS D 175 THR D 181 1 O LEU D 179 N LEU D 152 SHEET 7 AA8 7 GLU D 203 LEU D 207 1 O GLU D 203 N ILE D 178 LINK OD1 ASN B 79 CA CA B 301 1555 1555 2.38 LINK CA CA B 301 O LEU D 137 1555 1555 2.47 LINK CA CA B 301 OE2 GLU D 141 1555 1555 2.47 LINK OE1 GLU D 144 CA CA D 301 1555 1555 2.69 LINK OE2 GLU D 144 CA CA D 301 1555 1555 2.90 CISPEP 1 GLY A 156 PHE A 157 0 21.91 CISPEP 2 VAL A 160 ASN A 161 0 -18.41 CISPEP 3 GLU A 199 GLY A 200 0 -27.49 CISPEP 4 ASP A 227 LEU A 228 0 -10.71 CISPEP 5 PHE A 233 ASN A 234 0 13.32 CISPEP 6 ALA A 261 GLU A 262 0 -17.81 CISPEP 7 GLY B 156 PHE B 157 0 21.56 CISPEP 8 VAL B 160 ASN B 161 0 -22.76 CISPEP 9 GLU B 199 GLY B 200 0 -23.14 CISPEP 10 GLU B 259 LYS B 260 0 -20.63 CISPEP 11 GLU B 262 LYS B 263 0 -15.21 CISPEP 12 GLY C 67 LYS C 68 0 3.37 CISPEP 13 GLU C 117 VAL C 118 0 22.72 CISPEP 14 VAL C 118 PRO C 119 0 -8.13 CISPEP 15 LYS C 189 ALA C 190 0 12.77 CISPEP 16 ALA C 190 SER C 191 0 21.55 CISPEP 17 VAL D 118 PRO D 119 0 -8.48 CISPEP 18 ILE D 194 ASP D 195 0 23.42 CISPEP 19 LEU D 228 ALA D 229 0 7.06 SITE 1 AC1 3 ASN B 79 LEU D 137 GLU D 141 SITE 1 AC2 1 GLU D 144 SITE 1 AC3 32 TYR C 50 ASP C 51 VAL C 52 LEU C 53 SITE 2 AC3 32 SER C 55 LEU C 56 GLU C 57 LYS C 58 SITE 3 AC3 32 SER C 191 LYS C 192 ILE C 193 ILE C 194 SITE 4 AC3 32 TYR C 196 ALA C 197 LYS C 198 GLU C 199 SITE 5 AC3 32 TYR D 50 ASP D 51 VAL D 52 LEU D 53 SITE 6 AC3 32 SER D 55 LEU D 56 GLU D 57 LYS D 58 SITE 7 AC3 32 LYS D 101 GLU D 104 LYS D 192 ILE D 194 SITE 8 AC3 32 TYR D 196 ALA D 197 LYS D 198 GLU D 199 CRYST1 82.298 235.143 63.511 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012151 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015745 0.00000