HEADER ISOMERASE 29-MAY-15 5BR7 TITLE STRUCTURE OF UDP-GALACTOPYRANOSE MUTASE FROM CORYNEBACTERIUM TITLE 2 DIPHTHERIAE IN COMPLEX WITH CITRATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOPYRANOSE MUTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 18-404; COMPND 5 EC: 5.4.99.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE (STRAIN ATCC 700971 SOURCE 3 / NCTC 13129 / BIOTYPE GRAVIS); SOURCE 4 ORGANISM_TAXID: 257309; SOURCE 5 STRAIN: ATCC 700971 / NCTC 13129 / BIOTYPE GRAVIS; SOURCE 6 GENE: GLF, DIP2203; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL C5X KEYWDS UDP-GALACTOPYRANOSE MUTASE, CORYNEBACTERIUM DIPHTHERIAE, KEYWDS 2 GALACTOFURANOSE, GALACTOPYRANOSE, CITRATE, FAD, SODIUM ION, KEYWDS 3 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.WANGKANONT,L.L.KIESSLING,K.T.FOREST REVDAT 3 27-SEP-23 5BR7 1 REMARK REVDAT 2 09-AUG-17 5BR7 1 JRNL REMARK REVDAT 1 01-JUN-16 5BR7 0 JRNL AUTH K.WANGKANONT,V.J.WINTON,K.T.FOREST,L.L.KIESSLING JRNL TITL CONFORMATIONAL CONTROL OF UDP-GALACTOPYRANOSE MUTASE JRNL TITL 2 INHIBITION. JRNL REF BIOCHEMISTRY V. 56 3983 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28608671 JRNL DOI 10.1021/ACS.BIOCHEM.7B00189 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 44055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7335 - 4.2001 1.00 4619 244 0.1289 0.1531 REMARK 3 2 4.2001 - 3.3341 1.00 4394 231 0.1372 0.1646 REMARK 3 3 3.3341 - 2.9127 1.00 4333 228 0.1627 0.2201 REMARK 3 4 2.9127 - 2.6464 0.99 4304 225 0.1701 0.2056 REMARK 3 5 2.6464 - 2.4567 0.98 4240 219 0.1657 0.2189 REMARK 3 6 2.4567 - 2.3119 0.97 4190 222 0.1654 0.2131 REMARK 3 7 2.3119 - 2.1961 0.96 4129 213 0.1703 0.2088 REMARK 3 8 2.1961 - 2.1005 0.95 4038 214 0.1759 0.2144 REMARK 3 9 2.1005 - 2.0197 0.93 4003 202 0.1817 0.2295 REMARK 3 10 2.0197 - 1.9500 0.85 3616 191 0.1982 0.2267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3508 REMARK 3 ANGLE : 1.047 4761 REMARK 3 CHIRALITY : 0.044 474 REMARK 3 PLANARITY : 0.004 631 REMARK 3 DIHEDRAL : 14.630 1290 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210404. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-14; 21-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.6; 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; SSRL REMARK 200 BEAMLINE : 21-ID-F; BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872; 1.181 REMARK 200 MONOCHROMATOR : DIAMOND(111); SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45492 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 23.60 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 20.10 REMARK 200 R MERGE FOR SHELL (I) : 0.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: PDB ENTRY 2BI7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, 15% REMARK 280 ISOPROPANOL, 16-18% PEG5000 MME, PH 5.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K. 100 MM SODIUM CITRATE, 15% REMARK 280 ISOPROPANOL, 16-18% PEG5000 MME. SOAKED IN 100 MM POTASSIUM REMARK 280 CITRATE, PH 5.6, 15% ISOPROPANOL, 18% PEG5000 MME PRIOR TO REMARK 280 CRYOPROTECTION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.11150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.13900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.13900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.55575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.13900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.13900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.66725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.13900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.13900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.55575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.13900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.13900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 94.66725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.11150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 126.22300 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 505 O HOH A 927 2.10 REMARK 500 O HOH A 533 O HOH A 867 2.15 REMARK 500 O HOH A 895 O HOH A 916 2.15 REMARK 500 OD2 ASP A 156 O HOH A 501 2.16 REMARK 500 O HOH A 789 O HOH A 831 2.17 REMARK 500 OD1 ASP A 301 O HOH A 502 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 178 41.41 -86.22 REMARK 500 TYR A 181 40.02 -102.16 REMARK 500 ASN A 232 82.17 -158.96 REMARK 500 PHE A 247 32.61 -98.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 958 DISTANCE = 6.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 60 O REMARK 620 2 FAD A 401 O4 90.0 REMARK 620 3 FLC A 411 OA1 91.8 139.1 REMARK 620 4 FLC A 411 OB1 149.3 115.4 80.2 REMARK 620 5 FLC A 411 OHB 138.6 77.4 74.5 67.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 126 O REMARK 620 2 ILE A 129 O 91.6 REMARK 620 3 SER A 143 O 94.3 98.1 REMARK 620 4 HOH A 588 O 89.2 85.1 175.1 REMARK 620 5 HOH A 649 O 88.7 173.2 88.7 88.1 REMARK 620 6 HOH A 808 O 168.0 100.4 85.3 90.6 79.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 411 DBREF 5BR7 A 1 387 UNP Q6NER4 Q6NER4_CORDI 18 404 SEQADV 5BR7 HIS A 388 UNP Q6NER4 EXPRESSION TAG SEQADV 5BR7 HIS A 389 UNP Q6NER4 EXPRESSION TAG SEQADV 5BR7 HIS A 390 UNP Q6NER4 EXPRESSION TAG SEQADV 5BR7 HIS A 391 UNP Q6NER4 EXPRESSION TAG SEQADV 5BR7 HIS A 392 UNP Q6NER4 EXPRESSION TAG SEQADV 5BR7 HIS A 393 UNP Q6NER4 EXPRESSION TAG SEQRES 1 A 393 MET SER ASP PHE ASP LEU ILE VAL VAL GLY SER GLY LEU SEQRES 2 A 393 PHE GLY LEU THR VAL ALA GLU ARG ALA ALA SER GLN LEU SEQRES 3 A 393 GLY LYS LYS VAL LEU ILE VAL GLU LYS ARG SER HIS LEU SEQRES 4 A 393 GLY GLY ASN ALA TYR SER GLU ALA GLU PRO GLU THR GLY SEQRES 5 A 393 ILE GLU ILE HIS LYS TYR GLY ALA HIS LEU PHE HIS THR SEQRES 6 A 393 SER ASN LYS ARG VAL TRP ASP TYR VAL ASN GLN PHE THR SEQRES 7 A 393 ALA PHE THR GLY TYR GLN HIS ARG VAL PHE ALA MET HIS SEQRES 8 A 393 ASN GLY THR ALA TYR GLN PHE PRO MET GLY LEU GLY LEU SEQRES 9 A 393 ILE ASN GLN PHE PHE GLY ARG TYR TYR THR PRO ASP GLU SEQRES 10 A 393 ALA ARG GLU LEU ILE LYS GLU GLN SER ALA GLU ILE ASP SEQRES 11 A 393 SER LYS ASP ALA THR ASN LEU GLU GLU LYS ALA ILE SER SEQRES 12 A 393 LEU ILE GLY ARG PRO LEU TYR GLU ALA PHE ILE ARG ASP SEQRES 13 A 393 TYR THR ALA LYS GLN TRP GLN THR ASP PRO LYS GLU LEU SEQRES 14 A 393 PRO ALA GLY ASN ILE THR ARG LEU PRO VAL ARG TYR ASN SEQRES 15 A 393 PHE ASP ASN ARG TYR PHE ASN ASP THR TYR GLU GLY LEU SEQRES 16 A 393 PRO VAL ASP GLY TYR ALA GLN TRP LEU SER ASN MET ALA SEQRES 17 A 393 ASP HIS GLU ASN ILE GLU VAL ARG LEU ASP THR ASP TRP SEQRES 18 A 393 PHE GLU VAL ARG GLU ASP LEU ARG ALA GLN ASN PRO GLU SEQRES 19 A 393 ALA PRO VAL VAL TYR THR GLY PRO LEU ASP ARG TYR PHE SEQRES 20 A 393 ASP TYR SER GLU GLY HIS LEU GLY TRP ARG THR LEU ASP SEQRES 21 A 393 PHE GLU THR GLU VAL LEU ASN THR GLY ASP PHE GLN GLY SEQRES 22 A 393 THR PRO VAL MET ASN TYR ASN ASP ALA GLU PHE PRO TYR SEQRES 23 A 393 THR ARG ILE HIS GLU PHE ARG HIS PHE HIS PRO GLU ARG SEQRES 24 A 393 GLU ASP ARG HIS PRO LYS ASP LYS THR VAL ILE MET LYS SEQRES 25 A 393 GLU TYR SER ARG PHE ALA GLU GLU GLY ASP GLU PRO TYR SEQRES 26 A 393 TYR PRO ILE ASN THR PRO SER ASP ARG GLU MET LEU PHE SEQRES 27 A 393 LYS TYR ARG GLU LEU ALA ASP ALA GLU THR GLU SER GLY SEQRES 28 A 393 LYS VAL TYR PHE GLY GLY ARG LEU GLY THR TYR GLN TYR SEQRES 29 A 393 LEU ASP MET HIS MET ALA ILE ALA SER ALA LEU SER MET SEQRES 30 A 393 PHE ASP ASN LYS LEU VAL ASP ALA LEU LYS HIS HIS HIS SEQRES 31 A 393 HIS HIS HIS HET FAD A 401 53 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET NA A 406 1 HET NA A 407 1 HET IPA A 408 4 HET IPA A 409 4 HET IPA A 410 4 HET FLC A 411 13 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM IPA ISOPROPYL ALCOHOL HETNAM FLC CITRATE ANION HETSYN EDO ETHYLENE GLYCOL HETSYN IPA 2-PROPANOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 NA 2(NA 1+) FORMUL 9 IPA 3(C3 H8 O) FORMUL 12 FLC C6 H5 O7 3- FORMUL 13 HOH *458(H2 O) HELIX 1 AA1 GLY A 12 LEU A 26 1 15 HELIX 2 AA2 GLY A 40 TYR A 44 5 5 HELIX 3 AA3 ASN A 67 ASN A 75 1 9 HELIX 4 AA4 GLY A 101 GLY A 110 1 10 HELIX 5 AA5 THR A 114 SER A 126 1 13 HELIX 6 AA6 ASP A 130 ALA A 134 5 5 HELIX 7 AA7 ASN A 136 GLY A 146 1 11 HELIX 8 AA8 GLY A 146 ILE A 154 1 9 HELIX 9 AA9 ILE A 154 GLN A 163 1 10 HELIX 10 AB1 ASP A 165 LEU A 169 5 5 HELIX 11 AB2 PRO A 170 ILE A 174 5 5 HELIX 12 AB3 GLY A 199 ASP A 209 1 11 HELIX 13 AB4 ASP A 220 ASN A 232 1 13 HELIX 14 AB5 PRO A 242 PHE A 247 1 6 HELIX 15 AB6 ARG A 293 GLU A 300 5 8 HELIX 16 AB7 THR A 330 LYS A 352 1 23 HELIX 17 AB8 GLY A 356 TYR A 362 1 7 HELIX 18 AB9 ASP A 366 LYS A 381 1 16 HELIX 19 AC1 LYS A 381 LEU A 386 1 6 SHEET 1 AA1 5 ILE A 213 ARG A 216 0 SHEET 2 AA1 5 VAL A 30 VAL A 33 1 N ILE A 32 O GLU A 214 SHEET 3 AA1 5 LEU A 6 VAL A 9 1 N VAL A 8 O VAL A 33 SHEET 4 AA1 5 VAL A 237 TYR A 239 1 O VAL A 238 N VAL A 9 SHEET 5 AA1 5 VAL A 353 PHE A 355 1 O TYR A 354 N TYR A 239 SHEET 1 AA2 2 GLU A 46 ALA A 47 0 SHEET 2 AA2 2 GLU A 54 ILE A 55 -1 O ILE A 55 N GLU A 46 SHEET 1 AA3 2 PHE A 63 THR A 65 0 SHEET 2 AA3 2 TYR A 192 GLY A 194 -1 O TYR A 192 N THR A 65 SHEET 1 AA4 7 THR A 94 PHE A 98 0 SHEET 2 AA4 7 VAL A 87 HIS A 91 -1 N ALA A 89 O TYR A 96 SHEET 3 AA4 7 VAL A 276 TYR A 279 1 O ASN A 278 N MET A 90 SHEET 4 AA4 7 ARG A 288 GLU A 291 -1 O ILE A 289 N MET A 277 SHEET 5 AA4 7 THR A 308 PHE A 317 -1 O MET A 311 N HIS A 290 SHEET 6 AA4 7 TRP A 256 LEU A 266 -1 N ASP A 260 O TYR A 314 SHEET 7 AA4 7 TYR A 326 PRO A 327 -1 O TYR A 326 N ARG A 257 LINK O ALA A 60 NA NA A 407 1555 1555 2.42 LINK O SER A 126 NA NA A 406 1555 1555 2.37 LINK O ILE A 129 NA NA A 406 1555 1555 2.28 LINK O SER A 143 NA NA A 406 1555 1555 2.34 LINK O4 FAD A 401 NA NA A 407 1555 1555 2.30 LINK NA NA A 406 O HOH A 588 1555 1555 2.46 LINK NA NA A 406 O HOH A 649 1555 1555 2.35 LINK NA NA A 406 O HOH A 808 1555 1555 2.45 LINK NA NA A 407 OA1 FLC A 411 1555 1555 2.50 LINK NA NA A 407 OB1 FLC A 411 1555 1555 2.31 LINK NA NA A 407 OHB FLC A 411 1555 1555 2.49 CISPEP 1 PHE A 98 PRO A 99 0 -0.78 SITE 1 AC1 39 VAL A 9 GLY A 10 GLY A 12 LEU A 13 SITE 2 AC1 39 PHE A 14 VAL A 33 GLU A 34 LYS A 35 SITE 3 AC1 39 ARG A 36 GLY A 41 ASN A 42 TYR A 58 SITE 4 AC1 39 ALA A 60 HIS A 61 LEU A 62 THR A 219 SITE 5 AC1 39 ASP A 220 TRP A 221 PHE A 222 TYR A 325 SITE 6 AC1 39 TYR A 326 GLY A 357 ARG A 358 TYR A 364 SITE 7 AC1 39 LEU A 365 ASP A 366 MET A 367 ALA A 370 SITE 8 AC1 39 NA A 407 FLC A 411 HOH A 538 HOH A 576 SITE 9 AC1 39 HOH A 577 HOH A 633 HOH A 682 HOH A 710 SITE 10 AC1 39 HOH A 806 HOH A 807 HOH A 826 SITE 1 AC2 6 HIS A 56 ALA A 60 HIS A 61 TYR A 200 SITE 2 AC2 6 PHE A 295 HOH A 532 SITE 1 AC3 3 GLU A 264 PHE A 271 LYS A 312 SITE 1 AC4 3 ASP A 366 HIS A 368 HOH A 693 SITE 1 AC5 1 GLU A 262 SITE 1 AC6 6 SER A 126 ILE A 129 SER A 143 HOH A 588 SITE 2 AC6 6 HOH A 649 HOH A 808 SITE 1 AC7 3 ALA A 60 FAD A 401 FLC A 411 SITE 1 AC8 5 ASN A 182 ASP A 184 GLY A 273 HIS A 294 SITE 2 AC8 5 HOH A 615 SITE 1 AC9 2 GLY A 52 ASP A 198 SITE 1 AD1 13 ALA A 60 LEU A 62 ARG A 288 HIS A 290 SITE 2 AD1 13 FAD A 401 NA A 407 HOH A 522 HOH A 541 SITE 3 AD1 13 HOH A 553 HOH A 563 HOH A 596 HOH A 610 SITE 4 AD1 13 HOH A 768 CRYST1 98.278 98.278 126.223 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010175 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007922 0.00000