HEADER SOLUTE-BINDING PROTEIN 30-MAY-15 5BRA TITLE CRYSTAL STRUCTURE OF A PUTATIVE PERIPLASMIC SOLUTE BINDING PROTEIN TITLE 2 (IPR025997) FROM OCHROBACTRUM ANTHROPI ATCC49188 (OANT_2843, TARGET TITLE 3 EFI-511085) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PERIPLASMIC BINDING PROTEIN WITH SUBSTRATE RIBOSE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCHROBACTRUM ANTHROPI (STRAIN ATCC 49188 / DSM SOURCE 3 6882 / NCTC 12168); SOURCE 4 ORGANISM_TAXID: 439375; SOURCE 5 STRAIN: ATCC 49188 / DSM 6882 / NCTC 12168; SOURCE 6 GENE: OANT_2843; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PERIPLASMIC SOLUTE BINDING PROTEIN, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.YADAVA,M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH, AUTHOR 2 J.KOSS,S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA, AUTHOR 3 S.CHOWDHURY,J.LAFLEUR,J.LOVE,R.D.SEIDEL,K.L.WHALEN,J.A.GERLT, AUTHOR 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 3 15-NOV-23 5BRA 1 REMARK REVDAT 2 27-SEP-23 5BRA 1 SOURCE REMARK REVDAT 1 10-JUN-15 5BRA 0 JRNL AUTH U.YADAVA,M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO, JRNL AUTH 2 J.BENACH,J.KOSS,S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN, JRNL AUTH 3 S.CHAMALA,S.CHOWDHURY,J.LAFLEUR,J.LOVE,R.D.SEIDEL, JRNL AUTH 4 K.L.WHALEN,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE PERIPLASMIC SOLUTE BINDING JRNL TITL 2 PROTEIN (IPR025997) FROM OCHROBACTRUM ANTHROPI JRNL TITL 3 ATCC49188(OANT_2843, TARGET EFI-511085) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 7527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.6156 - 4.2791 1.00 2487 134 0.1667 0.2720 REMARK 3 2 4.2791 - 3.3997 0.98 2334 126 0.1753 0.2988 REMARK 3 3 3.3997 - 2.9709 1.00 2352 94 0.2189 0.3617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2413 REMARK 3 ANGLE : 1.386 3274 REMARK 3 CHIRALITY : 0.055 371 REMARK 3 PLANARITY : 0.005 425 REMARK 3 DIHEDRAL : 15.221 864 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5020 30.3253 -9.1828 REMARK 3 T TENSOR REMARK 3 T11: 0.1423 T22: 0.2846 REMARK 3 T33: 0.2373 T12: -0.0158 REMARK 3 T13: 0.0064 T23: -0.1058 REMARK 3 L TENSOR REMARK 3 L11: 0.2925 L22: 0.2912 REMARK 3 L33: 0.2492 L12: 0.1424 REMARK 3 L13: -0.0294 L23: 0.0207 REMARK 3 S TENSOR REMARK 3 S11: 0.1068 S12: -0.1400 S13: 0.2108 REMARK 3 S21: -0.0343 S22: -0.0350 S23: 0.0008 REMARK 3 S31: -0.0442 S32: -0.0044 S33: 0.0043 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5666 7.4377 -12.6852 REMARK 3 T TENSOR REMARK 3 T11: 0.2164 T22: 0.2434 REMARK 3 T33: 0.2486 T12: -0.0291 REMARK 3 T13: -0.0318 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.1052 L22: 0.1744 REMARK 3 L33: 0.1722 L12: -0.0382 REMARK 3 L13: 0.1154 L23: -0.0402 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: -0.1470 S13: -0.2681 REMARK 3 S21: -0.0231 S22: 0.0125 S23: 0.1288 REMARK 3 S31: 0.1456 S32: -0.1061 S33: -0.0009 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1989 32.6219 -4.2965 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: 0.3575 REMARK 3 T33: 0.3445 T12: -0.1912 REMARK 3 T13: 0.0664 T23: -0.2102 REMARK 3 L TENSOR REMARK 3 L11: 0.4213 L22: 0.0794 REMARK 3 L33: 0.1278 L12: -0.1800 REMARK 3 L13: -0.2224 L23: 0.0984 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: -0.2294 S13: 0.4265 REMARK 3 S21: -0.0288 S22: 0.0800 S23: -0.3327 REMARK 3 S31: -0.1465 S32: 0.1640 S33: 0.3578 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BRA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7605 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.970 REMARK 200 RESOLUTION RANGE LOW (A) : 23.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.30 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 29.10 REMARK 200 R MERGE FOR SHELL (I) : 0.98200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3D02 REMARK 200 REMARK 200 REMARK: PYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20 MM HEPES, PH 7.5, 5 MM REMARK 280 DTT, 10 MM D-RIBULOSE); RESERVOIR (2.5M AMMONIUM SULPHATE, 0.1M REMARK 280 TRIS, PH 8.5); CRYOPROTECTION (80% LITHIUM SULFATE, 20% REMARK 280 RESERVOIR), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.81450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.60200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.60200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.90725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.60200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.60200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.72175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.60200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.60200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.90725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.60200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.60200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.72175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.81450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 ASP A 10 REMARK 465 LEU A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 GLU A 14 REMARK 465 ASN A 15 REMARK 465 LEU A 16 REMARK 465 TYR A 17 REMARK 465 PHE A 18 REMARK 465 GLN A 19 REMARK 465 SER A 20 REMARK 465 MSE A 21 REMARK 465 GLU A 22 REMARK 465 GLY A 23 REMARK 465 VAL A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 LYS A 345 REMARK 465 TYR A 346 REMARK 465 ASP A 347 REMARK 465 PHE A 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 ASN A 39 CG OD1 ND2 REMARK 470 ASP A 40 CG OD1 OD2 REMARK 470 SER A 129 OG REMARK 470 ASP A 139 CG OD1 OD2 REMARK 470 ASP A 214 CG OD1 OD2 REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 94 NZ LYS A 160 6454 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 -78.06 -45.73 REMARK 500 GLU A 33 -175.32 -170.21 REMARK 500 LEU A 34 -145.46 -124.47 REMARK 500 THR A 36 57.09 -112.41 REMARK 500 ALA A 38 178.03 68.28 REMARK 500 ARG A 123 25.35 -79.76 REMARK 500 PHE A 145 -176.80 -175.72 REMARK 500 THR A 176 14.21 -147.52 REMARK 500 ALA A 224 -32.41 -171.03 REMARK 500 PRO A 226 40.54 -66.07 REMARK 500 ASP A 227 31.47 179.23 REMARK 500 ILE A 228 95.42 32.92 REMARK 500 THR A 229 26.26 -143.44 REMARK 500 ALA A 266 -2.62 -150.83 REMARK 500 PHE A 280 -177.16 -176.66 REMARK 500 LYS A 301 40.07 -84.73 REMARK 500 LYS A 326 78.65 -119.01 REMARK 500 THR A 339 3.39 -153.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 227 ILE A 228 46.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-511085 RELATED DB: TARGETTRACK DBREF 5BRA A 22 348 UNP A6X2U7 A6X2U7_OCHA4 22 348 SEQADV 5BRA MSE A -1 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA HIS A 0 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA HIS A 1 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA HIS A 2 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA HIS A 3 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA HIS A 4 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA HIS A 5 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA SER A 6 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA SER A 7 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA GLY A 8 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA VAL A 9 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA ASP A 10 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA LEU A 11 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA GLY A 12 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA THR A 13 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA GLU A 14 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA ASN A 15 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA LEU A 16 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA TYR A 17 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA PHE A 18 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA GLN A 19 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA SER A 20 UNP A6X2U7 EXPRESSION TAG SEQADV 5BRA MSE A 21 UNP A6X2U7 EXPRESSION TAG SEQRES 1 A 350 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 350 GLY THR GLU ASN LEU TYR PHE GLN SER MSE GLU GLY VAL SEQRES 3 A 350 VAL ASP THR SER LYS ILE ASN LYS GLU LEU ILE THR THR SEQRES 4 A 350 ALA ASN ASP LYS LYS TYR THR ILE ALA THR VAL VAL LYS SEQRES 5 A 350 VAL ASP GLY ILE ALA TRP PHE ASP ARG MSE ARG ASP GLY SEQRES 6 A 350 VAL ASP GLN PHE LYS ALA ASP THR GLY ASN ASP VAL TRP SEQRES 7 A 350 MSE VAL GLY PRO SER GLN ALA ASP ALA ALA ALA GLN VAL SEQRES 8 A 350 GLN ILE VAL GLU ASN LEU ILE ALA GLN GLY VAL ASP ALA SEQRES 9 A 350 ILE ALA ILE VAL PRO PHE SER VAL GLU ALA VAL GLU PRO SEQRES 10 A 350 VAL LEU LYS LYS ALA ARG GLU ARG GLY ILE VAL VAL ILE SEQRES 11 A 350 SER HIS GLU ALA SER ASN ILE GLN ASN VAL ASP TYR ASP SEQRES 12 A 350 ILE GLU ALA PHE ASP ASN LYS ALA TYR GLY ALA ASN LEU SEQRES 13 A 350 MSE LYS GLU LEU GLY LYS SER MSE GLY GLY LYS GLY LYS SEQRES 14 A 350 TYR VAL THR THR VAL GLY SER LEU THR SER LYS SER GLN SEQRES 15 A 350 MSE GLU TRP ILE ASP GLY ALA VAL GLU TYR GLN LYS ALA SEQRES 16 A 350 ASN PHE PRO GLU MSE SER GLU ALA THR GLY ARG LEU GLU SEQRES 17 A 350 THR TYR ASP ASP ALA ASN THR ASP TYR ASN LYS LEU LYS SEQRES 18 A 350 GLU ALA MSE THR ALA TYR PRO ASP ILE THR GLY ILE LEU SEQRES 19 A 350 GLY ALA PRO MSE PRO THR SER ALA GLY ALA GLY ARG LEU SEQRES 20 A 350 ILE ALA GLU GLY GLY LEU LYS GLY LYS VAL PHE PHE ALA SEQRES 21 A 350 GLY THR GLY LEU VAL SER VAL ALA GLY GLU TYR ILE LYS SEQRES 22 A 350 ASN ASP ASP VAL GLN TYR ILE GLN PHE TRP ASP PRO ALA SEQRES 23 A 350 VAL ALA GLY TYR ALA MSE ASN MSE LEU ALA VAL ALA ALA SEQRES 24 A 350 LEU GLU LYS LYS ASN ASP GLN ILE LYS ALA GLY LEU ASN SEQRES 25 A 350 LEU GLY LEU PRO GLY TYR GLU SER LEU LEU ALA PRO ASP SEQRES 26 A 350 ALA ALA LYS PRO ASN LEU LEU TYR GLY ALA GLY TRP VAL SEQRES 27 A 350 GLY VAL THR LYS GLU ASN MSE ASP LYS TYR ASP PHE MODRES 5BRA MSE A 60 MET MODIFIED RESIDUE MODRES 5BRA MSE A 77 MET MODIFIED RESIDUE MODRES 5BRA MSE A 155 MET MODIFIED RESIDUE MODRES 5BRA MSE A 162 MET MODIFIED RESIDUE MODRES 5BRA MSE A 181 MET MODIFIED RESIDUE MODRES 5BRA MSE A 198 MET MODIFIED RESIDUE MODRES 5BRA MSE A 222 MET MODIFIED RESIDUE MODRES 5BRA MSE A 236 MET MODIFIED RESIDUE MODRES 5BRA MSE A 290 MET MODIFIED RESIDUE MODRES 5BRA MSE A 292 MET MODIFIED RESIDUE MODRES 5BRA MSE A 343 MET MODIFIED RESIDUE HET MSE A 60 8 HET MSE A 77 8 HET MSE A 155 8 HET MSE A 162 8 HET MSE A 181 8 HET MSE A 198 8 HET MSE A 222 8 HET MSE A 236 8 HET MSE A 290 8 HET MSE A 292 8 HET MSE A 343 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 HOH *(H2 O) HELIX 1 AA1 ILE A 54 GLY A 72 1 19 HELIX 2 AA2 ASP A 84 GLY A 99 1 16 HELIX 3 AA3 SER A 109 ARG A 123 1 15 HELIX 4 AA4 ASP A 146 GLY A 163 1 18 HELIX 5 AA5 SER A 177 PHE A 195 1 19 HELIX 6 AA6 ASP A 210 THR A 223 1 14 HELIX 7 AA7 MSE A 236 GLU A 248 1 13 HELIX 8 AA8 LEU A 262 ASN A 272 1 11 HELIX 9 AA9 ASP A 282 GLU A 299 1 18 SHEET 1 AA1 6 ASP A 74 VAL A 78 0 SHEET 2 AA1 6 THR A 44 VAL A 48 1 N THR A 47 O TRP A 76 SHEET 3 AA1 6 ALA A 102 ILE A 105 1 O ALA A 104 N VAL A 48 SHEET 4 AA1 6 VAL A 126 HIS A 130 1 O ILE A 128 N ILE A 103 SHEET 5 AA1 6 TYR A 140 GLU A 143 1 O ILE A 142 N SER A 129 SHEET 6 AA1 6 LEU A 329 TYR A 331 1 O LEU A 330 N GLU A 143 SHEET 1 AA2 3 SER A 199 GLU A 200 0 SHEET 2 AA2 3 LYS A 167 VAL A 172 1 N TYR A 168 O SER A 199 SHEET 3 AA2 3 LEU A 205 GLU A 206 1 O LEU A 205 N VAL A 172 SHEET 1 AA3 6 SER A 199 GLU A 200 0 SHEET 2 AA3 6 LYS A 167 VAL A 172 1 N TYR A 168 O SER A 199 SHEET 3 AA3 6 GLY A 230 GLY A 233 1 O LEU A 232 N VAL A 169 SHEET 4 AA3 6 PHE A 256 THR A 260 1 O THR A 260 N GLY A 233 SHEET 5 AA3 6 TYR A 277 PHE A 280 1 O GLN A 279 N GLY A 259 SHEET 6 AA3 6 VAL A 336 VAL A 338 -1 O VAL A 336 N PHE A 280 LINK C ARG A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N ARG A 61 1555 1555 1.33 LINK C TRP A 76 N MSE A 77 1555 1555 1.33 LINK C MSE A 77 N VAL A 78 1555 1555 1.33 LINK C LEU A 154 N MSE A 155 1555 1555 1.32 LINK C MSE A 155 N LYS A 156 1555 1555 1.33 LINK C SER A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N GLY A 163 1555 1555 1.32 LINK C GLN A 180 N MSE A 181 1555 1555 1.33 LINK C MSE A 181 N GLU A 182 1555 1555 1.33 LINK C GLU A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N SER A 199 1555 1555 1.33 LINK C ALA A 221 N MSE A 222 1555 1555 1.33 LINK C MSE A 222 N THR A 223 1555 1555 1.32 LINK C PRO A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N PRO A 237 1555 1555 1.34 LINK C ALA A 289 N MSE A 290 1555 1555 1.32 LINK C MSE A 290 N ASN A 291 1555 1555 1.32 LINK C ASN A 291 N MSE A 292 1555 1555 1.33 LINK C MSE A 292 N LEU A 293 1555 1555 1.33 LINK C ASN A 342 N MSE A 343 1555 1555 1.33 LINK C MSE A 343 N ASP A 344 1555 1555 1.33 CISPEP 1 ALA A 38 ASN A 39 0 -1.10 CISPEP 2 ASN A 39 ASP A 40 0 -20.02 CISPEP 3 GLY A 250 LEU A 251 0 -10.78 CISPEP 4 TYR A 331 GLY A 332 0 21.22 CRYST1 81.204 81.204 103.629 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012315 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009650 0.00000