HEADER LIGASE 02-JUN-15 5BSM TITLE CRYSTAL STRUCTURE OF 4-COUMARATE:COA LIGASE COMPLEXED WITH MAGNESIUM TITLE 2 AND ADENOSINE TRIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-COUMARATE--COA LIGASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4CL 2,4-COUMAROYL-COA SYNTHASE 2; COMPND 5 EC: 6.2.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: 4CL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 4-COUMARATE:COA LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,S.K.NAIR REVDAT 2 06-MAR-24 5BSM 1 JRNL REMARK LINK REVDAT 1 11-MAY-16 5BSM 0 JRNL AUTH Z.LI,S.K.NAIR JRNL TITL STRUCTURAL BASIS FOR SPECIFICITY AND FLEXIBILITY IN A PLANT JRNL TITL 2 4-COUMARATE:COA LIGASE. JRNL REF STRUCTURE V. 23 2032 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26412334 JRNL DOI 10.1016/J.STR.2015.08.012 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 43848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2515 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8176 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 356 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.23000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -2.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.424 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.260 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8410 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11428 ; 1.546 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1058 ; 6.342 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 338 ;36.725 ;24.970 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1456 ;16.239 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;14.212 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1320 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6230 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5BSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46252 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL (PEG) REMARK 280 3350 AND 0.2 M POTASSIUM NITRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.67850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.28650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.15550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.28650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.67850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.15550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 4 REMARK 465 THR A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 ALA A 538 REMARK 465 GLY A 539 REMARK 465 LEU A 540 REMARK 465 PRO A 541 REMARK 465 ASN A 542 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LYS B 3 REMARK 465 ASP B 4 REMARK 465 THR B 5 REMARK 465 LYS B 6 REMARK 465 GLN B 7 REMARK 465 ALA B 538 REMARK 465 GLY B 539 REMARK 465 LEU B 540 REMARK 465 PRO B 541 REMARK 465 ASN B 542 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 782 O HOH B 819 1.84 REMARK 500 CG GLN A 259 O HOH A 883 2.03 REMARK 500 O HOH B 710 O HOH B 819 2.09 REMARK 500 O ALA A 537 O HOH A 701 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 38 23.60 -149.61 REMARK 500 LYS A 77 -5.11 76.08 REMARK 500 ASP A 153 -71.49 -112.27 REMARK 500 GLU A 157 115.91 -22.91 REMARK 500 LEU A 186 69.24 -115.58 REMARK 500 VAL A 244 -64.61 -98.99 REMARK 500 ALA A 309 -30.73 80.61 REMARK 500 ASP A 402 68.10 -157.98 REMARK 500 ASP A 434 -175.94 -178.04 REMARK 500 LYS A 443 -124.69 47.01 REMARK 500 PHE B 38 24.94 -143.93 REMARK 500 ASP B 153 -71.67 -115.66 REMARK 500 GLU B 157 113.88 -33.74 REMARK 500 PRO B 196 132.26 -32.77 REMARK 500 CYS B 231 70.71 -112.65 REMARK 500 VAL B 244 -61.11 -92.99 REMARK 500 ALA B 309 -25.06 77.96 REMARK 500 ASN B 326 50.13 -116.01 REMARK 500 ASP B 402 76.11 -152.33 REMARK 500 ASP B 434 -178.29 -178.95 REMARK 500 LYS B 443 -133.85 54.90 REMARK 500 GLU B 473 -80.28 -33.86 REMARK 500 ASN B 487 118.15 -30.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 600 O2G REMARK 620 2 ATP A 600 O2B 90.3 REMARK 620 3 HOH A 728 O 170.3 84.6 REMARK 620 4 HOH A 770 O 98.4 101.6 90.7 REMARK 620 5 HOH A 817 O 86.6 173.6 97.7 84.4 REMARK 620 6 HOH A 864 O 87.4 91.3 84.5 165.8 82.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 600 O2G REMARK 620 2 ATP B 600 O2B 76.1 REMARK 620 3 HOH B 719 O 91.8 155.1 REMARK 620 4 HOH B 726 O 158.1 83.2 104.6 REMARK 620 5 HOH B 736 O 86.6 86.9 70.5 85.3 REMARK 620 6 HOH B 815 O 95.0 99.5 103.3 95.3 173.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BSR RELATED DB: PDB REMARK 900 RELATED ID: 5BST RELATED DB: PDB REMARK 900 RELATED ID: 5BSU RELATED DB: PDB REMARK 900 RELATED ID: 5BSV RELATED DB: PDB REMARK 900 RELATED ID: 5BSW RELATED DB: PDB DBREF 5BSM A 1 542 UNP O24146 4CL2_TOBAC 1 542 DBREF 5BSM B 1 542 UNP O24146 4CL2_TOBAC 1 542 SEQRES 1 A 542 MET GLU LYS ASP THR LYS GLN VAL ASP ILE ILE PHE ARG SEQRES 2 A 542 SER LYS LEU PRO ASP ILE TYR ILE PRO ASN HIS LEU PRO SEQRES 3 A 542 LEU HIS SER TYR CYS PHE GLU ASN ILE SER GLU PHE SER SEQRES 4 A 542 SER ARG PRO CYS LEU ILE ASN GLY ALA ASN LYS GLN ILE SEQRES 5 A 542 TYR THR TYR ALA ASP VAL GLU LEU ASN SER ARG LYS VAL SEQRES 6 A 542 ALA ALA GLY LEU HIS LYS GLN GLY ILE GLN PRO LYS ASP SEQRES 7 A 542 THR ILE MET ILE LEU LEU PRO ASN SER PRO GLU PHE VAL SEQRES 8 A 542 PHE ALA PHE ILE GLY ALA SER TYR LEU GLY ALA ILE SER SEQRES 9 A 542 THR MET ALA ASN PRO LEU PHE THR PRO ALA GLU VAL VAL SEQRES 10 A 542 LYS GLN ALA LYS ALA SER SER ALA LYS ILE ILE VAL THR SEQRES 11 A 542 GLN ALA CYS HIS VAL ASN LYS VAL LYS ASP TYR ALA PHE SEQRES 12 A 542 GLU ASN ASP VAL LYS ILE ILE CYS ILE ASP SER ALA PRO SEQRES 13 A 542 GLU GLY CYS LEU HIS PHE SER VAL LEU THR GLN ALA ASN SEQRES 14 A 542 GLU HIS ASP ILE PRO GLU VAL GLU ILE GLN PRO ASP ASP SEQRES 15 A 542 VAL VAL ALA LEU PRO TYR SER SER GLY THR THR GLY LEU SEQRES 16 A 542 PRO LYS GLY VAL MET LEU THR HIS LYS GLY LEU VAL THR SEQRES 17 A 542 SER VAL ALA GLN GLN VAL ASP GLY GLU ASN PRO ASN LEU SEQRES 18 A 542 TYR ILE HIS SER GLU ASP VAL MET LEU CYS VAL LEU PRO SEQRES 19 A 542 LEU PHE HIS ILE TYR SER LEU ASN SER VAL LEU LEU CYS SEQRES 20 A 542 GLY LEU ARG VAL GLY ALA ALA ILE LEU ILE MET GLN LYS SEQRES 21 A 542 PHE ASP ILE VAL SER PHE LEU GLU LEU ILE GLN ARG TYR SEQRES 22 A 542 LYS VAL THR ILE GLY PRO PHE VAL PRO PRO ILE VAL LEU SEQRES 23 A 542 ALA ILE ALA LYS SER PRO MET VAL ASP ASP TYR ASP LEU SEQRES 24 A 542 SER SER VAL ARG THR VAL MET SER GLY ALA ALA PRO LEU SEQRES 25 A 542 GLY LYS GLU LEU GLU ASP THR VAL ARG ALA LYS PHE PRO SEQRES 26 A 542 ASN ALA LYS LEU GLY GLN GLY TYR GLY MET THR GLU ALA SEQRES 27 A 542 GLY PRO VAL LEU ALA MET CYS LEU ALA PHE ALA LYS GLU SEQRES 28 A 542 PRO PHE GLU ILE LYS SER GLY ALA CYS GLY THR VAL VAL SEQRES 29 A 542 ARG ASN ALA GLU MET LYS ILE VAL ASP PRO LYS THR GLY SEQRES 30 A 542 ASN SER LEU PRO ARG ASN GLN SER GLY GLU ILE CYS ILE SEQRES 31 A 542 ARG GLY ASP GLN ILE MET LYS GLY TYR LEU ASN ASP PRO SEQRES 32 A 542 GLU ALA THR ALA ARG THR ILE ASP LYS GLU GLY TRP LEU SEQRES 33 A 542 TYR THR GLY ASP ILE GLY TYR ILE ASP ASP ASP ASP GLU SEQRES 34 A 542 LEU PHE ILE VAL ASP ARG LEU LYS GLU LEU ILE LYS TYR SEQRES 35 A 542 LYS GLY PHE GLN VAL ALA PRO ALA GLU LEU GLU ALA LEU SEQRES 36 A 542 LEU LEU ASN HIS PRO ASN ILE SER ASP ALA ALA VAL VAL SEQRES 37 A 542 PRO MET LYS ASP GLU GLN ALA GLY GLU VAL PRO VAL ALA SEQRES 38 A 542 PHE VAL VAL ARG SER ASN GLY SER THR ILE THR GLU ASP SEQRES 39 A 542 GLU VAL LYS ASP PHE ILE SER LYS GLN VAL ILE PHE TYR SEQRES 40 A 542 LYS ARG ILE LYS ARG VAL PHE PHE VAL ASP ALA ILE PRO SEQRES 41 A 542 LYS SER PRO SER GLY LYS ILE LEU ARG LYS ASP LEU ARG SEQRES 42 A 542 ALA LYS LEU ALA ALA GLY LEU PRO ASN SEQRES 1 B 542 MET GLU LYS ASP THR LYS GLN VAL ASP ILE ILE PHE ARG SEQRES 2 B 542 SER LYS LEU PRO ASP ILE TYR ILE PRO ASN HIS LEU PRO SEQRES 3 B 542 LEU HIS SER TYR CYS PHE GLU ASN ILE SER GLU PHE SER SEQRES 4 B 542 SER ARG PRO CYS LEU ILE ASN GLY ALA ASN LYS GLN ILE SEQRES 5 B 542 TYR THR TYR ALA ASP VAL GLU LEU ASN SER ARG LYS VAL SEQRES 6 B 542 ALA ALA GLY LEU HIS LYS GLN GLY ILE GLN PRO LYS ASP SEQRES 7 B 542 THR ILE MET ILE LEU LEU PRO ASN SER PRO GLU PHE VAL SEQRES 8 B 542 PHE ALA PHE ILE GLY ALA SER TYR LEU GLY ALA ILE SER SEQRES 9 B 542 THR MET ALA ASN PRO LEU PHE THR PRO ALA GLU VAL VAL SEQRES 10 B 542 LYS GLN ALA LYS ALA SER SER ALA LYS ILE ILE VAL THR SEQRES 11 B 542 GLN ALA CYS HIS VAL ASN LYS VAL LYS ASP TYR ALA PHE SEQRES 12 B 542 GLU ASN ASP VAL LYS ILE ILE CYS ILE ASP SER ALA PRO SEQRES 13 B 542 GLU GLY CYS LEU HIS PHE SER VAL LEU THR GLN ALA ASN SEQRES 14 B 542 GLU HIS ASP ILE PRO GLU VAL GLU ILE GLN PRO ASP ASP SEQRES 15 B 542 VAL VAL ALA LEU PRO TYR SER SER GLY THR THR GLY LEU SEQRES 16 B 542 PRO LYS GLY VAL MET LEU THR HIS LYS GLY LEU VAL THR SEQRES 17 B 542 SER VAL ALA GLN GLN VAL ASP GLY GLU ASN PRO ASN LEU SEQRES 18 B 542 TYR ILE HIS SER GLU ASP VAL MET LEU CYS VAL LEU PRO SEQRES 19 B 542 LEU PHE HIS ILE TYR SER LEU ASN SER VAL LEU LEU CYS SEQRES 20 B 542 GLY LEU ARG VAL GLY ALA ALA ILE LEU ILE MET GLN LYS SEQRES 21 B 542 PHE ASP ILE VAL SER PHE LEU GLU LEU ILE GLN ARG TYR SEQRES 22 B 542 LYS VAL THR ILE GLY PRO PHE VAL PRO PRO ILE VAL LEU SEQRES 23 B 542 ALA ILE ALA LYS SER PRO MET VAL ASP ASP TYR ASP LEU SEQRES 24 B 542 SER SER VAL ARG THR VAL MET SER GLY ALA ALA PRO LEU SEQRES 25 B 542 GLY LYS GLU LEU GLU ASP THR VAL ARG ALA LYS PHE PRO SEQRES 26 B 542 ASN ALA LYS LEU GLY GLN GLY TYR GLY MET THR GLU ALA SEQRES 27 B 542 GLY PRO VAL LEU ALA MET CYS LEU ALA PHE ALA LYS GLU SEQRES 28 B 542 PRO PHE GLU ILE LYS SER GLY ALA CYS GLY THR VAL VAL SEQRES 29 B 542 ARG ASN ALA GLU MET LYS ILE VAL ASP PRO LYS THR GLY SEQRES 30 B 542 ASN SER LEU PRO ARG ASN GLN SER GLY GLU ILE CYS ILE SEQRES 31 B 542 ARG GLY ASP GLN ILE MET LYS GLY TYR LEU ASN ASP PRO SEQRES 32 B 542 GLU ALA THR ALA ARG THR ILE ASP LYS GLU GLY TRP LEU SEQRES 33 B 542 TYR THR GLY ASP ILE GLY TYR ILE ASP ASP ASP ASP GLU SEQRES 34 B 542 LEU PHE ILE VAL ASP ARG LEU LYS GLU LEU ILE LYS TYR SEQRES 35 B 542 LYS GLY PHE GLN VAL ALA PRO ALA GLU LEU GLU ALA LEU SEQRES 36 B 542 LEU LEU ASN HIS PRO ASN ILE SER ASP ALA ALA VAL VAL SEQRES 37 B 542 PRO MET LYS ASP GLU GLN ALA GLY GLU VAL PRO VAL ALA SEQRES 38 B 542 PHE VAL VAL ARG SER ASN GLY SER THR ILE THR GLU ASP SEQRES 39 B 542 GLU VAL LYS ASP PHE ILE SER LYS GLN VAL ILE PHE TYR SEQRES 40 B 542 LYS ARG ILE LYS ARG VAL PHE PHE VAL ASP ALA ILE PRO SEQRES 41 B 542 LYS SER PRO SER GLY LYS ILE LEU ARG LYS ASP LEU ARG SEQRES 42 B 542 ALA LYS LEU ALA ALA GLY LEU PRO ASN HET ATP A 600 31 HET MG A 601 1 HET ATP B 600 31 HET MG B 601 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *356(H2 O) HELIX 1 AA1 PRO A 26 PHE A 32 1 7 HELIX 2 AA2 ASN A 34 PHE A 38 5 5 HELIX 3 AA3 TYR A 55 GLN A 72 1 18 HELIX 4 AA4 SER A 87 LEU A 100 1 14 HELIX 5 AA5 THR A 112 SER A 124 1 13 HELIX 6 AA6 GLN A 131 LYS A 137 5 7 HELIX 7 AA7 VAL A 138 ASN A 145 1 8 HELIX 8 AA8 PHE A 162 GLN A 167 1 6 HELIX 9 AA9 ASN A 169 ILE A 173 5 5 HELIX 10 AB1 HIS A 203 ASP A 215 1 13 HELIX 11 AB2 HIS A 237 VAL A 244 1 8 HELIX 12 AB3 VAL A 244 GLY A 252 1 9 HELIX 13 AB4 ASP A 262 LYS A 274 1 13 HELIX 14 AB5 VAL A 281 SER A 291 1 11 HELIX 15 AB6 MET A 293 TYR A 297 5 5 HELIX 16 AB7 GLY A 313 LYS A 323 1 11 HELIX 17 AB8 THR A 336 GLY A 339 5 4 HELIX 18 AB9 LEU A 346 ALA A 349 5 4 HELIX 19 AC1 ASP A 402 ILE A 410 1 9 HELIX 20 AC2 LYS A 437 LEU A 439 5 3 HELIX 21 AC3 ALA A 448 ASN A 458 1 11 HELIX 22 AC4 THR A 492 VAL A 504 1 13 HELIX 23 AC5 ILE A 505 ARG A 509 5 5 HELIX 24 AC6 LEU A 528 ALA A 537 1 10 HELIX 25 AC7 PRO B 26 PHE B 32 1 7 HELIX 26 AC8 ASN B 34 PHE B 38 5 5 HELIX 27 AC9 TYR B 55 GLN B 72 1 18 HELIX 28 AD1 SER B 87 LEU B 100 1 14 HELIX 29 AD2 THR B 112 SER B 123 1 12 HELIX 30 AD3 GLN B 131 CYS B 133 5 3 HELIX 31 AD4 HIS B 134 GLU B 144 1 11 HELIX 32 AD5 PHE B 162 GLN B 167 1 6 HELIX 33 AD6 ASN B 169 ILE B 173 5 5 HELIX 34 AD7 HIS B 203 ASP B 215 1 13 HELIX 35 AD8 HIS B 237 VAL B 244 1 8 HELIX 36 AD9 VAL B 244 GLY B 252 1 9 HELIX 37 AE1 ASP B 262 LYS B 274 1 13 HELIX 38 AE2 VAL B 281 SER B 291 1 11 HELIX 39 AE3 PRO B 292 TYR B 297 5 6 HELIX 40 AE4 GLY B 313 ALA B 322 1 10 HELIX 41 AE5 THR B 336 GLY B 339 5 4 HELIX 42 AE6 LEU B 346 ALA B 349 5 4 HELIX 43 AE7 ASP B 402 ILE B 410 1 9 HELIX 44 AE8 LYS B 437 LEU B 439 5 3 HELIX 45 AE9 ALA B 448 HIS B 459 1 12 HELIX 46 AF1 THR B 492 LYS B 502 1 11 HELIX 47 AF2 ILE B 505 ARG B 509 5 5 HELIX 48 AF3 LEU B 528 ALA B 537 1 10 SHEET 1 AA1 4 ILE A 52 THR A 54 0 SHEET 2 AA1 4 PRO A 42 ASN A 46 -1 N CYS A 43 O TYR A 53 SHEET 3 AA1 4 ALA A 254 ILE A 257 1 O ILE A 257 N ILE A 45 SHEET 4 AA1 4 VAL A 228 CYS A 231 1 N CYS A 231 O LEU A 256 SHEET 1 AA2 8 LEU A 160 HIS A 161 0 SHEET 2 AA2 8 LYS A 148 CYS A 151 1 N ILE A 149 O LEU A 160 SHEET 3 AA2 8 ALA A 125 THR A 130 1 N ILE A 128 O ILE A 150 SHEET 4 AA2 8 THR A 79 ILE A 82 1 N THR A 79 O LYS A 126 SHEET 5 AA2 8 ILE A 103 MET A 106 1 O THR A 105 N ILE A 82 SHEET 6 AA2 8 VAL A 183 LEU A 186 1 O LEU A 186 N SER A 104 SHEET 7 AA2 8 VAL A 199 THR A 202 -1 O LEU A 201 N VAL A 184 SHEET 8 AA2 8 GLY A 398 TYR A 399 -1 O GLY A 398 N MET A 200 SHEET 1 AA3 5 ILE A 277 PHE A 280 0 SHEET 2 AA3 5 THR A 304 SER A 307 1 O MET A 306 N PHE A 280 SHEET 3 AA3 5 LYS A 328 GLY A 334 1 O LYS A 328 N VAL A 305 SHEET 4 AA3 5 VAL A 341 MET A 344 -1 O LEU A 342 N TYR A 333 SHEET 5 AA3 5 THR A 362 VAL A 363 -1 O THR A 362 N MET A 344 SHEET 1 AA4 4 GLU A 368 VAL A 372 0 SHEET 2 AA4 4 GLY A 386 ARG A 391 -1 O GLU A 387 N VAL A 372 SHEET 3 AA4 4 LEU A 416 ILE A 424 -1 O LEU A 416 N ILE A 390 SHEET 4 AA4 4 LEU A 430 ARG A 435 -1 O ASP A 434 N ILE A 421 SHEET 1 AA5 2 ILE A 440 TYR A 442 0 SHEET 2 AA5 2 PHE A 445 VAL A 447 -1 O VAL A 447 N ILE A 440 SHEET 1 AA6 3 ILE A 462 ASP A 472 0 SHEET 2 AA6 3 GLY A 476 ARG A 485 -1 O PHE A 482 N ALA A 466 SHEET 3 AA6 3 ARG A 512 PHE A 515 1 O PHE A 514 N ALA A 481 SHEET 1 AA7 4 ILE B 52 THR B 54 0 SHEET 2 AA7 4 PRO B 42 ASN B 46 -1 N CYS B 43 O TYR B 53 SHEET 3 AA7 4 ALA B 254 ILE B 257 1 O ILE B 257 N ILE B 45 SHEET 4 AA7 4 VAL B 228 CYS B 231 1 N MET B 229 O ALA B 254 SHEET 1 AA8 8 LEU B 160 HIS B 161 0 SHEET 2 AA8 8 LYS B 148 CYS B 151 1 N ILE B 149 O LEU B 160 SHEET 3 AA8 8 ALA B 125 THR B 130 1 N THR B 130 O ILE B 150 SHEET 4 AA8 8 THR B 79 ILE B 82 1 N THR B 79 O LYS B 126 SHEET 5 AA8 8 ILE B 103 MET B 106 1 O THR B 105 N ILE B 80 SHEET 6 AA8 8 VAL B 183 LEU B 186 1 O LEU B 186 N SER B 104 SHEET 7 AA8 8 VAL B 199 THR B 202 -1 O LEU B 201 N VAL B 184 SHEET 8 AA8 8 GLY B 398 TYR B 399 -1 O GLY B 398 N MET B 200 SHEET 1 AA9 5 ILE B 277 PHE B 280 0 SHEET 2 AA9 5 THR B 304 SER B 307 1 O THR B 304 N GLY B 278 SHEET 3 AA9 5 LYS B 328 GLY B 334 1 O LYS B 328 N VAL B 305 SHEET 4 AA9 5 VAL B 341 MET B 344 -1 O LEU B 342 N TYR B 333 SHEET 5 AA9 5 THR B 362 VAL B 363 -1 O THR B 362 N MET B 344 SHEET 1 AB1 4 GLU B 368 VAL B 372 0 SHEET 2 AB1 4 GLY B 386 ARG B 391 -1 O GLU B 387 N VAL B 372 SHEET 3 AB1 4 LEU B 416 ILE B 424 -1 O GLY B 422 N GLY B 386 SHEET 4 AB1 4 LEU B 430 ARG B 435 -1 O VAL B 433 N ILE B 421 SHEET 1 AB2 2 ILE B 440 TYR B 442 0 SHEET 2 AB2 2 PHE B 445 VAL B 447 -1 O VAL B 447 N ILE B 440 SHEET 1 AB3 3 ILE B 462 MET B 470 0 SHEET 2 AB3 3 VAL B 478 ARG B 485 -1 O VAL B 484 N ASP B 464 SHEET 3 AB3 3 VAL B 513 VAL B 516 1 O PHE B 514 N ALA B 481 LINK O2G ATP A 600 MG MG A 601 1555 1555 2.01 LINK O2B ATP A 600 MG MG A 601 1555 1555 2.14 LINK MG MG A 601 O HOH A 728 1555 1555 2.15 LINK MG MG A 601 O HOH A 770 1555 1555 1.97 LINK MG MG A 601 O HOH A 817 1555 1555 2.16 LINK MG MG A 601 O HOH A 864 1555 1555 2.39 LINK O2G ATP B 600 MG MG B 601 1555 1555 1.97 LINK O2B ATP B 600 MG MG B 601 1555 1555 2.22 LINK MG MG B 601 O HOH B 719 1555 1555 2.13 LINK MG MG B 601 O HOH B 726 1555 1555 2.15 LINK MG MG B 601 O HOH B 736 1555 1555 2.34 LINK MG MG B 601 O HOH B 815 1555 1555 2.06 CISPEP 1 GLY A 339 PRO A 340 0 9.77 CISPEP 2 GLY B 339 PRO B 340 0 5.54 SITE 1 AC1 28 SER A 189 SER A 190 GLY A 191 THR A 192 SITE 2 AC1 28 THR A 193 LYS A 197 HIS A 237 ALA A 309 SITE 3 AC1 28 ALA A 310 PRO A 311 GLN A 331 GLY A 332 SITE 4 AC1 28 TYR A 333 GLY A 334 MET A 335 THR A 336 SITE 5 AC1 28 ASP A 420 ILE A 432 ARG A 435 LYS A 526 SITE 6 AC1 28 MG A 601 HOH A 711 HOH A 725 HOH A 728 SITE 7 AC1 28 HOH A 770 HOH A 817 HOH A 835 HOH A 864 SITE 1 AC2 5 ATP A 600 HOH A 728 HOH A 770 HOH A 817 SITE 2 AC2 5 HOH A 864 SITE 1 AC3 26 SER B 189 SER B 190 GLY B 191 THR B 192 SITE 2 AC3 26 THR B 193 LYS B 197 HIS B 237 ALA B 309 SITE 3 AC3 26 ALA B 310 PRO B 311 GLN B 331 GLY B 332 SITE 4 AC3 26 TYR B 333 GLY B 334 MET B 335 THR B 336 SITE 5 AC3 26 ASP B 420 ILE B 432 ARG B 435 LYS B 526 SITE 6 AC3 26 MG B 601 HOH B 712 HOH B 719 HOH B 726 SITE 7 AC3 26 HOH B 736 HOH B 815 SITE 1 AC4 5 ATP B 600 HOH B 719 HOH B 726 HOH B 736 SITE 2 AC4 5 HOH B 815 CRYST1 91.357 96.311 122.573 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010946 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008158 0.00000