HEADER LIGASE 02-JUN-15 5BSU TITLE CRYSTAL STRUCTURE OF 4-COUMARATE:COA LIGASE COMPLEXED WITH CAFFEOYL TITLE 2 ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-COUMARATE--COA LIGASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 4CL 2,4-COUMAROYL-COA SYNTHASE 2; COMPND 5 EC: 6.2.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: 4CL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 4-COUMARATE:COA LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,S.K.NAIR REVDAT 2 06-MAR-24 5BSU 1 JRNL REMARK LINK REVDAT 1 11-MAY-16 5BSU 0 JRNL AUTH Z.LI,S.K.NAIR JRNL TITL STRUCTURAL BASIS FOR SPECIFICITY AND FLEXIBILITY IN A PLANT JRNL TITL 2 4-COUMARATE:COA LIGASE. JRNL REF STRUCTURE V. 23 2032 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26412334 JRNL DOI 10.1016/J.STR.2015.08.012 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 59972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3202 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 220 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 499 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.10000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -2.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.976 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4210 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5716 ; 1.156 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 5.271 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;34.536 ;24.970 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 728 ;12.338 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.140 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 659 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3128 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2644 ; 0.491 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4298 ; 0.970 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1566 ; 1.639 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1418 ; 2.814 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5BSU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210482. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1271 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63432 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14.4% (W/V) PEG 8000, 0.08 M SODIUM REMARK 280 CACODYLATE PH 6.5, 0.16 M CALCIUM ACETATE, AND 20% (V/V) REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.83900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.17400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.17400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.41950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.17400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.17400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 136.25850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.17400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.17400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.41950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.17400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.17400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 136.25850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.83900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 4 REMARK 465 THR A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 ALA A 537 REMARK 465 ALA A 538 REMARK 465 GLY A 539 REMARK 465 LEU A 540 REMARK 465 PRO A 541 REMARK 465 ASN A 542 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 365 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 365 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 38 26.80 -144.11 REMARK 500 LYS A 77 -1.09 77.86 REMARK 500 CYS A 231 77.74 -115.93 REMARK 500 VAL A 244 -64.88 -100.44 REMARK 500 ALA A 309 -15.80 86.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 178 O REMARK 620 2 HOH A 727 O 79.4 REMARK 620 3 HOH A 750 O 136.4 72.9 REMARK 620 4 HOH A 838 O 81.5 104.8 74.0 REMARK 620 5 HOH A1037 O 83.3 162.0 124.1 77.3 REMARK 620 6 HOH A1074 O 86.7 87.4 124.1 161.0 86.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4UV A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BSM RELATED DB: PDB REMARK 900 RELATED ID: 5BSR RELATED DB: PDB REMARK 900 RELATED ID: 5BST RELATED DB: PDB REMARK 900 RELATED ID: 5BSV RELATED DB: PDB REMARK 900 RELATED ID: 5BSW RELATED DB: PDB DBREF 5BSU A 1 542 UNP O24146 4CL2_TOBAC 1 542 SEQRES 1 A 542 MET GLU LYS ASP THR LYS GLN VAL ASP ILE ILE PHE ARG SEQRES 2 A 542 SER LYS LEU PRO ASP ILE TYR ILE PRO ASN HIS LEU PRO SEQRES 3 A 542 LEU HIS SER TYR CYS PHE GLU ASN ILE SER GLU PHE SER SEQRES 4 A 542 SER ARG PRO CYS LEU ILE ASN GLY ALA ASN LYS GLN ILE SEQRES 5 A 542 TYR THR TYR ALA ASP VAL GLU LEU ASN SER ARG LYS VAL SEQRES 6 A 542 ALA ALA GLY LEU HIS LYS GLN GLY ILE GLN PRO LYS ASP SEQRES 7 A 542 THR ILE MET ILE LEU LEU PRO ASN SER PRO GLU PHE VAL SEQRES 8 A 542 PHE ALA PHE ILE GLY ALA SER TYR LEU GLY ALA ILE SER SEQRES 9 A 542 THR MET ALA ASN PRO LEU PHE THR PRO ALA GLU VAL VAL SEQRES 10 A 542 LYS GLN ALA LYS ALA SER SER ALA LYS ILE ILE VAL THR SEQRES 11 A 542 GLN ALA CYS HIS VAL ASN LYS VAL LYS ASP TYR ALA PHE SEQRES 12 A 542 GLU ASN ASP VAL LYS ILE ILE CYS ILE ASP SER ALA PRO SEQRES 13 A 542 GLU GLY CYS LEU HIS PHE SER VAL LEU THR GLN ALA ASN SEQRES 14 A 542 GLU HIS ASP ILE PRO GLU VAL GLU ILE GLN PRO ASP ASP SEQRES 15 A 542 VAL VAL ALA LEU PRO TYR SER SER GLY THR THR GLY LEU SEQRES 16 A 542 PRO LYS GLY VAL MET LEU THR HIS LYS GLY LEU VAL THR SEQRES 17 A 542 SER VAL ALA GLN GLN VAL ASP GLY GLU ASN PRO ASN LEU SEQRES 18 A 542 TYR ILE HIS SER GLU ASP VAL MET LEU CYS VAL LEU PRO SEQRES 19 A 542 LEU PHE HIS ILE TYR SER LEU ASN SER VAL LEU LEU CYS SEQRES 20 A 542 GLY LEU ARG VAL GLY ALA ALA ILE LEU ILE MET GLN LYS SEQRES 21 A 542 PHE ASP ILE VAL SER PHE LEU GLU LEU ILE GLN ARG TYR SEQRES 22 A 542 LYS VAL THR ILE GLY PRO PHE VAL PRO PRO ILE VAL LEU SEQRES 23 A 542 ALA ILE ALA LYS SER PRO MET VAL ASP ASP TYR ASP LEU SEQRES 24 A 542 SER SER VAL ARG THR VAL MET SER GLY ALA ALA PRO LEU SEQRES 25 A 542 GLY LYS GLU LEU GLU ASP THR VAL ARG ALA LYS PHE PRO SEQRES 26 A 542 ASN ALA LYS LEU GLY GLN GLY TYR GLY MET THR GLU ALA SEQRES 27 A 542 GLY PRO VAL LEU ALA MET CYS LEU ALA PHE ALA LYS GLU SEQRES 28 A 542 PRO PHE GLU ILE LYS SER GLY ALA CYS GLY THR VAL VAL SEQRES 29 A 542 ARG ASN ALA GLU MET LYS ILE VAL ASP PRO LYS THR GLY SEQRES 30 A 542 ASN SER LEU PRO ARG ASN GLN SER GLY GLU ILE CYS ILE SEQRES 31 A 542 ARG GLY ASP GLN ILE MET LYS GLY TYR LEU ASN ASP PRO SEQRES 32 A 542 GLU ALA THR ALA ARG THR ILE ASP LYS GLU GLY TRP LEU SEQRES 33 A 542 TYR THR GLY ASP ILE GLY TYR ILE ASP ASP ASP ASP GLU SEQRES 34 A 542 LEU PHE ILE VAL ASP ARG LEU LYS GLU LEU ILE LYS TYR SEQRES 35 A 542 LYS GLY PHE GLN VAL ALA PRO ALA GLU LEU GLU ALA LEU SEQRES 36 A 542 LEU LEU ASN HIS PRO ASN ILE SER ASP ALA ALA VAL VAL SEQRES 37 A 542 PRO MET LYS ASP GLU GLN ALA GLY GLU VAL PRO VAL ALA SEQRES 38 A 542 PHE VAL VAL ARG SER ASN GLY SER THR ILE THR GLU ASP SEQRES 39 A 542 GLU VAL LYS ASP PHE ILE SER LYS GLN VAL ILE PHE TYR SEQRES 40 A 542 LYS ARG ILE LYS ARG VAL PHE PHE VAL ASP ALA ILE PRO SEQRES 41 A 542 LYS SER PRO SER GLY LYS ILE LEU ARG LYS ASP LEU ARG SEQRES 42 A 542 ALA LYS LEU ALA ALA GLY LEU PRO ASN HET 4UV A 601 35 HET GOL A 602 6 HET MG A 603 1 HETNAM 4UV 5'-O-[(R)-{[(2E)-3-(3,4-DIOXOCYCLOHEXA-1,5-DIEN-1-YL) HETNAM 2 4UV PROP-2-ENOYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 4UV C19 H18 N5 O10 P FORMUL 3 GOL C3 H8 O3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *499(H2 O) HELIX 1 AA1 PRO A 26 PHE A 32 1 7 HELIX 2 AA2 ASN A 34 PHE A 38 5 5 HELIX 3 AA3 TYR A 55 GLN A 72 1 18 HELIX 4 AA4 SER A 87 LEU A 100 1 14 HELIX 5 AA5 THR A 112 SER A 124 1 13 HELIX 6 AA6 GLN A 131 LYS A 137 5 7 HELIX 7 AA7 VAL A 138 ASP A 146 1 9 HELIX 8 AA8 PHE A 162 GLN A 167 1 6 HELIX 9 AA9 ASN A 169 ILE A 173 5 5 HELIX 10 AB1 HIS A 203 ASP A 215 1 13 HELIX 11 AB2 HIS A 237 VAL A 244 1 8 HELIX 12 AB3 VAL A 244 GLY A 252 1 9 HELIX 13 AB4 ASP A 262 LYS A 274 1 13 HELIX 14 AB5 VAL A 281 SER A 291 1 11 HELIX 15 AB6 PRO A 292 TYR A 297 5 6 HELIX 16 AB7 GLY A 313 PHE A 324 1 12 HELIX 17 AB8 THR A 336 GLY A 339 5 4 HELIX 18 AB9 LEU A 346 ALA A 349 5 4 HELIX 19 AC1 ASP A 402 ILE A 410 1 9 HELIX 20 AC2 ALA A 448 ASN A 458 1 11 HELIX 21 AC3 THR A 492 LYS A 502 1 11 HELIX 22 AC4 ILE A 505 ARG A 509 5 5 HELIX 23 AC5 LEU A 528 LEU A 536 1 9 SHEET 1 AA1 4 ILE A 52 THR A 54 0 SHEET 2 AA1 4 PRO A 42 ASN A 46 -1 N CYS A 43 O TYR A 53 SHEET 3 AA1 4 ALA A 254 ILE A 257 1 O ILE A 257 N ILE A 45 SHEET 4 AA1 4 VAL A 228 CYS A 231 1 N CYS A 231 O LEU A 256 SHEET 1 AA2 5 ILE A 103 MET A 106 0 SHEET 2 AA2 5 THR A 79 ILE A 82 1 N ILE A 82 O THR A 105 SHEET 3 AA2 5 ILE A 127 THR A 130 1 O VAL A 129 N MET A 81 SHEET 4 AA2 5 LYS A 148 CYS A 151 1 O ILE A 150 N ILE A 128 SHEET 5 AA2 5 LEU A 160 HIS A 161 1 O LEU A 160 N CYS A 151 SHEET 1 AA3 3 VAL A 183 ALA A 185 0 SHEET 2 AA3 3 LYS A 197 THR A 202 -1 O LEU A 201 N VAL A 184 SHEET 3 AA3 3 TYR A 188 SER A 189 -1 N SER A 189 O LYS A 197 SHEET 1 AA4 3 VAL A 183 ALA A 185 0 SHEET 2 AA4 3 LYS A 197 THR A 202 -1 O LEU A 201 N VAL A 184 SHEET 3 AA4 3 GLY A 398 TYR A 399 -1 O GLY A 398 N MET A 200 SHEET 1 AA5 5 ILE A 277 PHE A 280 0 SHEET 2 AA5 5 THR A 304 SER A 307 1 O MET A 306 N PHE A 280 SHEET 3 AA5 5 LYS A 328 GLY A 334 1 O LYS A 328 N VAL A 305 SHEET 4 AA5 5 VAL A 341 MET A 344 -1 O LEU A 342 N TYR A 333 SHEET 5 AA5 5 THR A 362 VAL A 363 -1 O THR A 362 N MET A 344 SHEET 1 AA6 4 GLU A 368 VAL A 372 0 SHEET 2 AA6 4 GLY A 386 ARG A 391 -1 O GLU A 387 N VAL A 372 SHEET 3 AA6 4 LEU A 416 ILE A 424 -1 O LEU A 416 N ILE A 390 SHEET 4 AA6 4 LEU A 430 ARG A 435 -1 O ASP A 434 N ILE A 421 SHEET 1 AA7 2 ILE A 440 TYR A 442 0 SHEET 2 AA7 2 PHE A 445 VAL A 447 -1 O PHE A 445 N TYR A 442 SHEET 1 AA8 3 ILE A 462 ASP A 472 0 SHEET 2 AA8 3 GLY A 476 ARG A 485 -1 O PHE A 482 N ALA A 466 SHEET 3 AA8 3 ARG A 512 PHE A 515 1 O PHE A 514 N ALA A 481 LINK O ILE A 178 MG MG A 603 1555 1555 2.27 LINK MG MG A 603 O HOH A 727 1555 1555 2.43 LINK MG MG A 603 O HOH A 750 1555 3555 2.59 LINK MG MG A 603 O HOH A 838 1555 3555 2.48 LINK MG MG A 603 O HOH A1037 1555 1555 2.28 LINK MG MG A 603 O HOH A1074 1555 1555 2.34 CISPEP 1 GLY A 339 PRO A 340 0 6.97 SITE 1 AC1 22 HIS A 237 TYR A 239 SER A 243 MET A 306 SITE 2 AC1 22 ALA A 309 ALA A 310 PRO A 311 GLN A 331 SITE 3 AC1 22 GLY A 332 GLY A 334 MET A 335 THR A 336 SITE 4 AC1 22 VAL A 341 MET A 344 ASP A 420 ARG A 435 SITE 5 AC1 22 LYS A 437 LYS A 441 GLN A 446 HOH A 767 SITE 6 AC1 22 HOH A 835 HOH A 963 SITE 1 AC2 8 ASP A 181 THR A 202 LYS A 204 GLY A 392 SITE 2 AC2 8 ASP A 393 ILE A 395 HOH A 742 HOH A 900 SITE 1 AC3 6 ILE A 178 HOH A 727 HOH A 750 HOH A 838 SITE 2 AC3 6 HOH A1037 HOH A1074 CRYST1 82.348 82.348 181.678 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005504 0.00000