HEADER VIRAL PROTEIN 02-JUN-15 5BSY TITLE CRYSTAL STRUCTURE OF GII.10 P DOMAIN IN COMPLEX WITH LEMON JUICE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTRUDING DOMAIN, RESIDUES 224-538; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_TAXID: 11983; SOURCE 4 STRAIN: GII.10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMBP KEYWDS CITRATE, LEMON, NOROVIRUS, PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.D.KOROMYSLOVA,G.S.HANSMAN REVDAT 2 10-JAN-24 5BSY 1 REMARK REVDAT 1 09-SEP-15 5BSY 0 JRNL AUTH A.D.KOROMYSLOVA,P.A.WHITE,G.S.HANSMAN JRNL TITL TREATMENT OF NOROVIRUS PARTICLES WITH CITRATE. JRNL REF VIROLOGY V. 485 199 2015 JRNL REFN ISSN 0042-6822 JRNL PMID 26295280 JRNL DOI 10.1016/J.VIROL.2015.07.009 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 91720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4624 - 4.9641 0.99 2976 157 0.1634 0.2000 REMARK 3 2 4.9641 - 3.9410 1.00 2953 155 0.1256 0.1713 REMARK 3 3 3.9410 - 3.4431 1.00 2913 153 0.1388 0.1757 REMARK 3 4 3.4431 - 3.1284 1.00 2944 154 0.1517 0.1566 REMARK 3 5 3.1284 - 2.9042 1.00 2933 154 0.1579 0.1797 REMARK 3 6 2.9042 - 2.7330 0.99 2898 153 0.1581 0.1780 REMARK 3 7 2.7330 - 2.5961 1.00 2904 152 0.1602 0.1825 REMARK 3 8 2.5961 - 2.4831 1.00 2918 154 0.1577 0.1912 REMARK 3 9 2.4831 - 2.3876 1.00 2909 153 0.1558 0.1868 REMARK 3 10 2.3876 - 2.3052 1.00 2931 154 0.1501 0.1651 REMARK 3 11 2.3052 - 2.2331 1.00 2916 154 0.1583 0.1851 REMARK 3 12 2.2331 - 2.1693 1.00 2879 152 0.1582 0.1962 REMARK 3 13 2.1693 - 2.1122 0.98 2883 151 0.1562 0.1775 REMARK 3 14 2.1122 - 2.0606 1.00 2922 154 0.1506 0.1760 REMARK 3 15 2.0606 - 2.0138 1.00 2900 153 0.1630 0.1676 REMARK 3 16 2.0138 - 1.9709 1.00 2913 153 0.1638 0.1986 REMARK 3 17 1.9709 - 1.9315 1.00 2872 151 0.1637 0.1984 REMARK 3 18 1.9315 - 1.8951 1.00 2927 154 0.1640 0.2063 REMARK 3 19 1.8951 - 1.8612 1.00 2881 152 0.1682 0.1693 REMARK 3 20 1.8612 - 1.8297 1.00 2908 153 0.1660 0.2101 REMARK 3 21 1.8297 - 1.8001 1.00 2920 154 0.1754 0.2035 REMARK 3 22 1.8001 - 1.7725 0.98 2840 149 0.1885 0.2251 REMARK 3 23 1.7725 - 1.7464 0.99 2888 153 0.1943 0.2073 REMARK 3 24 1.7464 - 1.7218 1.00 2908 153 0.2114 0.2569 REMARK 3 25 1.7218 - 1.6985 1.00 2924 154 0.2131 0.2748 REMARK 3 26 1.6985 - 1.6765 1.00 2867 151 0.2186 0.2445 REMARK 3 27 1.6765 - 1.6555 1.00 2893 152 0.2321 0.2691 REMARK 3 28 1.6555 - 1.6356 1.00 2931 154 0.2498 0.2681 REMARK 3 29 1.6356 - 1.6165 1.00 2886 152 0.2598 0.2541 REMARK 3 30 1.6165 - 1.5984 0.97 2798 147 0.3049 0.3504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5024 REMARK 3 ANGLE : 1.050 6902 REMARK 3 CHIRALITY : 0.046 770 REMARK 3 PLANARITY : 0.006 923 REMARK 3 DIHEDRAL : 11.950 1781 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0529 -0.8064 2.1956 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: 0.1404 REMARK 3 T33: 0.1003 T12: -0.0018 REMARK 3 T13: 0.0139 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.1119 L22: 2.2914 REMARK 3 L33: 2.2111 L12: -0.1088 REMARK 3 L13: 0.1449 L23: -0.0641 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.1486 S13: -0.0510 REMARK 3 S21: -0.1547 S22: 0.0083 S23: -0.0003 REMARK 3 S31: 0.0463 S32: 0.0258 S33: 0.0094 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6281 9.7306 12.9699 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.0901 REMARK 3 T33: 0.1268 T12: -0.0252 REMARK 3 T13: -0.0113 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 4.6198 L22: 1.7791 REMARK 3 L33: 6.5233 L12: -1.9553 REMARK 3 L13: -3.9497 L23: 2.4555 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: -0.0037 S13: 0.2599 REMARK 3 S21: 0.0014 S22: 0.1435 S23: -0.0785 REMARK 3 S31: -0.3315 S32: 0.1354 S33: -0.2060 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 291 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7278 16.3611 24.3848 REMARK 3 T TENSOR REMARK 3 T11: 0.2111 T22: 0.1506 REMARK 3 T33: 0.1595 T12: 0.0378 REMARK 3 T13: -0.0553 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 7.0636 L22: 3.9148 REMARK 3 L33: 4.2665 L12: -0.1201 REMARK 3 L13: -3.4770 L23: -0.0859 REMARK 3 S TENSOR REMARK 3 S11: -0.1439 S12: 0.0961 S13: 0.1751 REMARK 3 S21: 0.1148 S22: 0.1661 S23: 0.3686 REMARK 3 S31: -0.1420 S32: -0.3908 S33: -0.0717 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5274 11.5545 24.0100 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1221 REMARK 3 T33: 0.1585 T12: 0.0450 REMARK 3 T13: 0.0048 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.2446 L22: 1.4564 REMARK 3 L33: 3.7627 L12: -0.2645 REMARK 3 L13: 0.6813 L23: -0.7245 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: -0.1849 S13: 0.1332 REMARK 3 S21: 0.2389 S22: 0.1014 S23: -0.0027 REMARK 3 S31: -0.2917 S32: -0.1795 S33: -0.0230 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 391 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3022 5.5652 6.7108 REMARK 3 T TENSOR REMARK 3 T11: 0.1266 T22: 0.1639 REMARK 3 T33: 0.1357 T12: 0.0076 REMARK 3 T13: -0.0051 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.9845 L22: 1.1735 REMARK 3 L33: 1.3565 L12: 0.0465 REMARK 3 L13: 0.0044 L23: -0.0472 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: 0.1654 S13: 0.0677 REMARK 3 S21: -0.1239 S22: 0.1147 S23: 0.0992 REMARK 3 S31: -0.0932 S32: -0.1508 S33: -0.0638 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 456 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3536 -3.2013 -3.6153 REMARK 3 T TENSOR REMARK 3 T11: 0.1998 T22: 0.2409 REMARK 3 T33: 0.1484 T12: 0.0211 REMARK 3 T13: 0.0354 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 2.7384 L22: 1.4424 REMARK 3 L33: 2.2144 L12: 0.8785 REMARK 3 L13: 0.5153 L23: 0.0942 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: 0.3844 S13: -0.1835 REMARK 3 S21: -0.2093 S22: 0.0411 S23: -0.1278 REMARK 3 S31: 0.1470 S32: 0.2332 S33: -0.0327 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 522 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8430 -3.1774 -12.9609 REMARK 3 T TENSOR REMARK 3 T11: 0.3574 T22: 0.3546 REMARK 3 T33: 0.2033 T12: 0.0265 REMARK 3 T13: 0.0777 T23: -0.1037 REMARK 3 L TENSOR REMARK 3 L11: 7.5201 L22: 1.7330 REMARK 3 L33: 5.6317 L12: 2.8190 REMARK 3 L13: 0.4454 L23: -1.7707 REMARK 3 S TENSOR REMARK 3 S11: -0.2416 S12: 0.7662 S13: -0.1459 REMARK 3 S21: -0.3604 S22: 0.1210 S23: 0.1260 REMARK 3 S31: -0.0510 S32: 0.2018 S33: 0.1235 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6590 -8.6033 24.5405 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.1217 REMARK 3 T33: 0.1518 T12: 0.0163 REMARK 3 T13: -0.0066 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.8108 L22: 1.2853 REMARK 3 L33: 0.7162 L12: 0.7313 REMARK 3 L13: 0.3663 L23: 0.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.0648 S12: -0.1240 S13: -0.0650 REMARK 3 S21: 0.1202 S22: -0.0084 S23: -0.0277 REMARK 3 S31: 0.0592 S32: 0.0078 S33: -0.0490 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 308 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4210 -14.4535 26.0443 REMARK 3 T TENSOR REMARK 3 T11: 0.1537 T22: 0.1257 REMARK 3 T33: 0.1778 T12: -0.0220 REMARK 3 T13: 0.0083 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 2.0972 L22: 1.1584 REMARK 3 L33: 1.2271 L12: -0.3823 REMARK 3 L13: 0.6014 L23: -0.0787 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: -0.0873 S13: -0.2920 REMARK 3 S21: 0.0245 S22: 0.0659 S23: 0.1145 REMARK 3 S31: 0.1465 S32: -0.1160 S33: -0.0900 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 427 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3675 -0.9847 23.5098 REMARK 3 T TENSOR REMARK 3 T11: 0.1582 T22: 0.1886 REMARK 3 T33: 0.2332 T12: -0.0104 REMARK 3 T13: -0.0133 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.2408 L22: 0.9803 REMARK 3 L33: 1.3862 L12: -0.2798 REMARK 3 L13: -0.0405 L23: 0.2783 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.0601 S13: 0.0898 REMARK 3 S21: 0.0137 S22: 0.0786 S23: -0.2843 REMARK 3 S31: -0.1012 S32: 0.2725 S33: -0.1050 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2804 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9845 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91761 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 43.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 15.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ONU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM NITRATE, BIS-TRIS PROPANE, REMARK 280 PEG3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.87500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 224 REMARK 465 VAL A 346 REMARK 465 PRO A 347 REMARK 465 GLY A 348 REMARK 465 GLU A 349 REMARK 465 SER B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 ASN A 344 CG OD1 ND2 REMARK 470 THR A 345 OG1 CG2 REMARK 470 ASN A 351 CG OD1 ND2 REMARK 470 ASN A 405 CG OD1 ND2 REMARK 470 VAL A 433 CG1 CG2 REMARK 470 GLU A 489 CG CD OE1 OE2 REMARK 470 ARG A 492 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 524 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 531 CG CD OE1 NE2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 GLN B 292 CG CD OE1 NE2 REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 433 CG1 CG2 REMARK 470 GLU B 489 CG CD OE1 OE2 REMARK 470 ARG B 492 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 531 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 846 O HOH A 972 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 252 78.78 -152.84 REMARK 500 GLN A 260 46.62 -149.21 REMARK 500 GLU A 382 121.54 -34.03 REMARK 500 THR A 383 144.33 -176.66 REMARK 500 VAL A 529 -153.01 -124.62 REMARK 500 ASN B 252 78.38 -152.25 REMARK 500 GLN B 260 46.40 -149.33 REMARK 500 VAL B 529 -152.97 -124.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1022 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B1046 DISTANCE = 5.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 B 603 DBREF 5BSY A 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 DBREF 5BSY B 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 SEQRES 1 A 315 SER LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU SEQRES 2 A 315 LEU THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU SEQRES 3 A 315 TYR THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN SEQRES 4 A 315 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 A 315 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 A 315 LYS VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR SEQRES 7 A 315 HIS TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO SEQRES 8 A 315 PHE ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 A 315 PRO ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN SEQRES 10 A 315 ARG ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO SEQRES 11 A 315 ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER SEQRES 12 A 315 PRO LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER SEQRES 13 A 315 THR TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR SEQRES 14 A 315 LYS PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SEQRES 15 A 315 SER HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY SEQRES 16 A 315 ALA LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA SEQRES 17 A 315 PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER SEQRES 18 A 315 PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE SEQRES 19 A 315 ASP CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR SEQRES 20 A 315 GLN GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL SEQRES 21 A 315 ARG TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU SEQRES 22 A 315 ALA LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG SEQRES 23 A 315 ASN SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR SEQRES 24 A 315 PHE ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU SEQRES 25 A 315 ALA PRO MET SEQRES 1 B 315 SER LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU SEQRES 2 B 315 LEU THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU SEQRES 3 B 315 TYR THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN SEQRES 4 B 315 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 B 315 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 B 315 LYS VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR SEQRES 7 B 315 HIS TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO SEQRES 8 B 315 PHE ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 B 315 PRO ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN SEQRES 10 B 315 ARG ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO SEQRES 11 B 315 ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER SEQRES 12 B 315 PRO LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER SEQRES 13 B 315 THR TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR SEQRES 14 B 315 LYS PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SEQRES 15 B 315 SER HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY SEQRES 16 B 315 ALA LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA SEQRES 17 B 315 PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER SEQRES 18 B 315 PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE SEQRES 19 B 315 ASP CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR SEQRES 20 B 315 GLN GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL SEQRES 21 B 315 ARG TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU SEQRES 22 B 315 ALA LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG SEQRES 23 B 315 ASN SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR SEQRES 24 B 315 PHE ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU SEQRES 25 B 315 ALA PRO MET HET EDO A 601 4 HET EDO A 602 4 HET FLC A 603 13 HET NO3 A 604 4 HET EDO B 601 4 HET EDO B 602 4 HET NO3 B 603 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM FLC CITRATE ANION HETNAM NO3 NITRATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 5 FLC C6 H5 O7 3- FORMUL 6 NO3 2(N O3 1-) FORMUL 10 HOH *668(H2 O) HELIX 1 AA1 THR A 233 LEU A 237 5 5 HELIX 2 AA2 LEU A 279 ILE A 283 5 5 HELIX 3 AA3 THR A 370 LEU A 373 5 4 HELIX 4 AA4 ASP A 403 HIS A 407 5 5 HELIX 5 AA5 PRO A 462 SER A 473 1 12 HELIX 6 AA6 THR B 233 LEU B 237 5 5 HELIX 7 AA7 LEU B 279 ILE B 283 5 5 HELIX 8 AA8 VAL B 346 GLY B 350 5 5 HELIX 9 AA9 THR B 370 LEU B 373 5 4 HELIX 10 AB1 ASP B 403 HIS B 407 5 5 HELIX 11 AB2 PRO B 462 SER B 473 1 12 SHEET 1 AA1 4 ALA A 456 CYS A 459 0 SHEET 2 AA1 4 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA1 4 VAL A 248 THR A 251 -1 N VAL A 248 O ARG A 443 SHEET 4 AA1 4 GLY A 513 VAL A 515 -1 O GLY A 513 N THR A 251 SHEET 1 AA2 6 ALA A 456 CYS A 459 0 SHEET 2 AA2 6 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA2 6 PHE A 504 ALA A 508 -1 O VAL A 507 N CYS A 438 SHEET 4 AA2 6 THR A 493 HIS A 500 -1 N HIS A 500 O PHE A 504 SHEET 5 AA2 6 VAL A 480 VAL A 486 -1 N ALA A 481 O LEU A 499 SHEET 6 AA2 6 TYR A 522 VAL A 529 -1 O SER A 527 N LEU A 482 SHEET 1 AA3 8 GLY B 450 TYR B 452 0 SHEET 2 AA3 8 ALA A 354 ALA A 363 -1 N ASN A 355 O GLY B 451 SHEET 3 AA3 8 ASN A 375 THR A 380 -1 O SER A 379 N VAL A 361 SHEET 4 AA3 8 THR A 301 VAL A 307 -1 N THR A 301 O THR A 380 SHEET 5 AA3 8 PHE A 286 VAL A 294 -1 N THR A 291 O ASN A 304 SHEET 6 AA3 8 PRO A 391 LEU A 399 -1 O THR A 392 N GLY A 288 SHEET 7 AA3 8 GLN A 333 ARG A 341 -1 N VAL A 337 O THR A 395 SHEET 8 AA3 8 ALA A 354 ALA A 363 -1 O ILE A 362 N ILE A 334 SHEET 1 AA4 8 GLY A 450 TYR A 452 0 SHEET 2 AA4 8 ALA B 354 ALA B 363 -1 O ASN B 355 N GLY A 451 SHEET 3 AA4 8 ASN B 375 THR B 380 -1 O SER B 379 N VAL B 361 SHEET 4 AA4 8 THR B 301 VAL B 307 -1 N MET B 305 O ILE B 376 SHEET 5 AA4 8 PHE B 286 GLN B 295 -1 N VAL B 294 O HIS B 302 SHEET 6 AA4 8 PRO B 391 LEU B 399 -1 O THR B 392 N GLY B 288 SHEET 7 AA4 8 GLN B 333 ARG B 341 -1 N TYR B 335 O VAL B 397 SHEET 8 AA4 8 ALA B 354 ALA B 363 -1 O ILE B 362 N ILE B 334 SHEET 1 AA5 4 ALA B 456 CYS B 459 0 SHEET 2 AA5 4 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA5 4 VAL B 248 THR B 251 -1 N TYR B 250 O PHE B 441 SHEET 4 AA5 4 GLY B 513 VAL B 515 -1 O GLY B 513 N THR B 251 SHEET 1 AA6 6 ALA B 456 CYS B 459 0 SHEET 2 AA6 6 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA6 6 PHE B 504 ALA B 508 -1 O VAL B 507 N CYS B 438 SHEET 4 AA6 6 THR B 493 HIS B 500 -1 N HIS B 500 O PHE B 504 SHEET 5 AA6 6 VAL B 480 VAL B 486 -1 N ALA B 481 O LEU B 499 SHEET 6 AA6 6 TYR B 522 VAL B 529 -1 O SER B 527 N LEU B 482 SITE 1 AC1 5 TRP A 381 HOH A 919 HOH A 923 THR B 534 SITE 2 AC1 5 HOH B 749 SITE 1 AC2 3 ARG A 299 THR A 380 TRP A 381 SITE 1 AC3 10 ASN A 342 ALA A 354 ASN A 355 ARG A 356 SITE 2 AC3 10 ASP A 385 SER A 387 HOH A 702 HOH A 722 SITE 3 AC3 10 HOH A 786 GLY B 451 SITE 1 AC4 3 GLN A 471 GLU B 464 HIS B 468 SITE 1 AC5 7 ASN B 309 LEU B 310 ASN B 311 LEU B 325 SITE 2 AC5 7 HOH B 781 HOH B 875 HOH B 931 SITE 1 AC6 8 PRO A 245 LEU B 279 THR B 281 GLY B 282 SITE 2 AC6 8 ARG B 287 LYS B 393 HOH B 835 HOH B 886 SITE 1 AC7 7 HIS B 302 VAL B 361 ALA B 363 GLN B 377 SITE 2 AC7 7 PHE B 378 SER B 379 HOH B 831 CRYST1 65.080 79.750 69.470 90.00 100.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015366 0.000000 0.002983 0.00000 SCALE2 0.000000 0.012539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014663 0.00000