HEADER FLUORESCENT PROTEIN 02-JUN-15 5BT0 TITLE SWITCHING GFP FLUORESCENCE USING GENETICALLY ENCODED PHENYL AZIDE TITLE 2 CHEMISTRY THROUGH TWO DIFFERENT NON-NATIVE POST-TRANSLATIONAL TITLE 3 MODIFICATIONS ROUTES AT THE SAME POSITION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SYNTHETIC BIOLOGY, PHOTOCONTROL, OPTOGENETICS, UNNATURAL AMINO ACIDS, KEYWDS 2 PROTEIN FLUORESCENCE, SFGFP, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.HARTLEY,H.L.WORTHY,S.C.REDDINGTON,P.J.RIZKALLAH,D.D.JONES REVDAT 3 10-MAY-17 5BT0 1 JRNL REVDAT 2 19-OCT-16 5BT0 1 JRNL REVDAT 1 13-JUL-16 5BT0 0 JRNL AUTH A.M.HARTLEY,H.L.WORTHY,S.C.REDDINGTON,P.J.RIZKALLAH, JRNL AUTH 2 D.D.JONES JRNL TITL MOLECULAR BASIS FOR FUNCTIONAL SWITCHING OF GFP BY TWO JRNL TITL 2 DISPARATE NON-NATIVE POST-TRANSLATIONAL MODIFICATIONS OF A JRNL TITL 3 PHENYL AZIDE REACTION HANDLE. JRNL REF CHEM SCI V. 7 6484 2016 JRNL REFN ISSN 2041-6520 JRNL PMID 28451106 JRNL DOI 10.1039/C6SC00944A REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2133 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2907 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.399 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3811 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3567 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5155 ; 2.029 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8234 ; 1.252 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 7.652 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;34.254 ;25.028 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 652 ;15.926 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.473 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 561 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4293 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 875 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1848 ; 1.891 ; 1.753 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1847 ; 1.817 ; 1.750 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2307 ; 2.886 ; 2.603 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 64 B 2 64 3142 0.110 0.050 REMARK 3 2 A 68 234 B 68 234 8819 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9930 31.4260 16.8740 REMARK 3 T TENSOR REMARK 3 T11: 0.1311 T22: 0.0370 REMARK 3 T33: 0.1062 T12: 0.0433 REMARK 3 T13: -0.0889 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.8789 L22: 4.0789 REMARK 3 L33: 1.7918 L12: 0.7914 REMARK 3 L13: 0.5969 L23: -0.6455 REMARK 3 S TENSOR REMARK 3 S11: 0.2688 S12: 0.1947 S13: 0.0449 REMARK 3 S21: -0.3819 S22: -0.2378 S23: 0.3194 REMARK 3 S31: -0.0007 S32: 0.1444 S33: -0.0309 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 231 REMARK 3 ORIGIN FOR THE GROUP (A): 58.2420 41.6260 23.6910 REMARK 3 T TENSOR REMARK 3 T11: 0.0084 T22: 0.0564 REMARK 3 T33: 0.1983 T12: -0.0015 REMARK 3 T13: -0.0120 T23: 0.0951 REMARK 3 L TENSOR REMARK 3 L11: 4.0851 L22: 2.3356 REMARK 3 L33: 2.2394 L12: 1.2880 REMARK 3 L13: -0.7064 L23: -0.6597 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.0651 S13: -0.1968 REMARK 3 S21: -0.0637 S22: -0.1362 S23: -0.2905 REMARK 3 S31: 0.0575 S32: -0.0257 S33: 0.0769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5BT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000209054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42237 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 42.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 0.75200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MMT, 2.5 M (NH4)2SO4, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.61500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 67.80000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 67.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.92250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 67.80000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 67.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.30750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 67.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.80000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.92250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 67.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.80000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.30750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.61500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 574 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 568 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB GLU A 142 O HOH A 559 1.87 REMARK 500 OE2 GLU B 17 NH1 ARG B 122 2.03 REMARK 500 NH2 ARG B 30 O HOH B 401 2.13 REMARK 500 O HOH A 566 O HOH B 558 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4 SO4 B 302 O4 SO4 B 302 7555 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 222 CD GLU A 222 OE1 0.090 REMARK 500 GLU B 222 CD GLU B 222 OE1 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 210 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG B 73 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU B 178 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP B 210 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -154.36 -150.44 REMARK 500 PHE A 145 -157.06 -147.41 REMARK 500 LYS A 158 -151.90 -137.58 REMARK 500 ASP B 103 -156.16 -149.73 REMARK 500 PHE B 145 -154.69 -143.20 REMARK 500 MET B 233 95.71 80.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 2 LYS A 3 148.74 REMARK 500 GLY B 232 MET B 233 133.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues HOX A 148 REMARK 800 through ASN A 149 bound to SER A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues HOX B 148 REMARK 800 through ASN B 149 bound to SER B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU B 64 and CRO B REMARK 800 66 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CRO B 66 and VAL B REMARK 800 68 DBREF1 5BT0 A 3 234 UNP A0A059PIQ0_AEQVI DBREF2 5BT0 A A0A059PIQ0 3 234 DBREF1 5BT0 B 3 234 UNP A0A059PIQ0_AEQVI DBREF2 5BT0 B A0A059PIQ0 3 234 SEQADV 5BT0 SER A 2 UNP A0A059PIQ EXPRESSION TAG SEQADV 5BT0 ARG A 30 UNP A0A059PIQ SER 30 CONFLICT SEQADV 5BT0 CRO A UNP A0A059PIQ THR 65 CHROMOPHORE SEQADV 5BT0 CRO A UNP A0A059PIQ TYR 66 CHROMOPHORE SEQADV 5BT0 CRO A 66 UNP A0A059PIQ GLY 67 CHROMOPHORE SEQADV 5BT0 SER A 72 UNP A0A059PIQ ALA 72 CONFLICT SEQADV 5BT0 ARG A 80 UNP A0A059PIQ GLN 80 CONFLICT SEQADV 5BT0 HOX A 148 UNP A0A059PIQ HIS 148 CONFLICT SEQADV 5BT0 VAL A 206 UNP A0A059PIQ ALA 206 CONFLICT SEQADV 5BT0 SER B 2 UNP A0A059PIQ EXPRESSION TAG SEQADV 5BT0 ARG B 30 UNP A0A059PIQ SER 30 CONFLICT SEQADV 5BT0 CRO B UNP A0A059PIQ THR 65 CHROMOPHORE SEQADV 5BT0 CRO B UNP A0A059PIQ TYR 66 CHROMOPHORE SEQADV 5BT0 CRO B 66 UNP A0A059PIQ GLY 67 CHROMOPHORE SEQADV 5BT0 SER B 72 UNP A0A059PIQ ALA 72 CONFLICT SEQADV 5BT0 ARG B 80 UNP A0A059PIQ GLN 80 CONFLICT SEQADV 5BT0 HOX B 148 UNP A0A059PIQ HIS 148 CONFLICT SEQADV 5BT0 VAL B 206 UNP A0A059PIQ ALA 206 CONFLICT SEQRES 1 A 231 SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO ILE SEQRES 2 A 231 LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS PHE SEQRES 3 A 231 SER VAL ARG GLY GLU GLY GLU GLY ASP ALA THR ASN GLY SEQRES 4 A 231 LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS LEU SEQRES 5 A 231 PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU CRO VAL SEQRES 6 A 231 GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG HIS SEQRES 7 A 231 ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL GLN SEQRES 8 A 231 GLU ARG THR ILE SER PHE LYS ASP ASP GLY THR TYR LYS SEQRES 9 A 231 THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU VAL SEQRES 10 A 231 ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU ASP SEQRES 11 A 231 GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN PHE ASN SEQRES 12 A 231 SER HOX ASN VAL TYR ILE THR ALA ASP LYS GLN LYS ASN SEQRES 13 A 231 GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN VAL GLU SEQRES 14 A 231 ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN SEQRES 15 A 231 THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN SEQRES 16 A 231 HIS TYR LEU SER THR GLN SER VAL LEU SER LYS ASP PRO SEQRES 17 A 231 ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE VAL SEQRES 18 A 231 THR ALA ALA GLY ILE THR HIS GLY MET ASP SEQRES 1 B 231 SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO ILE SEQRES 2 B 231 LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS PHE SEQRES 3 B 231 SER VAL ARG GLY GLU GLY GLU GLY ASP ALA THR ASN GLY SEQRES 4 B 231 LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS LEU SEQRES 5 B 231 PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU CRO VAL SEQRES 6 B 231 GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG HIS SEQRES 7 B 231 ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL GLN SEQRES 8 B 231 GLU ARG THR ILE SER PHE LYS ASP ASP GLY THR TYR LYS SEQRES 9 B 231 THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU VAL SEQRES 10 B 231 ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU ASP SEQRES 11 B 231 GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN PHE ASN SEQRES 12 B 231 SER HOX ASN VAL TYR ILE THR ALA ASP LYS GLN LYS ASN SEQRES 13 B 231 GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN VAL GLU SEQRES 14 B 231 ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN SEQRES 15 B 231 THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN SEQRES 16 B 231 HIS TYR LEU SER THR GLN SER VAL LEU SER LYS ASP PRO SEQRES 17 B 231 ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE VAL SEQRES 18 B 231 THR ALA ALA GLY ILE THR HIS GLY MET ASP HET CRO A 66 22 HET HOX A 148 12 HET CRO B 66 22 HET HOX B 148 12 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM HOX 4-AMINO-L-PHENYLALANINE HETNAM SO4 SULFATE ION HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO 2(C15 H17 N3 O5) FORMUL 1 HOX 2(C9 H12 N2 O2) FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *345(H2 O) HELIX 1 AA1 GLY A 4 THR A 9 5 6 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 SER A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 GLY B 4 THR B 9 5 6 HELIX 7 AA7 ALA B 37 ASN B 39 5 3 HELIX 8 AA8 PRO B 56 VAL B 61 5 6 HELIX 9 AA9 VAL B 68 SER B 72 5 5 HELIX 10 AB1 PRO B 75 HIS B 81 5 7 HELIX 11 AB2 ASP B 82 ALA B 87 1 6 HELIX 12 AB3 LYS B 156 ASN B 159 5 4 SHEET 1 AA112 VAL A 12 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O MET A 218 N PHE A 46 SHEET 5 AA112 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 AA112 SER A 147 ALA A 154 -1 N HOX A 148 O THR A 203 SHEET 7 AA112 ILE A 161 ASN A 170 -1 O LYS A 162 N THR A 153 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O GLN A 183 N ALA A 163 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 AA112 THR A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 12 VAL A 22 1 N ASP A 21 O GLY A 127 SHEET 1 AA212 VAL B 12 VAL B 22 0 SHEET 2 AA212 HIS B 25 ASP B 36 -1 O PHE B 27 N GLY B 20 SHEET 3 AA212 LYS B 41 CYS B 48 -1 O LYS B 41 N ASP B 36 SHEET 4 AA212 HIS B 217 ALA B 227 -1 O LEU B 220 N LEU B 44 SHEET 5 AA212 HIS B 199 SER B 208 -1 N SER B 202 O THR B 225 SHEET 6 AA212 SER B 147 ASP B 155 -1 N HOX B 148 O THR B 203 SHEET 7 AA212 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 AA212 VAL B 176 PRO B 187 -1 O GLN B 183 N ALA B 163 SHEET 9 AA212 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 AA212 THR B 105 GLU B 115 -1 O TYR B 106 N ILE B 98 SHEET 11 AA212 THR B 118 ILE B 128 -1 O VAL B 120 N LYS B 113 SHEET 12 AA212 VAL B 12 VAL B 22 1 N ASP B 21 O GLY B 127 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.61 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.45 LINK C SER A 147 N HOX A 148 1555 1555 1.30 LINK C HOX A 148 N ASN A 149 1555 1555 1.32 LINK C LEU B 64 N1 CRO B 66 1555 1555 1.56 LINK C3 CRO B 66 N VAL B 68 1555 1555 1.58 LINK C SER B 147 N HOX B 148 1555 1555 1.34 LINK C HOX B 148 N ASN B 149 1555 1555 1.33 CISPEP 1 MET A 88 PRO A 89 0 9.02 CISPEP 2 MET B 88 PRO B 89 0 9.34 SITE 1 AC1 7 GLU A 95 THR A 97 TYR A 182 GLN A 183 SITE 2 AC1 7 GLN A 184 HOH A 466 HOH A 512 SITE 1 AC2 4 GLY A 24 HIS A 25 LYS A 26 LYS B 214 SITE 1 AC3 5 LYS A 107 THR A 108 ARG A 109 GLU A 124 SITE 2 AC3 5 LYS A 126 SITE 1 AC4 5 GLU B 95 ARG B 96 THR B 97 TYR B 182 SITE 2 AC4 5 GLN B 184 SITE 1 AC5 1 LYS B 131 SITE 1 AC6 3 SER A 147 HIS B 77 THR B 230 SITE 1 AC7 16 CRO A 66 ASN A 146 SER A 147 VAL A 150 SITE 2 AC7 16 LYS A 166 ARG A 168 TYR A 200 LEU A 201 SITE 3 AC7 16 SER A 202 THR A 203 HOH A 419 HOH A 444 SITE 4 AC7 16 HOH A 531 GLY B 228 HIS B 231 HOH B 488 SITE 1 AC8 16 GLY A 228 THR A 230 HOH A 500 CRO B 66 SITE 2 AC8 16 ASN B 146 SER B 147 VAL B 150 LYS B 166 SITE 3 AC8 16 ARG B 168 TYR B 200 LEU B 201 SER B 202 SITE 4 AC8 16 THR B 203 HOH B 406 HOH B 481 HOH B 537 SITE 1 AC9 18 LEU B 44 LEU B 60 VAL B 61 THR B 62 SITE 2 AC9 18 THR B 63 VAL B 68 GLN B 69 GLN B 94 SITE 3 AC9 18 ARG B 96 VAL B 112 ASN B 121 PHE B 145 SITE 4 AC9 18 HOX B 148 VAL B 150 THR B 203 GLU B 222 SITE 5 AC9 18 HOH B 434 HOH B 439 SITE 1 AD1 21 LEU B 42 LEU B 44 VAL B 61 THR B 62 SITE 2 AD1 21 THR B 63 LEU B 64 GLN B 69 CYS B 70 SITE 3 AD1 21 PHE B 71 GLN B 94 ARG B 96 VAL B 112 SITE 4 AD1 21 ASN B 121 PHE B 145 HOX B 148 VAL B 150 SITE 5 AD1 21 THR B 203 GLU B 222 HOH B 434 HOH B 439 SITE 6 AD1 21 HOH B 532 CRYST1 135.600 135.600 69.230 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007375 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014445 0.00000