HEADER UNKNOWN FUNCTION 03-JUN-15 5BU1 TITLE STRUCTURE OF THE TRUNCATED C-TERMINAL DOMAIN OF LPG1496 FROM TITLE 2 LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPG1496; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 293-580; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA ATCC SOURCE 3 43290; SOURCE 4 ORGANISM_TAXID: 933093; SOURCE 5 GENE: LP12_1434; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIAL EFFECTOR, NUCLEOTIDE-BINDING, STRUCTURAL GENOMICS, KEYWDS 2 MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS INITIATIVE, BSGI, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.WONG,G.KOZLOV,K.GEHRING,MONTREAL-KINGSTON BACTERIAL STRUCTURAL AUTHOR 2 GENOMICS INITIATIVE (BSGI) REVDAT 6 27-SEP-23 5BU1 1 REMARK REVDAT 5 08-JAN-20 5BU1 1 REMARK REVDAT 4 20-SEP-17 5BU1 1 JRNL REMARK REVDAT 3 21-OCT-15 5BU1 1 JRNL REVDAT 2 02-SEP-15 5BU1 1 JRNL REVDAT 1 26-AUG-15 5BU1 0 JRNL AUTH K.WONG,G.KOZLOV,Y.ZHANG,K.GEHRING JRNL TITL STRUCTURE OF THE LEGIONELLA EFFECTOR, LPG1496, SUGGESTS A JRNL TITL 2 ROLE IN NUCLEOTIDE METABOLISM. JRNL REF J.BIOL.CHEM. V. 290 24727 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26294765 JRNL DOI 10.1074/JBC.M115.671263 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 42595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2264 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3066 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.337 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2382 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3237 ; 2.591 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1825 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1157 ; 1.592 ; 1.404 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1450 ; 2.100 ; 2.103 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1225 ; 3.288 ; 1.702 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3739 ; 6.698 ;16.619 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42595 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 34.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5BU0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M SODIUM MALONATE, 0.1 M HEPES, REMARK 280 0.5% (V/V) JEFFAMINE ED-2001, PH 7.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.44400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.49800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.73300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.49800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.44400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.73300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 292 REMARK 465 GLU A 293 REMARK 465 ILE A 294 REMARK 465 GLU A 295 REMARK 465 LYS A 296 REMARK 465 ASN A 297 REMARK 465 GLU A 582 REMARK 465 HIS A 583 REMARK 465 HIS A 584 REMARK 465 HIS A 585 REMARK 465 HIS A 586 REMARK 465 HIS A 587 REMARK 465 HIS A 588 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 298 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD GLU A 417 O HOH A 703 1.80 REMARK 500 OD1 ASP A 310 O HOH A 701 1.94 REMARK 500 NH1 ARG A 363 O HOH A 702 1.97 REMARK 500 OE1 GLU A 417 O HOH A 703 2.08 REMARK 500 OE2 GLU A 417 O HOH A 703 2.10 REMARK 500 NH2 ARG A 363 O HOH A 702 2.16 REMARK 500 O HOH A 709 O HOH A 888 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 803 O HOH A 1013 2554 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 363 CD ARG A 363 NE -0.140 REMARK 500 ARG A 363 CZ ARG A 363 NH2 -0.145 REMARK 500 GLN A 561 CD GLN A 561 NE2 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 363 CD - NE - CZ ANGL. DEV. = -24.6 DEGREES REMARK 500 ARG A 363 NH1 - CZ - NH2 ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 363 NE - CZ - NH1 ANGL. DEV. = -18.1 DEGREES REMARK 500 ARG A 363 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 373 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 416 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 PHE A 448 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR A 480 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 505 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 510 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LYS A 523 CD - CE - NZ ANGL. DEV. = -15.6 DEGREES REMARK 500 ARG A 528 CD - NE - CZ ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 528 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 528 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 541 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 545 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 562 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 316 -60.76 -136.88 REMARK 500 ARG A 363 51.76 38.70 REMARK 500 HIS A 366 53.98 -147.51 REMARK 500 LEU A 529 41.62 -93.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 416 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BTX RELATED DB: PDB REMARK 900 RELATED ID: 5BTZ RELATED DB: PDB REMARK 900 RELATED ID: 5BU2 RELATED DB: PDB REMARK 900 RELATED ID: 5BU0 RELATED DB: PDB DBREF 5BU1 A 293 580 UNP G8UY02 G8UY02_LEGPN 293 580 SEQADV 5BU1 MET A 292 UNP G8UY02 INITIATING METHIONINE SEQADV 5BU1 LEU A 581 UNP G8UY02 EXPRESSION TAG SEQADV 5BU1 GLU A 582 UNP G8UY02 EXPRESSION TAG SEQADV 5BU1 HIS A 583 UNP G8UY02 EXPRESSION TAG SEQADV 5BU1 HIS A 584 UNP G8UY02 EXPRESSION TAG SEQADV 5BU1 HIS A 585 UNP G8UY02 EXPRESSION TAG SEQADV 5BU1 HIS A 586 UNP G8UY02 EXPRESSION TAG SEQADV 5BU1 HIS A 587 UNP G8UY02 EXPRESSION TAG SEQADV 5BU1 HIS A 588 UNP G8UY02 EXPRESSION TAG SEQRES 1 A 297 MET GLU ILE GLU LYS ASN ASP TYR LEU LEU SER ALA ASN SEQRES 2 A 297 GLY SER LYS ALA ILE ASP PHE VAL TRP SER ASN PHE LEU SEQRES 3 A 297 LYS HIS PRO TYR ASN PRO LYS LEU LYS GLN PRO ASP ALA SEQRES 4 A 297 ASN VAL LYS ALA ALA TRP GLU LYS HIS ALA ASP TRP GLU SEQRES 5 A 297 HIS TRP SER ASN MET GLY GLN ASP TRP SER LEU ASN THR SEQRES 6 A 297 PRO SER GLY LEU VAL PRO ARG PRO ASN HIS GLY ILE ALA SEQRES 7 A 297 HIS THR LEU ARG VAL ALA GLN LEU VAL PRO VAL ILE ALA SEQRES 8 A 297 GLU PHE LEU LYS ALA TYR SER GLY ASP PRO LYS PHE GLN SEQRES 9 A 297 LYS LEU THR GLN LYS GLU ILE GLN LYS ALA GLN TYR MET SEQRES 10 A 297 MET LEU PHE SER VAL ILE GLY ARG GLU ASN ASP MET SER SEQRES 11 A 297 TRP THR ASP ALA ASN HIS TYR GLN GLN ALA PHE LYS GLU SEQRES 12 A 297 ALA TYR ASN GLY GLN TYR SER LYS HIS ILE TYR ALA THR SEQRES 13 A 297 PHE LYS GLU ASN ALA GLN LYS GLY PHE LEU ASN HIS VAL SEQRES 14 A 297 VAL THR ASN LYS SER SER LEU ILE PRO SER LEU PHE SER SEQRES 15 A 297 ASP GLU SER GLU LEU GLN TYR TRP ALA GLU ALA LEU ASP SEQRES 16 A 297 THR GLY LYS PRO GLY ILE SER SER ALA SER GLY ILE LEU SEQRES 17 A 297 MET ALA LEU ALA HIS ASP LEU ASP LEU MET ARG CYS TYR SEQRES 18 A 297 ASP LYS GLY LYS PHE ASN SER LEU LYS MET LYS ASP LEU SEQRES 19 A 297 VAL ALA ARG LEU GLY GLY ASN GLU ASP ALA ALA LYS LYS SEQRES 20 A 297 LEU ALA ASP TYR ALA HIS ASP LEU ILE VAL ALA THR GLY SEQRES 21 A 297 ASP ARG CYS MET GLY TYR GLY VAL THR GLN ASP TYR ASN SEQRES 22 A 297 TYR SER LEU PHE GLY LYS CYS SER LEU ASP PRO ASN GLU SEQRES 23 A 297 CYS LEU LYS LEU GLU HIS HIS HIS HIS HIS HIS HET MLI A 601 7 HETNAM MLI MALONATE ION FORMUL 2 MLI C3 H2 O4 2- FORMUL 3 HOH *414(H2 O) HELIX 1 AA1 ASP A 298 LEU A 301 5 4 HELIX 2 AA2 SER A 302 PHE A 316 1 15 HELIX 3 AA3 ASN A 322 LYS A 326 5 5 HELIX 4 AA4 ASP A 329 LYS A 338 1 10 HELIX 5 AA5 HIS A 344 GLN A 350 5 7 HELIX 6 AA6 GLY A 367 SER A 389 1 23 HELIX 7 AA7 ASP A 391 LYS A 396 1 6 HELIX 8 AA8 THR A 398 LEU A 410 1 13 HELIX 9 AA9 SER A 421 TYR A 436 1 16 HELIX 10 AB1 HIS A 443 VAL A 461 1 19 HELIX 11 AB2 ASN A 463 ILE A 468 1 6 HELIX 12 AB3 ASP A 474 LEU A 485 1 12 HELIX 13 AB4 SER A 494 LEU A 508 1 15 HELIX 14 AB5 MET A 509 CYS A 511 5 3 HELIX 15 AB6 ASP A 513 LYS A 521 1 9 HELIX 16 AB7 LYS A 521 LEU A 529 1 9 HELIX 17 AB8 ASN A 532 THR A 550 1 19 HELIX 18 AB9 ASN A 564 LEU A 573 1 10 HELIX 19 AC1 ASP A 574 LEU A 581 1 8 SHEET 1 AA1 2 SER A 353 THR A 356 0 SHEET 2 AA1 2 GLY A 359 PRO A 362 -1 O VAL A 361 N LEU A 354 CISPEP 1 ILE A 468 PRO A 469 0 12.44 SITE 1 AC1 5 LYS A 393 TYR A 440 SER A 493 ARG A 528 SITE 2 AC1 5 HOH A 904 CRYST1 60.888 71.466 76.996 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016424 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012988 0.00000