HEADER VIRAL PROTEIN 03-JUN-15 5BU8 TITLE HK620 TAIL NEEDLE CRYSTALLIZED AT PH 7.5 AND DERIVATIZED WITH XENON COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA STABILIZATION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA STABILIZATION PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA PHAGE HK620; SOURCE 3 ORGANISM_TAXID: 155148; SOURCE 4 GENE: 26; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SALMONELLA PHAGE HK620; SOURCE 10 ORGANISM_TAXID: 155148; SOURCE 11 GENE: 26; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS VIRAL PROTEIN, HK620, TAIL NEEDLE, MEMBRANE PENETRATION EXPDTA X-RAY DIFFRACTION AUTHOR R.S.SANKHALA,G.CINGOLANI REVDAT 7 27-SEP-23 5BU8 1 REMARK REVDAT 6 17-JUN-20 5BU8 1 LINK REVDAT 5 25-DEC-19 5BU8 1 REMARK REVDAT 4 13-SEP-17 5BU8 1 JRNL REMARK REVDAT 3 13-JAN-16 5BU8 1 JRNL REVDAT 2 02-DEC-15 5BU8 1 JRNL REVDAT 1 25-NOV-15 5BU8 0 JRNL AUTH A.BHARDWAJ,R.S.SANKHALA,A.S.OLIA,D.BROOKE,S.R.CASJENS, JRNL AUTH 2 D.J.TAYLOR,P.E.PREVELIGE,G.CINGOLANI JRNL TITL STRUCTURAL PLASTICITY OF THE PROTEIN PLUG THAT TRAPS NEWLY JRNL TITL 2 PACKAGED GENOMES IN PODOVIRIDAE VIRIONS. JRNL REF J.BIOL.CHEM. V. 291 215 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26574546 JRNL DOI 10.1074/JBC.M115.696260 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.250 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 26470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.550 REMARK 3 FREE R VALUE TEST SET COUNT : 1468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 8.2918 - 4.5373 0.91 2580 210 0.2563 0.2733 REMARK 3 2 4.5373 - 3.7053 0.94 2622 148 0.2015 0.2179 REMARK 3 3 3.7053 - 3.2696 0.94 2635 155 0.2080 0.2213 REMARK 3 4 3.2696 - 2.9860 0.96 2713 82 0.2269 0.2691 REMARK 3 5 2.9860 - 2.7806 0.95 2646 130 0.2048 0.2668 REMARK 3 6 2.7806 - 2.6222 0.94 2636 150 0.2313 0.2362 REMARK 3 7 2.6222 - 2.4946 0.92 2582 153 0.2429 0.2671 REMARK 3 8 2.4946 - 2.3887 0.81 2272 132 0.2444 0.2527 REMARK 3 9 2.3887 - 2.2988 0.69 1883 110 0.2517 0.3068 REMARK 3 10 2.2988 - 2.2211 0.58 1633 88 0.2802 0.3207 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2830 REMARK 3 ANGLE : 0.892 3860 REMARK 3 CHIRALITY : 0.034 487 REMARK 3 PLANARITY : 0.004 502 REMARK 3 DIHEDRAL : 14.578 998 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1712 113.8513 94.9698 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: 0.1033 REMARK 3 T33: 0.0227 T12: 0.0108 REMARK 3 T13: 0.0196 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.1102 L22: 0.0321 REMARK 3 L33: 1.4861 L12: -0.0091 REMARK 3 L13: 0.0577 L23: -0.1813 REMARK 3 S TENSOR REMARK 3 S11: -0.0594 S12: -0.0580 S13: 0.0737 REMARK 3 S21: 0.1103 S22: -0.0812 S23: 0.0480 REMARK 3 S31: -0.1251 S32: 0.1804 S33: -0.1650 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1249 111.4033 191.1851 REMARK 3 T TENSOR REMARK 3 T11: 0.0682 T22: 0.0530 REMARK 3 T33: 0.0812 T12: -0.0195 REMARK 3 T13: 0.0036 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.2262 L22: 0.1406 REMARK 3 L33: 0.7730 L12: -0.0476 REMARK 3 L13: -0.0462 L23: -0.0800 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0309 S13: 0.0097 REMARK 3 S21: -0.0162 S22: 0.0201 S23: -0.0173 REMARK 3 S31: 0.0127 S32: -0.0779 S33: -0.0077 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3467 100.1145 -40.5535 REMARK 3 T TENSOR REMARK 3 T11: 0.1699 T22: 0.1484 REMARK 3 T33: 0.0188 T12: 0.0413 REMARK 3 T13: -0.0062 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 0.0943 L22: 0.0429 REMARK 3 L33: 1.0386 L12: 0.0255 REMARK 3 L13: -0.1018 L23: 0.1380 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: -0.0539 S13: 0.0195 REMARK 3 S21: 0.0906 S22: -0.0431 S23: -0.0470 REMARK 3 S31: 0.0216 S32: -0.0834 S33: -0.0576 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2344 102.8517 55.6689 REMARK 3 T TENSOR REMARK 3 T11: 0.0424 T22: 0.0504 REMARK 3 T33: 0.0560 T12: 0.0037 REMARK 3 T13: -0.0036 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.1824 L22: 0.1855 REMARK 3 L33: 0.6281 L12: -0.0124 REMARK 3 L13: 0.0717 L23: 0.0117 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: -0.0016 S13: 0.0071 REMARK 3 S21: -0.0505 S22: -0.0035 S23: 0.0386 REMARK 3 S31: 0.0793 S32: 0.0159 S33: 0.0059 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 28.988 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2POH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 1000, 0.1M TRIS PH 7.5 REMARK 280 DERIVATIZED WITH XENON GAS PRIOR TO DATA COLLECTION, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 130.92600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 151.18032 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -65.46300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 188.97540 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 152.74700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 113.38524 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -21.82100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 189.10130 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 301 LIES ON A SPECIAL POSITION. REMARK 375 XE XE A 302 LIES ON A SPECIAL POSITION. REMARK 375 XE XE A 303 LIES ON A SPECIAL POSITION. REMARK 375 XE XE A 304 LIES ON A SPECIAL POSITION. REMARK 375 XE XE A 305 LIES ON A SPECIAL POSITION. REMARK 375 CA CA B 301 LIES ON A SPECIAL POSITION. REMARK 375 XE XE B 302 LIES ON A SPECIAL POSITION. REMARK 375 XE XE B 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 521 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 562 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 LEU B 6 REMARK 465 ASN B 7 REMARK 465 GLU B 8 REMARK 465 PRO B 9 REMARK 465 VAL B 10 REMARK 465 ILE B 11 REMARK 465 ILE B 12 REMARK 465 GLN B 13 REMARK 465 ALA B 14 REMARK 465 THR B 15 REMARK 465 ARG B 16 REMARK 465 LEU B 17 REMARK 465 ASP B 18 REMARK 465 THR B 19 REMARK 465 SER B 20 REMARK 465 ILE B 21 REMARK 465 LEU B 22 REMARK 465 PRO B 23 REMARK 465 ARG B 24 REMARK 465 ASN B 25 REMARK 465 ILE B 26 REMARK 465 PHE B 27 REMARK 465 SER B 28 REMARK 465 GLN B 29 REMARK 465 SER B 30 REMARK 465 TYR B 31 REMARK 465 LEU B 32 REMARK 465 LEU B 33 REMARK 465 TYR B 34 REMARK 465 VAL B 35 REMARK 465 ILE B 36 REMARK 465 ALA B 37 REMARK 465 GLN B 38 REMARK 465 GLY B 39 REMARK 465 THR B 40 REMARK 465 ASP B 41 REMARK 465 VAL B 42 REMARK 465 GLY B 43 REMARK 465 ASN B 44 REMARK 465 VAL B 45 REMARK 465 ALA B 46 REMARK 465 ASN B 47 REMARK 465 LYS B 48 REMARK 465 ALA B 49 REMARK 465 ASN B 50 REMARK 465 GLU B 51 REMARK 465 ALA B 52 REMARK 465 GLY B 53 REMARK 465 GLN B 54 REMARK 465 GLY B 55 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 UNK A 29 -122.66 39.16 REMARK 500 UNK A 30 -125.17 63.22 REMARK 500 UNK A 33 -27.54 -148.28 REMARK 500 UNK A 36 -55.24 60.76 REMARK 500 UNK A 37 -171.57 64.61 REMARK 500 THR A 159 -52.59 75.33 REMARK 500 TYR B 57 -14.13 63.24 REMARK 500 THR B 159 -53.77 75.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 UNK A 31 UNK A 32 148.70 REMARK 500 UNK A 39 UNK A 40 116.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 529 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 530 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 531 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 532 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH B 568 DISTANCE = 7.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 63 OD1 REMARK 620 2 GLN A 66 OE1 83.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 63 OD1 REMARK 620 2 GLN B 66 OE1 97.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XE B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FOH RELATED DB: PDB REMARK 900 HK620 TAIL NEEDLE CRYSTAL FORM II REMARK 900 RELATED ID: 5BU5 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 26-46 IN CHAIN A HAD BEEN MODELED AS A POLY ALA BUT REMARK 999 REPRESENTED HERE AS UNK RESIDUES IN THE COORDINATES. RESIDUE REMARK 999 NUMBERS ARE ARBITRARY AS THE EXACT REGISTRY IS NOT CLEAR. FULL REMARK 999 SEQUENCE IS THE SAME AS THAT OF THE CHAIN B. DBREF 5BU8 A 56 233 UNP Q9AYZ3 Q9AYZ3_BPHK6 56 233 DBREF 5BU8 B 1 233 UNP Q9AYZ3 Q9AYZ3_BPHK6 1 233 SEQRES 1 A 199 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 A 199 UNK UNK UNK UNK UNK UNK UNK UNK ALA TYR ASP ALA GLN SEQRES 3 A 199 VAL LYS ASN ASP GLU GLN ASP VAL GLU LEU ALA ASP HIS SEQRES 4 A 199 ASP ALA ARG ILE ALA ALA ASN THR LYS ALA ILE ASN ILE SEQRES 5 A 199 LEU GLU VAL ARG LEU THR THR ALA GLU GLY LYS ILE VAL SEQRES 6 A 199 VAL LEU ARG SER ASP VAL ASP TYR LEU LEU ASP GLU VAL SEQRES 7 A 199 ILE ASP ILE GLN ALA HIS LEU VAL THR VAL ASP GLN ARG SEQRES 8 A 199 LEU ASP GLY VAL GLU SER ASP VAL SER ASP ILE LYS SER SEQRES 9 A 199 ASP TYR VAL SER LYS THR VAL THR GLU SER GLN SER LEU SEQRES 10 A 199 ALA SER PRO LEU ASP VAL LYS THR SER TYR SER VAL ASP SEQRES 11 A 199 GLY ILE GLN VAL VAL GLY ALA ARG GLN THR GLY TRP THR SEQRES 12 A 199 ALA ALA THR GLY THR PRO LEU LEU GLY SER PHE ASN ALA SEQRES 13 A 199 ASN GLN SER TYR THR VAL GLY THR THR TYR THR GLN SER SEQRES 14 A 199 GLU VAL ALA ALA LEU ALA THR GLY LEU GLU GLN ALA ARG SEQRES 15 A 199 GLN ARG ILE LEU ALA LEU GLU THR ALA LEU ARG LEU HIS SEQRES 16 A 199 GLY LEU ILE ASP SEQRES 1 B 233 MET ALA ASP SER ASN LEU ASN GLU PRO VAL ILE ILE GLN SEQRES 2 B 233 ALA THR ARG LEU ASP THR SER ILE LEU PRO ARG ASN ILE SEQRES 3 B 233 PHE SER GLN SER TYR LEU LEU TYR VAL ILE ALA GLN GLY SEQRES 4 B 233 THR ASP VAL GLY ASN VAL ALA ASN LYS ALA ASN GLU ALA SEQRES 5 B 233 GLY GLN GLY ALA TYR ASP ALA GLN VAL LYS ASN ASP GLU SEQRES 6 B 233 GLN ASP VAL GLU LEU ALA ASP HIS ASP ALA ARG ILE ALA SEQRES 7 B 233 ALA ASN THR LYS ALA ILE ASN ILE LEU GLU VAL ARG LEU SEQRES 8 B 233 THR THR ALA GLU GLY LYS ILE VAL VAL LEU ARG SER ASP SEQRES 9 B 233 VAL ASP TYR LEU LEU ASP GLU VAL ILE ASP ILE GLN ALA SEQRES 10 B 233 HIS LEU VAL THR VAL ASP GLN ARG LEU ASP GLY VAL GLU SEQRES 11 B 233 SER ASP VAL SER ASP ILE LYS SER ASP TYR VAL SER LYS SEQRES 12 B 233 THR VAL THR GLU SER GLN SER LEU ALA SER PRO LEU ASP SEQRES 13 B 233 VAL LYS THR SER TYR SER VAL ASP GLY ILE GLN VAL VAL SEQRES 14 B 233 GLY ALA ARG GLN THR GLY TRP THR ALA ALA THR GLY THR SEQRES 15 B 233 PRO LEU LEU GLY SER PHE ASN ALA ASN GLN SER TYR THR SEQRES 16 B 233 VAL GLY THR THR TYR THR GLN SER GLU VAL ALA ALA LEU SEQRES 17 B 233 ALA THR GLY LEU GLU GLN ALA ARG GLN ARG ILE LEU ALA SEQRES 18 B 233 LEU GLU THR ALA LEU ARG LEU HIS GLY LEU ILE ASP HET CA A 301 1 HET XE A 302 1 HET XE A 303 1 HET XE A 304 1 HET XE A 305 1 HET CA B 301 1 HET XE B 302 1 HET XE B 303 1 HETNAM CA CALCIUM ION HETNAM XE XENON FORMUL 3 CA 2(CA 2+) FORMUL 4 XE 6(XE) FORMUL 11 HOH *300(H2 O) HELIX 1 AA1 TYR A 57 TYR A 140 1 84 HELIX 2 AA2 THR A 201 GLY A 230 1 30 HELIX 3 AA3 TYR B 57 TYR B 140 1 84 HELIX 4 AA4 THR B 201 GLY B 230 1 30 SHEET 1 AA1 2 TYR A 161 VAL A 163 0 SHEET 2 AA1 2 ILE A 166 VAL A 169 -1 O VAL A 169 N TYR A 161 SHEET 1 AA2 2 TYR B 161 VAL B 163 0 SHEET 2 AA2 2 ILE B 166 VAL B 169 -1 O VAL B 169 N TYR B 161 LINK C UNK A 26 N UNK A 27 1555 1555 1.33 LINK C UNK A 27 N UNK A 28 1555 1555 1.33 LINK C UNK A 28 N UNK A 29 1555 1555 1.33 LINK C UNK A 29 N UNK A 30 1555 1555 1.33 LINK C UNK A 30 N UNK A 31 1555 1555 1.33 LINK C UNK A 31 N UNK A 32 1555 1555 1.34 LINK C UNK A 32 N UNK A 33 1555 1555 1.34 LINK C UNK A 33 N UNK A 34 1555 1555 1.33 LINK C UNK A 34 N UNK A 35 1555 1555 1.33 LINK C UNK A 35 N UNK A 36 1555 1555 1.34 LINK C UNK A 36 N UNK A 37 1555 1555 1.33 LINK C UNK A 37 N UNK A 38 1555 1555 1.33 LINK C UNK A 38 N UNK A 39 1555 1555 1.33 LINK C UNK A 39 N UNK A 40 1555 1555 1.32 LINK C UNK A 40 N UNK A 41 1555 1555 1.33 LINK C UNK A 41 N UNK A 42 1555 1555 1.32 LINK C UNK A 42 N UNK A 43 1555 1555 1.33 LINK C UNK A 43 N UNK A 44 1555 1555 1.33 LINK C UNK A 44 N UNK A 45 1555 1555 1.34 LINK C UNK A 45 N UNK A 46 1555 1555 1.33 LINK OD1 ASN A 63 CA CA A 301 1555 1555 2.45 LINK OE1 GLN A 66 CA CA A 301 1555 1555 2.55 LINK OD1 ASN B 63 CA CA B 301 1555 1555 2.51 LINK OE1 GLN B 66 CA CA B 301 1555 1555 2.39 CISPEP 1 UNK A 40 UNK A 41 0 -16.75 CISPEP 2 UNK A 44 UNK A 45 0 -4.27 SITE 1 AC1 2 ASN A 63 GLN A 66 SITE 1 AC2 1 LEU A 108 SITE 1 AC3 2 ASN B 63 GLN B 66 SITE 1 AC4 1 TYR B 161 CRYST1 43.642 43.642 271.063 90.00 90.00 120.00 P 3 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022914 0.013229 0.000000 0.00000 SCALE2 0.000000 0.026458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003689 0.00000