HEADER HYDROLASE 04-JUN-15 5BV3 TITLE YEAST SCAVENGER DECAPPING ENZYME IN COMPLEX WITH M7GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: M7GPPPX DIPHOSPHATASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: DCS1P, UNP RESIDUES 8-350; COMPND 5 SYNONYM: DCS-1,HINT-RELATED 7MEGMP-DIRECTED HYDROLASE 1,PROTEIN COMPND 6 DCS1P,SCAVENGER MRNA-DECAPPING ENZYME DCPS; COMPND 7 EC: 3.6.1.59; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 GENE: DCS1, YLR270W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETM-1060 KEYWDS SCAVENGER DECAPPING ENZYME, CAP STRUCTURE, DECAPPING ENZYME, KEYWDS 2 SUBSTRATE INHIBITION, PROTEIN DYNAMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.NEU,U.NEU,R.SPRANGERS REVDAT 4 10-JAN-24 5BV3 1 REMARK REVDAT 3 26-AUG-15 5BV3 1 JRNL REVDAT 2 19-AUG-15 5BV3 1 JRNL REVDAT 1 12-AUG-15 5BV3 0 JRNL AUTH A.NEU,U.NEU,A.L.FUCHS,B.SCHLAGER,R.SPRANGERS JRNL TITL AN EXCESS OF CATALYTICALLY REQUIRED MOTIONS INHIBITS THE JRNL TITL 2 SCAVENGER DECAPPING ENZYME. JRNL REF NAT.CHEM.BIOL. V. 11 697 2015 JRNL REFN ESSN 1552-4469 JRNL PMID 26258763 JRNL DOI 10.1038/NCHEMBIO.1866 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 78749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4133 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5709 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.3910 REMARK 3 BIN FREE R VALUE SET COUNT : 301 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10329 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.37000 REMARK 3 B22 (A**2) : 1.63000 REMARK 3 B33 (A**2) : 3.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.274 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.374 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10681 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 9954 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14534 ; 1.354 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 22817 ; 1.214 ; 2.998 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1278 ; 5.934 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 502 ;33.862 ;24.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1786 ;13.843 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;21.417 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1622 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11962 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2434 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5151 ; 3.134 ; 5.752 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5150 ; 3.134 ; 5.752 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6416 ; 4.207 ; 7.235 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 7 344 B 7 344 16592 0.140 0.050 REMARK 3 2 A 7 345 C 7 345 19258 0.050 0.050 REMARK 3 3 A 7 342 D 7 342 16094 0.140 0.050 REMARK 3 4 B 6 344 C 6 344 16413 0.140 0.050 REMARK 3 5 B 6 342 D 6 342 17925 0.050 0.050 REMARK 3 6 C 6 342 D 6 342 16062 0.140 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5816 -12.9992 32.9962 REMARK 3 T TENSOR REMARK 3 T11: 0.6732 T22: 0.0618 REMARK 3 T33: 0.0148 T12: -0.0405 REMARK 3 T13: -0.0265 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 5.2749 L22: 0.6462 REMARK 3 L33: 2.5384 L12: -0.0181 REMARK 3 L13: -0.0284 L23: 0.4047 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: 0.3989 S13: -0.0990 REMARK 3 S21: -0.2761 S22: -0.0845 S23: 0.0302 REMARK 3 S31: 0.4531 S32: -0.2662 S33: 0.0267 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8501 11.0072 31.9202 REMARK 3 T TENSOR REMARK 3 T11: 0.5277 T22: 0.0722 REMARK 3 T33: 0.0378 T12: -0.0287 REMARK 3 T13: 0.0533 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.2692 L22: 1.6183 REMARK 3 L33: 3.7067 L12: 0.1860 REMARK 3 L13: 0.7402 L23: 0.4896 REMARK 3 S TENSOR REMARK 3 S11: -0.0893 S12: 0.1309 S13: 0.0451 REMARK 3 S21: -0.2287 S22: 0.0776 S23: -0.2223 REMARK 3 S31: -0.2684 S32: 0.3826 S33: 0.0117 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 129 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7206 -13.0966 35.5816 REMARK 3 T TENSOR REMARK 3 T11: 0.6512 T22: 0.1891 REMARK 3 T33: 0.0397 T12: -0.1165 REMARK 3 T13: -0.0632 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 4.5287 L22: 1.3459 REMARK 3 L33: 2.3129 L12: -0.0773 REMARK 3 L13: -0.9126 L23: -0.0189 REMARK 3 S TENSOR REMARK 3 S11: 0.0501 S12: 0.0382 S13: -0.3279 REMARK 3 S21: -0.1034 S22: -0.0695 S23: 0.1329 REMARK 3 S31: 0.3927 S32: -0.6338 S33: 0.0194 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 130 B 344 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7246 19.1744 44.4870 REMARK 3 T TENSOR REMARK 3 T11: 0.4686 T22: 0.1649 REMARK 3 T33: 0.0306 T12: 0.0572 REMARK 3 T13: 0.0041 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.8672 L22: 1.5851 REMARK 3 L33: 4.0975 L12: -0.1483 REMARK 3 L13: 0.6887 L23: -0.0189 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.0834 S13: 0.0211 REMARK 3 S21: -0.0134 S22: 0.0219 S23: 0.2093 REMARK 3 S31: -0.2580 S32: -0.6248 S33: -0.0284 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 126 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7362 -3.0797 84.1437 REMARK 3 T TENSOR REMARK 3 T11: 0.4589 T22: 0.2283 REMARK 3 T33: 0.0248 T12: 0.0365 REMARK 3 T13: -0.0431 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 0.4032 L22: 3.8143 REMARK 3 L33: 2.3137 L12: -0.6472 REMARK 3 L13: -0.1422 L23: 0.3301 REMARK 3 S TENSOR REMARK 3 S11: -0.1337 S12: -0.1357 S13: 0.0440 REMARK 3 S21: 0.4846 S22: 0.1735 S23: -0.1249 REMARK 3 S31: 0.2113 S32: 0.1858 S33: -0.0399 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 127 C 346 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7944 -21.4554 84.7145 REMARK 3 T TENSOR REMARK 3 T11: 0.7436 T22: 0.2251 REMARK 3 T33: 0.0359 T12: -0.1251 REMARK 3 T13: 0.0899 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.5235 L22: 2.0286 REMARK 3 L33: 4.1775 L12: -0.1916 REMARK 3 L13: -0.2410 L23: 0.9268 REMARK 3 S TENSOR REMARK 3 S11: -0.1371 S12: 0.0773 S13: -0.1925 REMARK 3 S21: 0.2058 S22: -0.0425 S23: 0.1302 REMARK 3 S31: 1.0372 S32: -0.4256 S33: 0.1796 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 127 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2021 6.0599 80.9844 REMARK 3 T TENSOR REMARK 3 T11: 0.3948 T22: 0.2067 REMARK 3 T33: 0.0769 T12: -0.0144 REMARK 3 T13: -0.0231 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 0.8625 L22: 4.2860 REMARK 3 L33: 2.8381 L12: -1.0367 REMARK 3 L13: -0.1261 L23: -0.7516 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: 0.0764 S13: 0.1997 REMARK 3 S21: 0.0963 S22: 0.0777 S23: -0.4004 REMARK 3 S31: -0.2368 S32: 0.2236 S33: -0.0511 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 128 D 342 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1766 -8.1782 71.7206 REMARK 3 T TENSOR REMARK 3 T11: 0.5222 T22: 0.6256 REMARK 3 T33: 0.1443 T12: -0.1308 REMARK 3 T13: -0.0129 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 0.9104 L22: 0.7932 REMARK 3 L33: 4.3770 L12: -0.1373 REMARK 3 L13: -0.1640 L23: 0.8209 REMARK 3 S TENSOR REMARK 3 S11: -0.0967 S12: 0.1216 S13: 0.1500 REMARK 3 S21: -0.0643 S22: -0.0615 S23: 0.2416 REMARK 3 S31: -0.0374 S32: -0.9864 S33: 0.1582 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5BV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83079 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.310 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.71600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1XMM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 100 MM NACL, 1.6 M REMARK 280 AMSO4, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.99500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.99500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 6 REMARK 465 VAL A 56 REMARK 465 ARG A 57 REMARK 465 ARG A 58 REMARK 465 PRO A 59 REMARK 465 SER A 60 REMARK 465 GLN A 61 REMARK 465 ASN A 155 REMARK 465 ASN A 156 REMARK 465 GLU A 183 REMARK 465 ASN A 184 REMARK 465 VAL A 346 REMARK 465 ASN A 347 REMARK 465 GLY A 348 REMARK 465 PHE A 349 REMARK 465 LYS A 350 REMARK 465 THR B 55 REMARK 465 VAL B 56 REMARK 465 ARG B 57 REMARK 465 ARG B 58 REMARK 465 PRO B 59 REMARK 465 SER B 60 REMARK 465 GLN B 61 REMARK 465 ASP B 62 REMARK 465 GLY B 63 REMARK 465 ARG B 64 REMARK 465 SER B 65 REMARK 465 CYS B 154 REMARK 465 ASN B 155 REMARK 465 ASN B 156 REMARK 465 GLY B 157 REMARK 465 ARG B 158 REMARK 465 LEU B 159 REMARK 465 LYS B 160 REMARK 465 LYS B 196 REMARK 465 TRP B 197 REMARK 465 ASP B 198 REMARK 465 GLY B 199 REMARK 465 MET B 200 REMARK 465 ILE B 345 REMARK 465 VAL B 346 REMARK 465 ASN B 347 REMARK 465 GLY B 348 REMARK 465 PHE B 349 REMARK 465 LYS B 350 REMARK 465 ARG C 58 REMARK 465 PRO C 59 REMARK 465 SER C 60 REMARK 465 GLN C 61 REMARK 465 MET C 153 REMARK 465 CYS C 154 REMARK 465 ASN C 155 REMARK 465 ASN C 156 REMARK 465 ASN C 347 REMARK 465 GLY C 348 REMARK 465 PHE C 349 REMARK 465 LYS C 350 REMARK 465 GLU D 54 REMARK 465 THR D 55 REMARK 465 VAL D 56 REMARK 465 ARG D 57 REMARK 465 ARG D 58 REMARK 465 PRO D 59 REMARK 465 SER D 60 REMARK 465 GLN D 61 REMARK 465 ASP D 62 REMARK 465 GLY D 63 REMARK 465 ARG D 64 REMARK 465 SER D 65 REMARK 465 THR D 66 REMARK 465 CYS D 154 REMARK 465 ASN D 155 REMARK 465 ASN D 156 REMARK 465 GLY D 157 REMARK 465 ARG D 158 REMARK 465 LEU D 159 REMARK 465 LYS D 160 REMARK 465 TRP D 161 REMARK 465 LYS D 196 REMARK 465 TRP D 197 REMARK 465 ASP D 198 REMARK 465 GLY D 199 REMARK 465 MET D 200 REMARK 465 PRO D 343 REMARK 465 LYS D 344 REMARK 465 ILE D 345 REMARK 465 VAL D 346 REMARK 465 ASN D 347 REMARK 465 GLY D 348 REMARK 465 PHE D 349 REMARK 465 LYS D 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 THR A 55 OG1 CG2 REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 VAL A 68 CG1 CG2 REMARK 470 LEU A 69 CG CD1 CD2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 ASP A 186 CG OD1 OD2 REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 ILE A 345 CG1 CG2 CD1 REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 ASN B 38 CG OD1 ND2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 THR B 66 OG1 CG2 REMARK 470 VAL B 68 CG1 CG2 REMARK 470 LEU B 69 CG CD1 CD2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 LYS B 143 CD CE NZ REMARK 470 GLU B 168 CG CD OE1 OE2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 470 MET B 195 CG SD CE REMARK 470 ASN B 201 CG OD1 ND2 REMARK 470 GLU B 328 CG CD OE1 OE2 REMARK 470 LYS B 332 CG CD CE NZ REMARK 470 LYS B 344 CG CD CE NZ REMARK 470 LYS C 13 CG CD CE NZ REMARK 470 GLN C 16 CD OE1 NE2 REMARK 470 ARG C 57 CG CD NE CZ NH1 NH2 REMARK 470 SER C 65 OG REMARK 470 VAL C 68 CG1 CG2 REMARK 470 LYS C 86 CE NZ REMARK 470 LYS C 143 CG CD CE NZ REMARK 470 GLU C 152 CG CD OE1 OE2 REMARK 470 GLU C 182 CG CD OE1 OE2 REMARK 470 GLU C 183 CG CD OE1 OE2 REMARK 470 LYS C 185 CG CD CE NZ REMARK 470 ASP C 186 CG OD1 OD2 REMARK 470 ARG C 223 CD NE CZ NH1 NH2 REMARK 470 LYS C 323 CD CE NZ REMARK 470 ARG C 324 CD NE CZ NH1 NH2 REMARK 470 LYS C 341 CG CD CE NZ REMARK 470 LYS C 344 CG CD CE NZ REMARK 470 VAL C 346 CG1 CG2 REMARK 470 LYS D 13 CG CD CE NZ REMARK 470 LYS D 39 CE NZ REMARK 470 LEU D 69 CG CD1 CD2 REMARK 470 LYS D 125 CG CD CE NZ REMARK 470 GLU D 128 OE1 OE2 REMARK 470 GLU D 140 CG CD OE1 OE2 REMARK 470 LYS D 143 CD CE NZ REMARK 470 GLU D 152 CG CD OE1 OE2 REMARK 470 MET D 153 CG SD CE REMARK 470 ASN D 164 CG OD1 ND2 REMARK 470 GLU D 168 CG CD OE1 OE2 REMARK 470 GLU D 171 CG CD OE1 OE2 REMARK 470 GLU D 173 CG CD OE1 OE2 REMARK 470 ARG D 174 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 182 CG CD OE1 OE2 REMARK 470 GLU D 183 CG CD OE1 OE2 REMARK 470 LYS D 185 CG CD CE NZ REMARK 470 MET D 195 CG SD CE REMARK 470 ASN D 201 CG OD1 ND2 REMARK 470 LYS D 217 CG CD CE NZ REMARK 470 ARG D 223 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 324 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 328 CG CD OE1 OE2 REMARK 470 LYS D 332 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 78 -118.93 57.61 REMARK 500 ASN A 91 135.93 -170.33 REMARK 500 ASP A 92 -124.39 55.84 REMARK 500 ASN A 108 67.37 -158.51 REMARK 500 LYS A 287 -57.98 -148.06 REMARK 500 CYS B 78 -119.14 58.33 REMARK 500 ASN B 91 113.67 -162.80 REMARK 500 ASP B 92 -119.22 58.03 REMARK 500 ASN B 108 65.73 -158.10 REMARK 500 LYS B 287 -58.49 -145.07 REMARK 500 CYS C 78 -118.70 56.54 REMARK 500 ASN C 91 141.49 -173.13 REMARK 500 ASP C 92 -125.40 57.58 REMARK 500 ASN C 108 68.42 -158.41 REMARK 500 LYS C 185 -60.01 -13.99 REMARK 500 LYS C 287 -58.17 -146.81 REMARK 500 CYS D 78 -120.74 57.63 REMARK 500 ASN D 91 114.88 -161.26 REMARK 500 ASP D 92 -121.64 57.34 REMARK 500 ASN D 108 65.72 -158.81 REMARK 500 LYS D 287 -58.30 -145.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M7G A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M7G C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 404 DBREF 5BV3 A 8 350 UNP Q06151 DCPS_YEAST 8 350 DBREF 5BV3 B 8 350 UNP Q06151 DCPS_YEAST 8 350 DBREF 5BV3 C 8 350 UNP Q06151 DCPS_YEAST 8 350 DBREF 5BV3 D 8 350 UNP Q06151 DCPS_YEAST 8 350 SEQADV 5BV3 GLY A 6 UNP Q06151 EXPRESSION TAG SEQADV 5BV3 MET A 7 UNP Q06151 EXPRESSION TAG SEQADV 5BV3 ASN A 268 UNP Q06151 HIS 268 ENGINEERED MUTATION SEQADV 5BV3 GLY B 6 UNP Q06151 EXPRESSION TAG SEQADV 5BV3 MET B 7 UNP Q06151 EXPRESSION TAG SEQADV 5BV3 ASN B 268 UNP Q06151 HIS 268 ENGINEERED MUTATION SEQADV 5BV3 GLY C 6 UNP Q06151 EXPRESSION TAG SEQADV 5BV3 MET C 7 UNP Q06151 EXPRESSION TAG SEQADV 5BV3 ASN C 268 UNP Q06151 HIS 268 ENGINEERED MUTATION SEQADV 5BV3 GLY D 6 UNP Q06151 EXPRESSION TAG SEQADV 5BV3 MET D 7 UNP Q06151 EXPRESSION TAG SEQADV 5BV3 ASN D 268 UNP Q06151 HIS 268 ENGINEERED MUTATION SEQRES 1 A 345 GLY MET PHE ALA SER LEU ILE LYS ARG PHE GLN PHE VAL SEQRES 2 A 345 SER VAL LEU ASP SER ASN PRO GLN THR LYS VAL MET SER SEQRES 3 A 345 LEU LEU GLY THR ILE ASP ASN LYS ASP ALA ILE ILE THR SEQRES 4 A 345 ALA GLU LYS THR HIS PHE LEU PHE ASP GLU THR VAL ARG SEQRES 5 A 345 ARG PRO SER GLN ASP GLY ARG SER THR PRO VAL LEU TYR SEQRES 6 A 345 ASN CYS GLU ASN GLU TYR SER CYS ILE ASN GLY ILE GLN SEQRES 7 A 345 GLU LEU LYS GLU ILE THR SER ASN ASP ILE TYR TYR TRP SEQRES 8 A 345 GLY LEU SER VAL ILE LYS GLN ASP MET GLU SER ASN PRO SEQRES 9 A 345 THR ALA LYS LEU ASN LEU ILE TRP PRO ALA THR PRO ILE SEQRES 10 A 345 HIS ILE LYS LYS TYR GLU GLN GLN ASN PHE HIS LEU VAL SEQRES 11 A 345 ARG GLU THR PRO GLU MET TYR LYS ARG ILE VAL GLN PRO SEQRES 12 A 345 TYR ILE GLU GLU MET CYS ASN ASN GLY ARG LEU LYS TRP SEQRES 13 A 345 VAL ASN ASN ILE LEU TYR GLU GLY ALA GLU SER GLU ARG SEQRES 14 A 345 VAL VAL TYR LYS ASP PHE SER GLU GLU ASN LYS ASP ASP SEQRES 15 A 345 GLY PHE LEU ILE LEU PRO ASP MET LYS TRP ASP GLY MET SEQRES 16 A 345 ASN LEU ASP SER LEU TYR LEU VAL ALA ILE VAL TYR ARG SEQRES 17 A 345 THR ASP ILE LYS THR ILE ARG ASP LEU ARG TYR SER ASP SEQRES 18 A 345 ARG GLN TRP LEU ILE ASN LEU ASN ASN LYS ILE ARG SER SEQRES 19 A 345 ILE VAL PRO GLY CYS TYR ASN TYR ALA VAL HIS PRO ASP SEQRES 20 A 345 GLU LEU ARG ILE LEU VAL HIS TYR GLN PRO SER TYR TYR SEQRES 21 A 345 HIS PHE ASN ILE HIS ILE VAL ASN ILE LYS HIS PRO GLY SEQRES 22 A 345 LEU GLY ASN SER ILE ALA ALA GLY LYS ALA ILE LEU LEU SEQRES 23 A 345 GLU ASP ILE ILE GLU MET LEU ASN TYR LEU GLY PRO GLU SEQRES 24 A 345 GLY TYR MET ASN LYS THR ILE THR TYR ALA ILE GLY GLU SEQRES 25 A 345 ASN HIS ASP LEU TRP LYS ARG GLY LEU GLU GLU GLU LEU SEQRES 26 A 345 THR LYS GLN LEU GLU ARG ASP GLY ILE PRO LYS ILE PRO SEQRES 27 A 345 LYS ILE VAL ASN GLY PHE LYS SEQRES 1 B 345 GLY MET PHE ALA SER LEU ILE LYS ARG PHE GLN PHE VAL SEQRES 2 B 345 SER VAL LEU ASP SER ASN PRO GLN THR LYS VAL MET SER SEQRES 3 B 345 LEU LEU GLY THR ILE ASP ASN LYS ASP ALA ILE ILE THR SEQRES 4 B 345 ALA GLU LYS THR HIS PHE LEU PHE ASP GLU THR VAL ARG SEQRES 5 B 345 ARG PRO SER GLN ASP GLY ARG SER THR PRO VAL LEU TYR SEQRES 6 B 345 ASN CYS GLU ASN GLU TYR SER CYS ILE ASN GLY ILE GLN SEQRES 7 B 345 GLU LEU LYS GLU ILE THR SER ASN ASP ILE TYR TYR TRP SEQRES 8 B 345 GLY LEU SER VAL ILE LYS GLN ASP MET GLU SER ASN PRO SEQRES 9 B 345 THR ALA LYS LEU ASN LEU ILE TRP PRO ALA THR PRO ILE SEQRES 10 B 345 HIS ILE LYS LYS TYR GLU GLN GLN ASN PHE HIS LEU VAL SEQRES 11 B 345 ARG GLU THR PRO GLU MET TYR LYS ARG ILE VAL GLN PRO SEQRES 12 B 345 TYR ILE GLU GLU MET CYS ASN ASN GLY ARG LEU LYS TRP SEQRES 13 B 345 VAL ASN ASN ILE LEU TYR GLU GLY ALA GLU SER GLU ARG SEQRES 14 B 345 VAL VAL TYR LYS ASP PHE SER GLU GLU ASN LYS ASP ASP SEQRES 15 B 345 GLY PHE LEU ILE LEU PRO ASP MET LYS TRP ASP GLY MET SEQRES 16 B 345 ASN LEU ASP SER LEU TYR LEU VAL ALA ILE VAL TYR ARG SEQRES 17 B 345 THR ASP ILE LYS THR ILE ARG ASP LEU ARG TYR SER ASP SEQRES 18 B 345 ARG GLN TRP LEU ILE ASN LEU ASN ASN LYS ILE ARG SER SEQRES 19 B 345 ILE VAL PRO GLY CYS TYR ASN TYR ALA VAL HIS PRO ASP SEQRES 20 B 345 GLU LEU ARG ILE LEU VAL HIS TYR GLN PRO SER TYR TYR SEQRES 21 B 345 HIS PHE ASN ILE HIS ILE VAL ASN ILE LYS HIS PRO GLY SEQRES 22 B 345 LEU GLY ASN SER ILE ALA ALA GLY LYS ALA ILE LEU LEU SEQRES 23 B 345 GLU ASP ILE ILE GLU MET LEU ASN TYR LEU GLY PRO GLU SEQRES 24 B 345 GLY TYR MET ASN LYS THR ILE THR TYR ALA ILE GLY GLU SEQRES 25 B 345 ASN HIS ASP LEU TRP LYS ARG GLY LEU GLU GLU GLU LEU SEQRES 26 B 345 THR LYS GLN LEU GLU ARG ASP GLY ILE PRO LYS ILE PRO SEQRES 27 B 345 LYS ILE VAL ASN GLY PHE LYS SEQRES 1 C 345 GLY MET PHE ALA SER LEU ILE LYS ARG PHE GLN PHE VAL SEQRES 2 C 345 SER VAL LEU ASP SER ASN PRO GLN THR LYS VAL MET SER SEQRES 3 C 345 LEU LEU GLY THR ILE ASP ASN LYS ASP ALA ILE ILE THR SEQRES 4 C 345 ALA GLU LYS THR HIS PHE LEU PHE ASP GLU THR VAL ARG SEQRES 5 C 345 ARG PRO SER GLN ASP GLY ARG SER THR PRO VAL LEU TYR SEQRES 6 C 345 ASN CYS GLU ASN GLU TYR SER CYS ILE ASN GLY ILE GLN SEQRES 7 C 345 GLU LEU LYS GLU ILE THR SER ASN ASP ILE TYR TYR TRP SEQRES 8 C 345 GLY LEU SER VAL ILE LYS GLN ASP MET GLU SER ASN PRO SEQRES 9 C 345 THR ALA LYS LEU ASN LEU ILE TRP PRO ALA THR PRO ILE SEQRES 10 C 345 HIS ILE LYS LYS TYR GLU GLN GLN ASN PHE HIS LEU VAL SEQRES 11 C 345 ARG GLU THR PRO GLU MET TYR LYS ARG ILE VAL GLN PRO SEQRES 12 C 345 TYR ILE GLU GLU MET CYS ASN ASN GLY ARG LEU LYS TRP SEQRES 13 C 345 VAL ASN ASN ILE LEU TYR GLU GLY ALA GLU SER GLU ARG SEQRES 14 C 345 VAL VAL TYR LYS ASP PHE SER GLU GLU ASN LYS ASP ASP SEQRES 15 C 345 GLY PHE LEU ILE LEU PRO ASP MET LYS TRP ASP GLY MET SEQRES 16 C 345 ASN LEU ASP SER LEU TYR LEU VAL ALA ILE VAL TYR ARG SEQRES 17 C 345 THR ASP ILE LYS THR ILE ARG ASP LEU ARG TYR SER ASP SEQRES 18 C 345 ARG GLN TRP LEU ILE ASN LEU ASN ASN LYS ILE ARG SER SEQRES 19 C 345 ILE VAL PRO GLY CYS TYR ASN TYR ALA VAL HIS PRO ASP SEQRES 20 C 345 GLU LEU ARG ILE LEU VAL HIS TYR GLN PRO SER TYR TYR SEQRES 21 C 345 HIS PHE ASN ILE HIS ILE VAL ASN ILE LYS HIS PRO GLY SEQRES 22 C 345 LEU GLY ASN SER ILE ALA ALA GLY LYS ALA ILE LEU LEU SEQRES 23 C 345 GLU ASP ILE ILE GLU MET LEU ASN TYR LEU GLY PRO GLU SEQRES 24 C 345 GLY TYR MET ASN LYS THR ILE THR TYR ALA ILE GLY GLU SEQRES 25 C 345 ASN HIS ASP LEU TRP LYS ARG GLY LEU GLU GLU GLU LEU SEQRES 26 C 345 THR LYS GLN LEU GLU ARG ASP GLY ILE PRO LYS ILE PRO SEQRES 27 C 345 LYS ILE VAL ASN GLY PHE LYS SEQRES 1 D 345 GLY MET PHE ALA SER LEU ILE LYS ARG PHE GLN PHE VAL SEQRES 2 D 345 SER VAL LEU ASP SER ASN PRO GLN THR LYS VAL MET SER SEQRES 3 D 345 LEU LEU GLY THR ILE ASP ASN LYS ASP ALA ILE ILE THR SEQRES 4 D 345 ALA GLU LYS THR HIS PHE LEU PHE ASP GLU THR VAL ARG SEQRES 5 D 345 ARG PRO SER GLN ASP GLY ARG SER THR PRO VAL LEU TYR SEQRES 6 D 345 ASN CYS GLU ASN GLU TYR SER CYS ILE ASN GLY ILE GLN SEQRES 7 D 345 GLU LEU LYS GLU ILE THR SER ASN ASP ILE TYR TYR TRP SEQRES 8 D 345 GLY LEU SER VAL ILE LYS GLN ASP MET GLU SER ASN PRO SEQRES 9 D 345 THR ALA LYS LEU ASN LEU ILE TRP PRO ALA THR PRO ILE SEQRES 10 D 345 HIS ILE LYS LYS TYR GLU GLN GLN ASN PHE HIS LEU VAL SEQRES 11 D 345 ARG GLU THR PRO GLU MET TYR LYS ARG ILE VAL GLN PRO SEQRES 12 D 345 TYR ILE GLU GLU MET CYS ASN ASN GLY ARG LEU LYS TRP SEQRES 13 D 345 VAL ASN ASN ILE LEU TYR GLU GLY ALA GLU SER GLU ARG SEQRES 14 D 345 VAL VAL TYR LYS ASP PHE SER GLU GLU ASN LYS ASP ASP SEQRES 15 D 345 GLY PHE LEU ILE LEU PRO ASP MET LYS TRP ASP GLY MET SEQRES 16 D 345 ASN LEU ASP SER LEU TYR LEU VAL ALA ILE VAL TYR ARG SEQRES 17 D 345 THR ASP ILE LYS THR ILE ARG ASP LEU ARG TYR SER ASP SEQRES 18 D 345 ARG GLN TRP LEU ILE ASN LEU ASN ASN LYS ILE ARG SER SEQRES 19 D 345 ILE VAL PRO GLY CYS TYR ASN TYR ALA VAL HIS PRO ASP SEQRES 20 D 345 GLU LEU ARG ILE LEU VAL HIS TYR GLN PRO SER TYR TYR SEQRES 21 D 345 HIS PHE ASN ILE HIS ILE VAL ASN ILE LYS HIS PRO GLY SEQRES 22 D 345 LEU GLY ASN SER ILE ALA ALA GLY LYS ALA ILE LEU LEU SEQRES 23 D 345 GLU ASP ILE ILE GLU MET LEU ASN TYR LEU GLY PRO GLU SEQRES 24 D 345 GLY TYR MET ASN LYS THR ILE THR TYR ALA ILE GLY GLU SEQRES 25 D 345 ASN HIS ASP LEU TRP LYS ARG GLY LEU GLU GLU GLU LEU SEQRES 26 D 345 THR LYS GLN LEU GLU ARG ASP GLY ILE PRO LYS ILE PRO SEQRES 27 D 345 LYS ILE VAL ASN GLY PHE LYS HET M7G A 401 29 HET SO4 A 402 5 HET SO4 A 403 5 HET CL A 404 1 HET SO4 B 401 5 HET SO4 B 402 5 HET M7G C 401 29 HET SO4 C 402 5 HET CL C 403 1 HET SO4 D 401 5 HET SO4 D 402 5 HET CL D 403 1 HET CL D 404 1 HETNAM M7G 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 5 M7G 2(C11 H19 N5 O11 P2) FORMUL 6 SO4 7(O4 S 2-) FORMUL 8 CL 4(CL 1-) FORMUL 18 HOH *146(H2 O) HELIX 1 AA1 MET A 7 PHE A 15 1 9 HELIX 2 AA2 THR A 120 GLU A 128 1 9 HELIX 3 AA3 THR A 138 CYS A 154 1 17 HELIX 4 AA4 LEU A 159 GLU A 168 1 10 HELIX 5 AA5 GLU A 171 VAL A 175 5 5 HELIX 6 AA6 ASN A 201 SER A 204 5 4 HELIX 7 AA7 THR A 218 LEU A 222 5 5 HELIX 8 AA8 ARG A 223 SER A 225 5 3 HELIX 9 AA9 ASP A 226 TYR A 245 1 20 HELIX 10 AB1 HIS A 250 ASP A 252 5 3 HELIX 11 AB2 LEU A 291 LEU A 298 1 8 HELIX 12 AB3 GLU A 304 LYS A 309 5 6 HELIX 13 AB4 HIS A 319 ARG A 324 1 6 HELIX 14 AB5 GLY A 325 ASP A 337 1 13 HELIX 15 AB6 MET B 7 PHE B 15 1 9 HELIX 16 AB7 THR B 66 TYR B 70 5 5 HELIX 17 AB8 THR B 120 GLU B 128 1 9 HELIX 18 AB9 THR B 138 MET B 153 1 16 HELIX 19 AC1 VAL B 162 GLU B 168 1 7 HELIX 20 AC2 SER B 181 LYS B 185 5 5 HELIX 21 AC3 ASN B 201 SER B 204 5 4 HELIX 22 AC4 THR B 218 LEU B 222 5 5 HELIX 23 AC5 ARG B 223 SER B 225 5 3 HELIX 24 AC6 ASP B 226 TYR B 245 1 20 HELIX 25 AC7 HIS B 250 ASP B 252 5 3 HELIX 26 AC8 GLY B 280 ALA B 284 5 5 HELIX 27 AC9 LEU B 291 ASN B 299 1 9 HELIX 28 AD1 GLU B 304 LYS B 309 5 6 HELIX 29 AD2 HIS B 319 ARG B 324 1 6 HELIX 30 AD3 GLY B 325 GLY B 338 1 14 HELIX 31 AD4 MET C 7 PHE C 15 1 9 HELIX 32 AD5 THR C 120 GLU C 128 1 9 HELIX 33 AD6 THR C 138 GLU C 152 1 15 HELIX 34 AD7 LEU C 159 GLU C 168 1 10 HELIX 35 AD8 GLU C 171 VAL C 175 5 5 HELIX 36 AD9 SER C 181 ASP C 187 5 7 HELIX 37 AE1 ASN C 201 SER C 204 5 4 HELIX 38 AE2 THR C 218 LEU C 222 5 5 HELIX 39 AE3 ARG C 223 SER C 225 5 3 HELIX 40 AE4 ASP C 226 TYR C 245 1 20 HELIX 41 AE5 HIS C 250 ASP C 252 5 3 HELIX 42 AE6 LEU C 291 ASN C 299 1 9 HELIX 43 AE7 GLU C 304 LYS C 309 5 6 HELIX 44 AE8 HIS C 319 ARG C 324 1 6 HELIX 45 AE9 GLY C 325 ASP C 337 1 13 HELIX 46 AF1 MET D 7 PHE D 15 1 9 HELIX 47 AF2 THR D 120 GLU D 128 1 9 HELIX 48 AF3 THR D 138 MET D 153 1 16 HELIX 49 AF4 ASN D 163 GLU D 168 1 6 HELIX 50 AF5 SER D 181 LYS D 185 5 5 HELIX 51 AF6 ASN D 201 SER D 204 5 4 HELIX 52 AF7 THR D 218 LEU D 222 5 5 HELIX 53 AF8 ARG D 223 SER D 225 5 3 HELIX 54 AF9 ASP D 226 TYR D 245 1 20 HELIX 55 AG1 HIS D 250 ASP D 252 5 3 HELIX 56 AG2 GLY D 280 ALA D 284 5 5 HELIX 57 AG3 LEU D 291 LEU D 298 1 8 HELIX 58 AG4 GLU D 304 LYS D 309 5 6 HELIX 59 AG5 HIS D 319 ARG D 324 1 6 HELIX 60 AG6 GLY D 325 ASP D 337 1 13 SHEET 1 AA1 6 GLN A 16 ASN A 24 0 SHEET 2 AA1 6 VAL A 29 ILE A 36 -1 O LEU A 33 N SER A 19 SHEET 3 AA1 6 LYS A 39 LYS A 47 -1 O ILE A 43 N LEU A 32 SHEET 4 AA1 6 ALA A 111 ILE A 116 -1 O ASN A 114 N THR A 44 SHEET 5 AA1 6 TYR B 94 ILE B 101 -1 O TYR B 95 N LEU A 115 SHEET 6 AA1 6 ILE B 82 ASN B 91 -1 N ILE B 88 O TRP B 96 SHEET 1 AA2 6 ILE A 82 ASN A 91 0 SHEET 2 AA2 6 TYR A 94 ILE A 101 -1 O TRP A 96 N ILE A 88 SHEET 3 AA2 6 ALA B 111 ILE B 116 -1 O LEU B 115 N TYR A 95 SHEET 4 AA2 6 LYS B 39 LYS B 47 -1 N THR B 44 O ASN B 114 SHEET 5 AA2 6 VAL B 29 ILE B 36 -1 N LEU B 32 O ILE B 43 SHEET 6 AA2 6 GLN B 16 ASN B 24 -1 N SER B 19 O LEU B 33 SHEET 1 AA3 2 PHE A 132 GLU A 137 0 SHEET 2 AA3 2 ILE A 311 GLY A 316 -1 O TYR A 313 N VAL A 135 SHEET 1 AA4 6 TYR A 177 ASP A 179 0 SHEET 2 AA4 6 PHE A 189 PRO A 193 -1 O ILE A 191 N TYR A 177 SHEET 3 AA4 6 TYR A 206 VAL A 211 -1 O VAL A 208 N LEU A 192 SHEET 4 AA4 6 ASN A 268 ASN A 273 -1 O ILE A 271 N LEU A 207 SHEET 5 AA4 6 LEU A 254 HIS A 259 -1 N ARG A 255 O VAL A 272 SHEET 6 AA4 6 ALA A 288 LEU A 290 -1 O ILE A 289 N VAL A 258 SHEET 1 AA5 2 PHE B 132 GLU B 137 0 SHEET 2 AA5 2 ILE B 311 GLY B 316 -1 O TYR B 313 N VAL B 135 SHEET 1 AA6 6 TYR B 177 LYS B 178 0 SHEET 2 AA6 6 PHE B 189 PRO B 193 -1 O ILE B 191 N TYR B 177 SHEET 3 AA6 6 TYR B 206 VAL B 211 -1 O VAL B 208 N LEU B 192 SHEET 4 AA6 6 ASN B 268 ASN B 273 -1 O ILE B 271 N LEU B 207 SHEET 5 AA6 6 LEU B 254 HIS B 259 -1 N ARG B 255 O VAL B 272 SHEET 6 AA6 6 ALA B 288 LEU B 290 -1 O ILE B 289 N VAL B 258 SHEET 1 AA7 6 GLN C 16 ASN C 24 0 SHEET 2 AA7 6 VAL C 29 ILE C 36 -1 O LEU C 33 N SER C 19 SHEET 3 AA7 6 LYS C 39 LYS C 47 -1 O ILE C 43 N LEU C 32 SHEET 4 AA7 6 ALA C 111 ILE C 116 -1 O ASN C 114 N THR C 44 SHEET 5 AA7 6 TYR D 94 ILE D 101 -1 O TYR D 95 N LEU C 115 SHEET 6 AA7 6 ILE D 82 ASN D 91 -1 N ILE D 88 O TRP D 96 SHEET 1 AA8 2 THR C 55 VAL C 56 0 SHEET 2 AA8 2 PRO C 67 VAL C 68 -1 O VAL C 68 N THR C 55 SHEET 1 AA9 6 ILE C 82 ASN C 91 0 SHEET 2 AA9 6 TYR C 94 ILE C 101 -1 O TRP C 96 N ILE C 88 SHEET 3 AA9 6 ALA D 111 ILE D 116 -1 O LEU D 115 N TYR C 95 SHEET 4 AA9 6 LYS D 39 LYS D 47 -1 N THR D 44 O ASN D 114 SHEET 5 AA9 6 VAL D 29 ILE D 36 -1 N LEU D 32 O ILE D 43 SHEET 6 AA9 6 GLN D 16 ASN D 24 -1 N SER D 19 O LEU D 33 SHEET 1 AB1 2 PHE C 132 GLU C 137 0 SHEET 2 AB1 2 ILE C 311 GLY C 316 -1 O TYR C 313 N VAL C 135 SHEET 1 AB2 6 TYR C 177 ASP C 179 0 SHEET 2 AB2 6 PHE C 189 PRO C 193 -1 O PHE C 189 N ASP C 179 SHEET 3 AB2 6 TYR C 206 VAL C 211 -1 O VAL C 208 N LEU C 192 SHEET 4 AB2 6 ASN C 268 ASN C 273 -1 O ILE C 271 N LEU C 207 SHEET 5 AB2 6 LEU C 254 HIS C 259 -1 N ARG C 255 O VAL C 272 SHEET 6 AB2 6 ALA C 288 LEU C 290 -1 O ILE C 289 N VAL C 258 SHEET 1 AB3 2 PHE D 132 GLU D 137 0 SHEET 2 AB3 2 ILE D 311 GLY D 316 -1 O TYR D 313 N VAL D 135 SHEET 1 AB4 6 TYR D 177 LYS D 178 0 SHEET 2 AB4 6 PHE D 189 PRO D 193 -1 O ILE D 191 N TYR D 177 SHEET 3 AB4 6 TYR D 206 VAL D 211 -1 O VAL D 208 N LEU D 192 SHEET 4 AB4 6 ASN D 268 ASN D 273 -1 O ILE D 271 N LEU D 207 SHEET 5 AB4 6 LEU D 254 HIS D 259 -1 N ARG D 255 O VAL D 272 SHEET 6 AB4 6 ALA D 288 LEU D 290 -1 O ILE D 289 N VAL D 258 SSBOND 1 CYS A 72 CYS A 78 1555 1555 2.03 SSBOND 2 CYS B 72 CYS B 78 1555 1555 2.01 SSBOND 3 CYS C 72 CYS C 78 1555 1555 2.01 SSBOND 4 CYS D 72 CYS D 78 1555 1555 2.02 CISPEP 1 TRP A 117 PRO A 118 0 -7.05 CISPEP 2 TYR A 260 GLN A 261 0 -3.78 CISPEP 3 TRP B 117 PRO B 118 0 -2.01 CISPEP 4 TYR B 260 GLN B 261 0 -2.43 CISPEP 5 TRP C 117 PRO C 118 0 -4.12 CISPEP 6 TYR C 260 GLN C 261 0 -3.88 CISPEP 7 TRP D 117 PRO D 118 0 -0.49 CISPEP 8 TYR D 260 GLN D 261 0 -2.69 SITE 1 AC1 16 LYS A 126 TRP A 161 GLU A 171 PRO A 193 SITE 2 AC1 16 ASP A 194 MET A 195 LYS A 196 HIS A 259 SITE 3 AC1 16 PRO A 262 SER A 263 TYR A 264 HIS A 270 SITE 4 AC1 16 HOH A 532 ASN B 91 TYR B 94 TRP B 96 SITE 1 AC2 2 ASN A 281 SER A 282 SITE 1 AC3 7 ASN A 24 THR A 27 GLY A 280 HOH A 512 SITE 2 AC3 7 GLN B 26 HIS B 276 PRO B 277 SITE 1 AC4 4 LEU B 279 GLY B 280 ASN B 281 SER B 282 SITE 1 AC5 6 GLN B 130 PHE B 132 LYS B 287 ILE B 315 SITE 2 AC5 6 GLY B 316 HIS B 319 SITE 1 AC6 15 LYS C 126 TRP C 161 GLU C 171 PRO C 193 SITE 2 AC6 15 ASP C 194 MET C 195 LYS C 196 HIS C 259 SITE 3 AC6 15 PRO C 262 SER C 263 TYR C 264 HIS C 270 SITE 4 AC6 15 ASN D 91 TYR D 94 TRP D 96 SITE 1 AC7 4 GLY C 280 ASN C 281 SER C 282 HOH C 501 SITE 1 AC8 1 ARG C 336 SITE 1 AC9 3 GLY D 280 ASN D 281 SER D 282 SITE 1 AD1 6 GLN D 130 PHE D 132 LYS D 287 ILE D 315 SITE 2 AD1 6 GLY D 316 HIS D 319 SITE 1 AD2 1 ARG D 336 SITE 1 AD3 2 ASN C 24 PRO D 277 CRYST1 87.990 104.520 189.960 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005264 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.367595 -0.929849 0.015945 13.37316 1 MTRIX2 2 -0.929871 -0.367765 -0.009434 21.33419 1 MTRIX3 2 0.014636 -0.011359 -0.999828 116.02049 1 MTRIX1 3 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 3 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 3 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 4 0.365450 -0.930654 0.018135 13.27253 1 MTRIX2 4 -0.930711 -0.365646 -0.008928 21.30750 1 MTRIX3 4 0.014939 -0.013616 -0.999796 116.02985 1