HEADER TRANSFERASE 04-JUN-15 5BV6 TITLE PKG II'S CARBOXYL TERMINAL CYCLIC NUCLEOTIDE BINDING DOMAIN (CNB-B) IN TITLE 2 A COMPLEX WITH CGMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT PROTEIN KINASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 269-418; COMPND 5 SYNONYM: CGK2,CGMP-DEPENDENT PROTEIN KINASE II,CGKII; COMPND 6 EC: 2.7.11.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKG2, PRKGR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLIC GMP-DEPENDENT PROTEIN KINASE TYPE II, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.C.CAMPBELL,A.S.REGER,G.Y.HUANG,B.SANKARAN,J.J.KIM,C.W.KIM REVDAT 8 27-SEP-23 5BV6 1 LINK REVDAT 7 25-DEC-19 5BV6 1 REMARK REVDAT 6 11-OCT-17 5BV6 1 REMARK REVDAT 5 06-SEP-17 5BV6 1 JRNL REMARK REVDAT 4 23-MAR-16 5BV6 1 JRNL REVDAT 3 02-MAR-16 5BV6 1 TITLE AUTHOR REVDAT 2 27-JAN-16 5BV6 1 JRNL REVDAT 1 20-JAN-16 5BV6 0 JRNL AUTH J.C.CAMPBELL,J.J.KIM,K.Y.LI,G.Y.HUANG,A.S.REGER,S.MATSUDA, JRNL AUTH 2 B.SANKARAN,T.M.LINK,K.YUASA,J.E.LADBURY,D.E.CASTEEL,C.KIM JRNL TITL STRUCTURAL BASIS OF CYCLIC NUCLEOTIDE SELECTIVITY IN JRNL TITL 2 CGMP-DEPENDENT PROTEIN KINASE II. JRNL REF J.BIOL.CHEM. V. 291 5623 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26769964 JRNL DOI 10.1074/JBC.M115.691303 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 10870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7838 - 3.0809 1.00 2698 142 0.1581 0.1679 REMARK 3 2 3.0809 - 2.4455 1.00 2594 137 0.2013 0.2779 REMARK 3 3 2.4455 - 2.1364 1.00 2550 134 0.1931 0.2652 REMARK 3 4 2.1364 - 1.9400 0.98 2485 130 0.1977 0.2509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1235 REMARK 3 ANGLE : 1.177 1674 REMARK 3 CHIRALITY : 0.051 189 REMARK 3 PLANARITY : 0.004 217 REMARK 3 DIHEDRAL : 15.790 462 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 269:283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3772 -13.1081 -20.6827 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.2896 REMARK 3 T33: 0.3148 T12: -0.0066 REMARK 3 T13: 0.0404 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.1707 L22: 2.5712 REMARK 3 L33: 2.4985 L12: -0.2614 REMARK 3 L13: 0.0306 L23: 2.1661 REMARK 3 S TENSOR REMARK 3 S11: -0.2722 S12: 0.1480 S13: -0.5702 REMARK 3 S21: 0.1609 S22: 0.3004 S23: 0.9466 REMARK 3 S31: 0.0453 S32: -0.0669 S33: 0.0750 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 284:307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8753 -7.5742 -20.3633 REMARK 3 T TENSOR REMARK 3 T11: 0.1729 T22: 0.1535 REMARK 3 T33: 0.1283 T12: -0.0453 REMARK 3 T13: 0.0068 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.1496 L22: 2.7379 REMARK 3 L33: 4.2948 L12: 0.0064 REMARK 3 L13: 2.1826 L23: 0.5792 REMARK 3 S TENSOR REMARK 3 S11: -0.0886 S12: 0.1740 S13: 0.2046 REMARK 3 S21: 0.1850 S22: -0.1065 S23: -0.0962 REMARK 3 S31: 0.1710 S32: -0.0478 S33: 0.2187 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 308:322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2207 -8.0999 -5.8578 REMARK 3 T TENSOR REMARK 3 T11: 0.3204 T22: 0.2413 REMARK 3 T33: 0.2299 T12: 0.0667 REMARK 3 T13: -0.0607 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 3.5678 L22: 5.3695 REMARK 3 L33: 2.8257 L12: 0.1928 REMARK 3 L13: 1.7562 L23: -0.2289 REMARK 3 S TENSOR REMARK 3 S11: 0.1301 S12: -0.0231 S13: -0.0915 REMARK 3 S21: 0.6744 S22: 0.1361 S23: -0.8807 REMARK 3 S31: 0.6599 S32: 0.3160 S33: -0.0948 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 323:368 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6969 -1.1912 -4.2509 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.1803 REMARK 3 T33: 0.1647 T12: 0.0069 REMARK 3 T13: 0.0234 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 2.6644 L22: 4.0101 REMARK 3 L33: 4.1533 L12: 0.7029 REMARK 3 L13: 1.0324 L23: 0.7628 REMARK 3 S TENSOR REMARK 3 S11: 0.0468 S12: -0.1780 S13: 0.2232 REMARK 3 S21: 0.4708 S22: -0.1283 S23: 0.0051 REMARK 3 S31: 0.1642 S32: -0.1552 S33: 0.0645 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 369:382 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4186 -11.3037 -5.3935 REMARK 3 T TENSOR REMARK 3 T11: 0.4783 T22: 0.2636 REMARK 3 T33: 0.1610 T12: -0.0889 REMARK 3 T13: 0.0451 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.8623 L22: 3.1847 REMARK 3 L33: 1.1018 L12: 1.3728 REMARK 3 L13: 0.5224 L23: -1.3457 REMARK 3 S TENSOR REMARK 3 S11: 0.1630 S12: -0.2510 S13: 0.0917 REMARK 3 S21: 0.7470 S22: -0.1197 S23: 0.1954 REMARK 3 S31: 0.8230 S32: -0.5203 S33: -0.1033 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 383:394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5591 -0.6141 -23.7721 REMARK 3 T TENSOR REMARK 3 T11: 0.3133 T22: 0.4219 REMARK 3 T33: 0.2662 T12: -0.0744 REMARK 3 T13: 0.0405 T23: 0.1005 REMARK 3 L TENSOR REMARK 3 L11: 3.6292 L22: 8.0707 REMARK 3 L33: 5.4102 L12: -3.1390 REMARK 3 L13: 2.4876 L23: -0.7051 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: 0.9886 S13: 0.7727 REMARK 3 S21: -1.0321 S22: -0.0886 S23: 0.2994 REMARK 3 S31: -0.0501 S32: 0.0435 S33: 0.0765 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 395:418 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5327 9.2580 -8.5461 REMARK 3 T TENSOR REMARK 3 T11: 0.2794 T22: 0.2706 REMARK 3 T33: 0.5321 T12: 0.0655 REMARK 3 T13: 0.0106 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 5.0678 L22: 2.8077 REMARK 3 L33: 3.2318 L12: 1.4071 REMARK 3 L13: 3.3362 L23: -0.3094 REMARK 3 S TENSOR REMARK 3 S11: -0.1506 S12: 0.1829 S13: 0.6571 REMARK 3 S21: -0.0749 S22: -0.2717 S23: 0.3722 REMARK 3 S31: -0.4487 S32: 0.3139 S33: 0.3608 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10872 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 40.775 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: PDB ENTRY 4KU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM CACL2, 100 MM NAOAC, 30% MPD, PH REMARK 280 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.17200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.58350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.23950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.58350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.17200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.23950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 267 REMARK 465 SER A 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 271 CG CD OE1 NE2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS A 288 CD CE NZ REMARK 470 LYS A 297 CD CE NZ REMARK 470 LYS A 330 CE NZ REMARK 470 GLU A 385 CD OE1 OE2 REMARK 470 GLU A 395 CG CD OE1 OE2 REMARK 470 LYS A 399 NZ REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 470 LYS A 414 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 285 O HOH A 601 1.95 REMARK 500 OE1 GLU A 305 OH TYR A 307 2.05 REMARK 500 OE1 GLU A 402 O HOH A 602 2.07 REMARK 500 OE1 GLU A 318 O HOH A 603 2.15 REMARK 500 OH TYR A 307 O HOH A 604 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 627 O HOH A 687 3644 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 390 -74.99 -112.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 364 OD2 REMARK 620 2 HOH A 610 O 117.2 REMARK 620 3 HOH A 617 O 75.2 88.8 REMARK 620 4 HOH A 635 O 72.7 71.9 128.3 REMARK 620 5 HOH A 691 O 144.8 81.7 75.9 142.3 REMARK 620 6 HOH A 695 O 85.2 156.7 91.2 124.5 75.8 REMARK 620 7 HOH A 705 O 125.2 92.9 154.9 75.6 79.6 77.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 35G A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 505 DBREF 5BV6 A 269 418 UNP Q13237 KGP2_HUMAN 269 418 SEQADV 5BV6 GLY A 267 UNP Q13237 EXPRESSION TAG SEQADV 5BV6 SER A 268 UNP Q13237 EXPRESSION TAG SEQRES 1 A 152 GLY SER THR ALA GLN ALA ARG ASP GLU GLN TYR ARG ASN SEQRES 2 A 152 PHE LEU ARG SER VAL SER LEU LEU LYS ASN LEU PRO GLU SEQRES 3 A 152 ASP LYS LEU THR LYS ILE ILE ASP CYS LEU GLU VAL GLU SEQRES 4 A 152 TYR TYR ASP LYS GLY ASP TYR ILE ILE ARG GLU GLY GLU SEQRES 5 A 152 GLU GLY SER THR PHE PHE ILE LEU ALA LYS GLY LYS VAL SEQRES 6 A 152 LYS VAL THR GLN SER THR GLU GLY HIS ASP GLN PRO GLN SEQRES 7 A 152 LEU ILE LYS THR LEU GLN LYS GLY GLU TYR PHE GLY GLU SEQRES 8 A 152 LYS ALA LEU ILE SER ASP ASP VAL ARG SER ALA ASN ILE SEQRES 9 A 152 ILE ALA GLU GLU ASN ASP VAL ALA CYS LEU VAL ILE ASP SEQRES 10 A 152 ARG GLU THR PHE ASN GLN THR VAL GLY THR PHE GLU GLU SEQRES 11 A 152 LEU GLN LYS TYR LEU GLU GLY TYR VAL ALA ASN LEU ASN SEQRES 12 A 152 ARG ASP ASP GLU LYS ARG HIS ALA LYS HET 35G A 501 23 HET CA A 502 1 HET ACT A 503 4 HET CA A 504 1 HET NA A 505 1 HETNAM 35G GUANOSINE-3',5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM NA SODIUM ION FORMUL 2 35G C10 H12 N5 O7 P FORMUL 3 CA 2(CA 2+) FORMUL 4 ACT C2 H3 O2 1- FORMUL 6 NA NA 1+ FORMUL 7 HOH *105(H2 O) HELIX 1 AA1 THR A 269 VAL A 284 1 16 HELIX 2 AA2 SER A 285 LYS A 288 5 4 HELIX 3 AA3 PRO A 291 LEU A 302 1 12 HELIX 4 AA4 GLY A 356 ASP A 363 1 8 HELIX 5 AA5 ASP A 383 THR A 390 1 8 HELIX 6 AA6 PHE A 394 HIS A 416 1 23 SHEET 1 AA1 4 GLU A 303 TYR A 307 0 SHEET 2 AA1 4 VAL A 377 ILE A 382 -1 O VAL A 381 N GLU A 303 SHEET 3 AA1 4 PHE A 323 LYS A 328 -1 N ILE A 325 O LEU A 380 SHEET 4 AA1 4 TYR A 354 PHE A 355 -1 O PHE A 355 N PHE A 324 SHEET 1 AA2 4 TYR A 312 ILE A 314 0 SHEET 2 AA2 4 ASN A 369 ALA A 372 -1 O ILE A 370 N ILE A 313 SHEET 3 AA2 4 LYS A 330 GLN A 335 -1 N LYS A 332 O ILE A 371 SHEET 4 AA2 4 GLN A 344 GLN A 350 -1 O GLN A 344 N GLN A 335 LINK OD2 ASP A 364 CA CA A 502 1555 1555 2.44 LINK CA CA A 502 O HOH A 610 1555 3654 2.53 LINK CA CA A 502 O HOH A 617 1555 3654 2.56 LINK CA CA A 502 O HOH A 635 1555 3654 2.53 LINK CA CA A 502 O HOH A 691 1555 3654 2.54 LINK CA CA A 502 O HOH A 695 1555 1555 2.54 LINK CA CA A 502 O HOH A 705 1555 1555 2.51 LINK CA CA A 504 O HOH A 702 1555 1555 3.03 SITE 1 AC1 16 GLN A 335 LYS A 347 PHE A 355 GLY A 356 SITE 2 AC1 16 GLU A 357 LYS A 358 ALA A 359 ARG A 366 SITE 3 AC1 16 SER A 367 ALA A 368 ILE A 370 ASP A 412 SITE 4 AC1 16 ARG A 415 HOH A 608 HOH A 629 HOH A 636 SITE 1 AC2 7 ASP A 364 HOH A 610 HOH A 617 HOH A 635 SITE 2 AC2 7 HOH A 691 HOH A 695 HOH A 705 SITE 1 AC3 2 ASP A 300 LYS A 418 SITE 1 AC4 1 HOH A 702 SITE 1 AC5 3 GLU A 353 TYR A 354 TYR A 404 CRYST1 40.344 50.479 69.167 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024787 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014458 0.00000