HEADER TRANSFERASE 05-JUN-15 5BVK TITLE FRAGMENT-BASED DISCOVERY OF POTENT AND SELECTIVE DDR1/2 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 576-894; COMPND 5 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1,CD167 ANTIGEN-LIKE COMPND 6 FAMILY MEMBER A,CELL ADHESION KINASE,DISCOIDIN RECEPTOR TYROSINE COMPND 7 KINASE,HGK2,MAMMARY CARCINOMA KINASE 10,MCK-10,PROTEIN-TYROSINE COMPND 8 KINASE 3A,PROTEIN-TYROSINE KINASE RTK-6,TRK E,TYROSINE KINASE DDR, COMPND 9 TYROSINE-PROTEIN KINASE CAK; COMPND 10 EC: 2.7.10.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DDR1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MURRAY,V.BERDINI,I.BUCK,M.CARR,A.CLEASBY,J.COYLE,J.CURRY,J.DAY, AUTHOR 2 K.HEARN,A.IQBAL,L.LEE,V.MARTINS,P.MORTENSON,J.MUNCK,L.PAGE,S.PATEL, AUTHOR 3 S.ROOMANS,T.KIRSTEN,G.SAXTY REVDAT 1 05-AUG-15 5BVK 0 JRNL AUTH C.W.MURRAY,V.BERDINI,I.M.BUCK,M.E.CARR,A.CLEASBY,J.E.COYLE, JRNL AUTH 2 J.E.CURRY,J.E.DAY,P.J.DAY,K.HEARN,A.IQBAL,L.Y.LEE,V.MARTINS, JRNL AUTH 3 P.N.MORTENSON,J.M.MUNCK,L.W.PAGE,S.PATEL,S.ROOMANS,K.SMITH, JRNL AUTH 4 E.TAMANINI,G.SAXTY JRNL TITL FRAGMENT-BASED DISCOVERY OF POTENT AND SELECTIVE DDR1/2 JRNL TITL 2 INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 6 798 2015 JRNL REFN ISSN 1948-5875 JRNL PMID 26191369 JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00143 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 14992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1090 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2245 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.77000 REMARK 3 B22 (A**2) : 1.47000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.802 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2314 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 12 ; 0.004 ; 0.026 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3124 ; 1.506 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 25 ; 0.454 ; 1.080 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 275 ; 6.554 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;36.263 ;22.983 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 399 ;17.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;20.888 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 335 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1774 ; 0.000 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 10 ; 0.002 ; 0.051 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1109 ; 1.691 ; 4.352 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1205 ; 2.394 ; 5.032 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 604 A 703 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6573 41.2209 40.3218 REMARK 3 T TENSOR REMARK 3 T11: 0.3186 T22: 0.0858 REMARK 3 T33: 0.2500 T12: 0.0052 REMARK 3 T13: 0.0108 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.2032 L22: 2.3866 REMARK 3 L33: 5.9103 L12: -1.4699 REMARK 3 L13: 1.3620 L23: 2.3711 REMARK 3 S TENSOR REMARK 3 S11: -0.3947 S12: -0.0570 S13: 0.6799 REMARK 3 S21: -0.0382 S22: 0.1525 S23: -0.3180 REMARK 3 S31: -0.7010 S32: 0.1670 S33: 0.2421 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 704 A 911 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1124 18.9221 30.3852 REMARK 3 T TENSOR REMARK 3 T11: 0.0229 T22: 0.0069 REMARK 3 T33: 0.0082 T12: -0.0039 REMARK 3 T13: 0.0069 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.5014 L22: 2.7450 REMARK 3 L33: 3.1718 L12: 0.2184 REMARK 3 L13: 0.2616 L23: -1.3115 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: -0.1259 S13: -0.0027 REMARK 3 S21: -0.0731 S22: -0.0706 S23: -0.1291 REMARK 3 S31: 0.0219 S32: -0.0084 S33: -0.0033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 5BVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14992 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 52.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-25% (W/V) PEG3350, 0.2M NH4I, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.01300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.34100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.75250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.34100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.01300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.75250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 590 REMARK 465 ALA A 591 REMARK 465 MET A 592 REMARK 465 GLY A 593 REMARK 465 SER A 594 REMARK 465 ALA A 595 REMARK 465 VAL A 596 REMARK 465 GLY A 597 REMARK 465 ASP A 598 REMARK 465 GLY A 599 REMARK 465 PRO A 600 REMARK 465 PRO A 601 REMARK 465 ARG A 602 REMARK 465 VAL A 603 REMARK 465 PRO A 632 REMARK 465 GLN A 633 REMARK 465 ASP A 634 REMARK 465 LEU A 635 REMARK 465 VAL A 636 REMARK 465 SER A 637 REMARK 465 LEU A 638 REMARK 465 ASP A 639 REMARK 465 PHE A 640 REMARK 465 PRO A 641 REMARK 465 LEU A 642 REMARK 465 ASN A 643 REMARK 465 VAL A 644 REMARK 465 ARG A 645 REMARK 465 LYS A 646 REMARK 465 GLY A 647 REMARK 465 ALA A 722 REMARK 465 ALA A 723 REMARK 465 GLU A 724 REMARK 465 GLY A 725 REMARK 465 ALA A 726 REMARK 465 PRO A 727 REMARK 465 GLY A 728 REMARK 465 ASP A 729 REMARK 465 GLY A 730 REMARK 465 GLN A 731 REMARK 465 ALA A 732 REMARK 465 ALA A 733 REMARK 465 GLN A 734 REMARK 465 GLY A 735 REMARK 465 THR A 912 REMARK 465 VAL A 913 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 791 CA - CB - CG ANGL. DEV. = 19.1 DEGREES REMARK 500 LEU A 837 CA - CB - CG ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 693 -97.27 -42.96 REMARK 500 ARG A 765 -18.63 83.70 REMARK 500 ASP A 766 46.28 -141.77 REMARK 500 GLU A 776 143.76 50.26 REMARK 500 ASN A 777 78.30 -65.52 REMARK 500 GLU A 907 -64.35 -123.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4VC A 1007 DBREF 5BVK A 595 913 UNP Q08345 DDR1_HUMAN 576 894 SEQADV 5BVK GLY A 590 UNP Q08345 EXPRESSION TAG SEQADV 5BVK ALA A 591 UNP Q08345 EXPRESSION TAG SEQADV 5BVK MET A 592 UNP Q08345 EXPRESSION TAG SEQADV 5BVK GLY A 593 UNP Q08345 EXPRESSION TAG SEQADV 5BVK SER A 594 UNP Q08345 EXPRESSION TAG SEQRES 1 A 324 GLY ALA MET GLY SER ALA VAL GLY ASP GLY PRO PRO ARG SEQRES 2 A 324 VAL ASP PHE PRO ARG SER ARG LEU ARG PHE LYS GLU LYS SEQRES 3 A 324 LEU GLY GLU GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU SEQRES 4 A 324 VAL ASP SER PRO GLN ASP LEU VAL SER LEU ASP PHE PRO SEQRES 5 A 324 LEU ASN VAL ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL SEQRES 6 A 324 LYS ILE LEU ARG PRO ASP ALA THR LYS ASN ALA ARG ASN SEQRES 7 A 324 ASP PHE LEU LYS GLU VAL LYS ILE MET SER ARG LEU LYS SEQRES 8 A 324 ASP PRO ASN ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN SEQRES 9 A 324 ASP ASP PRO LEU CYS MET ILE THR ASP TYR MET GLU ASN SEQRES 10 A 324 GLY ASP LEU ASN GLN PHE LEU SER ALA HIS GLN LEU GLU SEQRES 11 A 324 ASP LYS ALA ALA GLU GLY ALA PRO GLY ASP GLY GLN ALA SEQRES 12 A 324 ALA GLN GLY PRO THR ILE SER TYR PRO MET LEU LEU HIS SEQRES 13 A 324 VAL ALA ALA GLN ILE ALA SER GLY MET ARG TYR LEU ALA SEQRES 14 A 324 THR LEU ASN PHE VAL HIS ARG ASP LEU ALA THR ARG ASN SEQRES 15 A 324 CYS LEU VAL GLY GLU ASN PHE THR ILE LYS ILE ALA ASP SEQRES 16 A 324 PHE GLY MET SER ARG ASN LEU TYR ALA GLY ASP TYR TYR SEQRES 17 A 324 ARG VAL GLN GLY ARG ALA VAL LEU PRO ILE ARG TRP MET SEQRES 18 A 324 ALA TRP GLU CYS ILE LEU MET GLY LYS PHE THR THR ALA SEQRES 19 A 324 SER ASP VAL TRP ALA PHE GLY VAL THR LEU TRP GLU VAL SEQRES 20 A 324 LEU MET LEU CYS ARG ALA GLN PRO PHE GLY GLN LEU THR SEQRES 21 A 324 ASP GLU GLN VAL ILE GLU ASN ALA GLY GLU PHE PHE ARG SEQRES 22 A 324 ASP GLN GLY ARG GLN VAL TYR LEU SER ARG PRO PRO ALA SEQRES 23 A 324 CYS PRO GLN GLY LEU TYR GLU LEU MET LEU ARG CYS TRP SEQRES 24 A 324 SER ARG GLU SER GLU GLN ARG PRO PRO PHE SER GLN LEU SEQRES 25 A 324 HIS ARG PHE LEU ALA GLU ASP ALA LEU ASN THR VAL HET IOD A1001 1 HET IOD A1002 1 HET IOD A1003 1 HET IOD A1004 1 HET IOD A1005 1 HET IOD A1006 1 HET 4VC A1007 30 HETNAM IOD IODIDE ION HETNAM 4VC 1-(2-CHLOROPHENYL)-3-(PYRIDIN-3-YLMETHYL)UREA FORMUL 2 IOD 6(I 1-) FORMUL 8 4VC C13 H12 CL N3 O FORMUL 9 HOH *113(H2 O) HELIX 1 AA1 PRO A 606 SER A 608 5 3 HELIX 2 AA2 THR A 662 ARG A 678 1 17 HELIX 3 AA3 ASP A 708 ALA A 715 1 8 HELIX 4 AA4 SER A 739 LEU A 760 1 22 HELIX 5 AA5 ALA A 768 ARG A 770 5 3 HELIX 6 AA6 MET A 787 TYR A 792 1 6 HELIX 7 AA7 ALA A 793 TYR A 796 5 4 HELIX 8 AA8 PRO A 806 MET A 810 5 5 HELIX 9 AA9 ALA A 811 GLY A 818 1 8 HELIX 10 AB1 THR A 821 MET A 838 1 18 HELIX 11 AB2 THR A 849 ASP A 863 1 15 HELIX 12 AB3 PRO A 877 TRP A 888 1 12 HELIX 13 AB4 GLU A 891 ARG A 895 5 5 HELIX 14 AB5 PRO A 897 GLU A 907 1 11 HELIX 15 AB6 ASP A 908 ASN A 911 5 4 SHEET 1 AA1 5 LEU A 610 GLU A 618 0 SHEET 2 AA1 5 GLY A 622 VAL A 629 -1 O VAL A 624 N LEU A 616 SHEET 3 AA1 5 LEU A 650 LEU A 657 -1 O VAL A 654 N HIS A 625 SHEET 4 AA1 5 CYS A 698 ASP A 702 -1 O THR A 701 N ALA A 653 SHEET 5 AA1 5 LEU A 687 CYS A 691 -1 N LEU A 688 O ILE A 700 SHEET 1 AA2 2 GLN A 717 LEU A 718 0 SHEET 2 AA2 2 THR A 737 ILE A 738 1 O ILE A 738 N GLN A 717 SHEET 1 AA3 2 CYS A 772 VAL A 774 0 SHEET 2 AA3 2 ILE A 780 ILE A 782 -1 O LYS A 781 N LEU A 773 CISPEP 1 ASP A 604 PHE A 605 0 -3.28 CISPEP 2 ASP A 695 PRO A 696 0 6.98 CISPEP 3 GLU A 776 ASN A 777 0 5.70 SITE 1 AC1 1 LEU A 883 SITE 1 AC2 4 GLN A 620 PHE A 621 GLY A 622 LYS A 655 SITE 1 AC3 1 HIS A 902 SITE 1 AC4 3 LYS A 655 GLY A 786 MET A 787 SITE 1 AC5 7 GLU A 672 MET A 676 LEU A 679 ILE A 685 SITE 2 AC5 7 THR A 701 ALA A 783 ASP A 784 CRYST1 62.026 71.505 76.682 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016122 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013041 0.00000