HEADER TRANSFERASE 05-JUN-15 5BVO TITLE FRAGMENT-BASED DISCOVERY OF POTENT AND SELECTIVE DDR1/2 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 576-894; COMPND 5 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1,CD167 ANTIGEN-LIKE COMPND 6 FAMILY MEMBER A,CELL ADHESION KINASE,DISCOIDIN RECEPTOR TYROSINE COMPND 7 KINASE,HGK2,MAMMARY CARCINOMA KINASE 10,MCK-10,PROTEIN-TYROSINE COMPND 8 KINASE 3A,PROTEIN-TYROSINE KINASE RTK-6,TRK E,TYROSINE KINASE DDR, COMPND 9 TYROSINE-PROTEIN KINASE CAK; COMPND 10 EC: 2.7.10.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS DDR1, FRAGMENTS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MURRAY,V.BERDINI,I.BUCK,M.CARR,A.CLEASBY,J.COYLE,J.CURRY,J.DAY, AUTHOR 2 K.HEARN,A.IQBAL,L.LEE,V.MARTINS,P.MORTENSON,J.MUNCK,L.PAGE,S.PATEL, AUTHOR 3 S.ROOMANS,T.KIRSTEN,G.SAXTY REVDAT 2 08-MAY-24 5BVO 1 REMARK REVDAT 1 05-AUG-15 5BVO 0 JRNL AUTH C.W.MURRAY,V.BERDINI,I.M.BUCK,M.E.CARR,A.CLEASBY,J.E.COYLE, JRNL AUTH 2 J.E.CURRY,J.E.DAY,P.J.DAY,K.HEARN,A.IQBAL,L.Y.LEE,V.MARTINS, JRNL AUTH 3 P.N.MORTENSON,J.M.MUNCK,L.W.PAGE,S.PATEL,S.ROOMANS,K.SMITH, JRNL AUTH 4 E.TAMANINI,G.SAXTY JRNL TITL FRAGMENT-BASED DISCOVERY OF POTENT AND SELECTIVE DDR1/2 JRNL TITL 2 INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 6 798 2015 JRNL REFN ISSN 1948-5875 JRNL PMID 26191369 JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00143 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 24693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1312 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2226 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.21000 REMARK 3 B22 (A**2) : 1.80000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.604 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2310 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 20 ; 0.003 ; 0.025 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3123 ; 1.410 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 41 ; 0.481 ; 1.171 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 5.826 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;35.013 ;23.009 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;14.954 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.104 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 335 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1766 ; 0.001 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 13 ; 0.005 ; 0.044 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 1.551 ; 4.249 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1210 ; 2.133 ; 4.802 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 604 A 703 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4395 43.5026 40.1535 REMARK 3 T TENSOR REMARK 3 T11: 0.4157 T22: 0.3584 REMARK 3 T33: 0.2986 T12: 0.0220 REMARK 3 T13: 0.0763 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 3.8549 L22: 2.9454 REMARK 3 L33: 3.4965 L12: -2.6466 REMARK 3 L13: 2.2814 L23: -0.0706 REMARK 3 S TENSOR REMARK 3 S11: -0.5426 S12: -0.3349 S13: 0.5978 REMARK 3 S21: 0.2082 S22: 0.4581 S23: -0.5432 REMARK 3 S31: -0.7881 S32: 0.0627 S33: 0.0845 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 704 A 911 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3689 21.2351 30.1170 REMARK 3 T TENSOR REMARK 3 T11: 0.0106 T22: 0.3092 REMARK 3 T33: 0.0077 T12: 0.0171 REMARK 3 T13: -0.0004 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.9797 L22: 2.2789 REMARK 3 L33: 2.1627 L12: 0.6542 REMARK 3 L13: 0.0368 L23: -0.8309 REMARK 3 S TENSOR REMARK 3 S11: 0.0926 S12: 0.1031 S13: -0.1077 REMARK 3 S21: -0.0882 S22: -0.0156 S23: -0.0258 REMARK 3 S31: -0.0079 S32: -0.1994 S33: -0.0770 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 5BVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24693 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 78.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.4%W/V PEG 3350, 0.2M NH4I, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.96050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.86600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.86600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.96050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 590 REMARK 465 ALA A 591 REMARK 465 MET A 592 REMARK 465 GLY A 593 REMARK 465 SER A 594 REMARK 465 ALA A 595 REMARK 465 VAL A 596 REMARK 465 GLY A 597 REMARK 465 ASP A 598 REMARK 465 GLY A 599 REMARK 465 PRO A 600 REMARK 465 PRO A 601 REMARK 465 ARG A 602 REMARK 465 VAL A 603 REMARK 465 GLY A 619 REMARK 465 GLN A 620 REMARK 465 PRO A 632 REMARK 465 GLN A 633 REMARK 465 ASP A 634 REMARK 465 LEU A 635 REMARK 465 VAL A 636 REMARK 465 SER A 637 REMARK 465 LEU A 638 REMARK 465 ASP A 639 REMARK 465 PHE A 640 REMARK 465 PRO A 641 REMARK 465 LEU A 642 REMARK 465 ASN A 643 REMARK 465 VAL A 644 REMARK 465 ARG A 645 REMARK 465 LYS A 646 REMARK 465 GLY A 647 REMARK 465 ALA A 722 REMARK 465 ALA A 723 REMARK 465 GLU A 724 REMARK 465 GLY A 725 REMARK 465 ALA A 726 REMARK 465 PRO A 727 REMARK 465 GLY A 728 REMARK 465 ASP A 729 REMARK 465 GLY A 730 REMARK 465 GLN A 731 REMARK 465 ALA A 732 REMARK 465 ALA A 733 REMARK 465 GLN A 734 REMARK 465 GLY A 735 REMARK 465 THR A 912 REMARK 465 VAL A 913 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 621 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 606 99.50 -60.10 REMARK 500 PRO A 649 46.24 -78.26 REMARK 500 ARG A 765 -11.33 82.06 REMARK 500 ASP A 766 44.75 -149.58 REMARK 500 GLU A 907 -68.37 -126.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1361 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1362 DISTANCE = 6.08 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4VE A 1008 DBREF 5BVO A 595 913 UNP Q08345 DDR1_HUMAN 576 894 SEQADV 5BVO GLY A 590 UNP Q08345 EXPRESSION TAG SEQADV 5BVO ALA A 591 UNP Q08345 EXPRESSION TAG SEQADV 5BVO MET A 592 UNP Q08345 EXPRESSION TAG SEQADV 5BVO GLY A 593 UNP Q08345 EXPRESSION TAG SEQADV 5BVO SER A 594 UNP Q08345 EXPRESSION TAG SEQRES 1 A 324 GLY ALA MET GLY SER ALA VAL GLY ASP GLY PRO PRO ARG SEQRES 2 A 324 VAL ASP PHE PRO ARG SER ARG LEU ARG PHE LYS GLU LYS SEQRES 3 A 324 LEU GLY GLU GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU SEQRES 4 A 324 VAL ASP SER PRO GLN ASP LEU VAL SER LEU ASP PHE PRO SEQRES 5 A 324 LEU ASN VAL ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL SEQRES 6 A 324 LYS ILE LEU ARG PRO ASP ALA THR LYS ASN ALA ARG ASN SEQRES 7 A 324 ASP PHE LEU LYS GLU VAL LYS ILE MET SER ARG LEU LYS SEQRES 8 A 324 ASP PRO ASN ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN SEQRES 9 A 324 ASP ASP PRO LEU CYS MET ILE THR ASP TYR MET GLU ASN SEQRES 10 A 324 GLY ASP LEU ASN GLN PHE LEU SER ALA HIS GLN LEU GLU SEQRES 11 A 324 ASP LYS ALA ALA GLU GLY ALA PRO GLY ASP GLY GLN ALA SEQRES 12 A 324 ALA GLN GLY PRO THR ILE SER TYR PRO MET LEU LEU HIS SEQRES 13 A 324 VAL ALA ALA GLN ILE ALA SER GLY MET ARG TYR LEU ALA SEQRES 14 A 324 THR LEU ASN PHE VAL HIS ARG ASP LEU ALA THR ARG ASN SEQRES 15 A 324 CYS LEU VAL GLY GLU ASN PHE THR ILE LYS ILE ALA ASP SEQRES 16 A 324 PHE GLY MET SER ARG ASN LEU TYR ALA GLY ASP TYR TYR SEQRES 17 A 324 ARG VAL GLN GLY ARG ALA VAL LEU PRO ILE ARG TRP MET SEQRES 18 A 324 ALA TRP GLU CYS ILE LEU MET GLY LYS PHE THR THR ALA SEQRES 19 A 324 SER ASP VAL TRP ALA PHE GLY VAL THR LEU TRP GLU VAL SEQRES 20 A 324 LEU MET LEU CYS ARG ALA GLN PRO PHE GLY GLN LEU THR SEQRES 21 A 324 ASP GLU GLN VAL ILE GLU ASN ALA GLY GLU PHE PHE ARG SEQRES 22 A 324 ASP GLN GLY ARG GLN VAL TYR LEU SER ARG PRO PRO ALA SEQRES 23 A 324 CYS PRO GLN GLY LEU TYR GLU LEU MET LEU ARG CYS TRP SEQRES 24 A 324 SER ARG GLU SER GLU GLN ARG PRO PRO PHE SER GLN LEU SEQRES 25 A 324 HIS ARG PHE LEU ALA GLU ASP ALA LEU ASN THR VAL HET IOD A1001 1 HET IOD A1002 1 HET IOD A1003 1 HET IOD A1004 1 HET IOD A1005 1 HET IOD A1006 1 HET IOD A1007 1 HET 4VE A1008 52 HETNAM IOD IODIDE ION HETNAM 4VE N-(5-{(1S)-1-[(5-FLUORO-1,3-BENZOXAZOL-2-YL) HETNAM 2 4VE AMINO]ETHYL}-2-METHYLPHENYL)IMIDAZO[1,2-A]PYRIDINE-3- HETNAM 3 4VE CARBOXAMIDE FORMUL 2 IOD 7(I 1-) FORMUL 9 4VE C24 H20 F N5 O2 FORMUL 10 HOH *262(H2 O) HELIX 1 AA1 PRO A 606 SER A 608 5 3 HELIX 2 AA2 THR A 662 ARG A 678 1 17 HELIX 3 AA3 ASP A 708 ALA A 715 1 8 HELIX 4 AA4 SER A 739 LEU A 760 1 22 HELIX 5 AA5 ALA A 768 ARG A 770 5 3 HELIX 6 AA6 GLU A 776 PHE A 778 5 3 HELIX 7 AA7 ARG A 789 TYR A 796 5 8 HELIX 8 AA8 PRO A 806 MET A 810 5 5 HELIX 9 AA9 ALA A 811 GLY A 818 1 8 HELIX 10 AB1 THR A 821 MET A 838 1 18 HELIX 11 AB2 THR A 849 ASP A 863 1 15 HELIX 12 AB3 PRO A 877 TRP A 888 1 12 HELIX 13 AB4 GLU A 891 ARG A 895 5 5 HELIX 14 AB5 PRO A 897 GLU A 907 1 11 HELIX 15 AB6 ASP A 908 ASN A 911 5 4 SHEET 1 AA1 5 LEU A 610 GLY A 617 0 SHEET 2 AA1 5 GLY A 622 VAL A 629 -1 O VAL A 624 N LEU A 616 SHEET 3 AA1 5 LEU A 650 LEU A 657 -1 O VAL A 654 N HIS A 625 SHEET 4 AA1 5 CYS A 698 ASP A 702 -1 O MET A 699 N LYS A 655 SHEET 5 AA1 5 LEU A 687 CYS A 691 -1 N LEU A 688 O ILE A 700 SHEET 1 AA2 2 GLN A 717 LEU A 718 0 SHEET 2 AA2 2 THR A 737 ILE A 738 1 O ILE A 738 N GLN A 717 SHEET 1 AA3 2 CYS A 772 VAL A 774 0 SHEET 2 AA3 2 ILE A 780 ILE A 782 -1 O LYS A 781 N LEU A 773 CISPEP 1 ASP A 604 PHE A 605 0 -15.85 CISPEP 2 ASP A 695 PRO A 696 0 -0.89 SITE 1 AC1 1 GLN A 900 SITE 1 AC2 2 GLY A 622 VAL A 624 SITE 1 AC3 4 ASP A 681 PRO A 682 ARG A 686 HOH A1307 SITE 1 AC4 1 HIS A 902 SITE 1 AC5 2 PRO A 659 SER A 739 SITE 1 AC6 2 GLY A 617 GLU A 618 SITE 1 AC7 14 ALA A 653 LYS A 655 GLU A 672 MET A 676 SITE 2 AC7 14 LEU A 679 ILE A 685 THR A 701 ASP A 702 SITE 3 AC7 14 MET A 704 PHE A 762 LEU A 773 ALA A 783 SITE 4 AC7 14 ASP A 784 PHE A 785 CRYST1 61.921 78.360 75.732 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016150 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013204 0.00000