HEADER TRANSFERASE 05-JUN-15 5BVO
TITLE FRAGMENT-BASED DISCOVERY OF POTENT AND SELECTIVE DDR1/2 INHIBITORS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 576-894;
COMPND 5 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1,CD167 ANTIGEN-LIKE
COMPND 6 FAMILY MEMBER A,CELL ADHESION KINASE,DISCOIDIN RECEPTOR TYROSINE
COMPND 7 KINASE,HGK2,MAMMARY CARCINOMA KINASE 10,MCK-10,PROTEIN-TYROSINE
COMPND 8 KINASE 3A,PROTEIN-TYROSINE KINASE RTK-6,TRK E,TYROSINE KINASE DDR,
COMPND 9 TYROSINE-PROTEIN KINASE CAK;
COMPND 10 EC: 2.7.10.1;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108
KEYWDS DDR1, FRAGMENTS, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.MURRAY,V.BERDINI,I.BUCK,M.CARR,A.CLEASBY,J.COYLE,J.CURRY,J.DAY,
AUTHOR 2 K.HEARN,A.IQBAL,L.LEE,V.MARTINS,P.MORTENSON,J.MUNCK,L.PAGE,S.PATEL,
AUTHOR 3 S.ROOMANS,T.KIRSTEN,G.SAXTY
REVDAT 2 08-MAY-24 5BVO 1 REMARK
REVDAT 1 05-AUG-15 5BVO 0
JRNL AUTH C.W.MURRAY,V.BERDINI,I.M.BUCK,M.E.CARR,A.CLEASBY,J.E.COYLE,
JRNL AUTH 2 J.E.CURRY,J.E.DAY,P.J.DAY,K.HEARN,A.IQBAL,L.Y.LEE,V.MARTINS,
JRNL AUTH 3 P.N.MORTENSON,J.M.MUNCK,L.W.PAGE,S.PATEL,S.ROOMANS,K.SMITH,
JRNL AUTH 4 E.TAMANINI,G.SAXTY
JRNL TITL FRAGMENT-BASED DISCOVERY OF POTENT AND SELECTIVE DDR1/2
JRNL TITL 2 INHIBITORS.
JRNL REF ACS MED.CHEM.LETT. V. 6 798 2015
JRNL REFN ISSN 1948-5875
JRNL PMID 26191369
JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00143
REMARK 2
REMARK 2 RESOLUTION. 1.98 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0107
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.58
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8
REMARK 3 NUMBER OF REFLECTIONS : 24693
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.197
REMARK 3 R VALUE (WORKING SET) : 0.195
REMARK 3 FREE R VALUE : 0.246
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1312
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1758
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.84
REMARK 3 BIN R VALUE (WORKING SET) : 0.3020
REMARK 3 BIN FREE R VALUE SET COUNT : 86
REMARK 3 BIN FREE R VALUE : 0.3070
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2226
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 39
REMARK 3 SOLVENT ATOMS : 262
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.13
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -2.21000
REMARK 3 B22 (A**2) : 1.80000
REMARK 3 B33 (A**2) : 0.42000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.164
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.604
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2310 ; 0.011 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 20 ; 0.003 ; 0.025
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3123 ; 1.410 ; 1.952
REMARK 3 BOND ANGLES OTHERS (DEGREES): 41 ; 0.481 ; 1.171
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 5.826 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;35.013 ;23.009
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;14.954 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.104 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 335 ; 0.096 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1766 ; 0.001 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 13 ; 0.005 ; 0.044
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 1.551 ; 4.249
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1210 ; 2.133 ; 4.802
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 604 A 703
REMARK 3 ORIGIN FOR THE GROUP (A): 26.4395 43.5026 40.1535
REMARK 3 T TENSOR
REMARK 3 T11: 0.4157 T22: 0.3584
REMARK 3 T33: 0.2986 T12: 0.0220
REMARK 3 T13: 0.0763 T23: -0.0147
REMARK 3 L TENSOR
REMARK 3 L11: 3.8549 L22: 2.9454
REMARK 3 L33: 3.4965 L12: -2.6466
REMARK 3 L13: 2.2814 L23: -0.0706
REMARK 3 S TENSOR
REMARK 3 S11: -0.5426 S12: -0.3349 S13: 0.5978
REMARK 3 S21: 0.2082 S22: 0.4581 S23: -0.5432
REMARK 3 S31: -0.7881 S32: 0.0627 S33: 0.0845
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 704 A 911
REMARK 3 ORIGIN FOR THE GROUP (A): 14.3689 21.2351 30.1170
REMARK 3 T TENSOR
REMARK 3 T11: 0.0106 T22: 0.3092
REMARK 3 T33: 0.0077 T12: 0.0171
REMARK 3 T13: -0.0004 T23: 0.0055
REMARK 3 L TENSOR
REMARK 3 L11: 2.9797 L22: 2.2789
REMARK 3 L33: 2.1627 L12: 0.6542
REMARK 3 L13: 0.0368 L23: -0.8309
REMARK 3 S TENSOR
REMARK 3 S11: 0.0926 S12: 0.1031 S13: -0.1077
REMARK 3 S21: -0.0882 S22: -0.0156 S23: -0.0258
REMARK 3 S31: -0.0079 S32: -0.1994 S33: -0.0770
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS
REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT
REMARK 4
REMARK 4 5BVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-15.
REMARK 100 THE DEPOSITION ID IS D_1000210614.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-MAY-12
REMARK 200 TEMPERATURE (KELVIN) : 93
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.92
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24693
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980
REMARK 200 RESOLUTION RANGE LOW (A) : 78.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0
REMARK 200 DATA REDUNDANCY : 6.600
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 51.22
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 17.4%W/V PEG 3350, 0.2M NH4I, VAPOR
REMARK 280 DIFFUSION, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.96050
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.86600
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.18000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.86600
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.96050
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.18000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 14310 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 590
REMARK 465 ALA A 591
REMARK 465 MET A 592
REMARK 465 GLY A 593
REMARK 465 SER A 594
REMARK 465 ALA A 595
REMARK 465 VAL A 596
REMARK 465 GLY A 597
REMARK 465 ASP A 598
REMARK 465 GLY A 599
REMARK 465 PRO A 600
REMARK 465 PRO A 601
REMARK 465 ARG A 602
REMARK 465 VAL A 603
REMARK 465 GLY A 619
REMARK 465 GLN A 620
REMARK 465 PRO A 632
REMARK 465 GLN A 633
REMARK 465 ASP A 634
REMARK 465 LEU A 635
REMARK 465 VAL A 636
REMARK 465 SER A 637
REMARK 465 LEU A 638
REMARK 465 ASP A 639
REMARK 465 PHE A 640
REMARK 465 PRO A 641
REMARK 465 LEU A 642
REMARK 465 ASN A 643
REMARK 465 VAL A 644
REMARK 465 ARG A 645
REMARK 465 LYS A 646
REMARK 465 GLY A 647
REMARK 465 ALA A 722
REMARK 465 ALA A 723
REMARK 465 GLU A 724
REMARK 465 GLY A 725
REMARK 465 ALA A 726
REMARK 465 PRO A 727
REMARK 465 GLY A 728
REMARK 465 ASP A 729
REMARK 465 GLY A 730
REMARK 465 GLN A 731
REMARK 465 ALA A 732
REMARK 465 ALA A 733
REMARK 465 GLN A 734
REMARK 465 GLY A 735
REMARK 465 THR A 912
REMARK 465 VAL A 913
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 PHE A 621 CG CD1 CD2 CE1 CE2 CZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 606 99.50 -60.10
REMARK 500 PRO A 649 46.24 -78.26
REMARK 500 ARG A 765 -11.33 82.06
REMARK 500 ASP A 766 44.75 -149.58
REMARK 500 GLU A 907 -68.37 -126.30
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A1361 DISTANCE = 5.92 ANGSTROMS
REMARK 525 HOH A1362 DISTANCE = 6.08 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1002
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1003
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1004
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1005
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1006
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1007
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 4VE A 1008
DBREF 5BVO A 595 913 UNP Q08345 DDR1_HUMAN 576 894
SEQADV 5BVO GLY A 590 UNP Q08345 EXPRESSION TAG
SEQADV 5BVO ALA A 591 UNP Q08345 EXPRESSION TAG
SEQADV 5BVO MET A 592 UNP Q08345 EXPRESSION TAG
SEQADV 5BVO GLY A 593 UNP Q08345 EXPRESSION TAG
SEQADV 5BVO SER A 594 UNP Q08345 EXPRESSION TAG
SEQRES 1 A 324 GLY ALA MET GLY SER ALA VAL GLY ASP GLY PRO PRO ARG
SEQRES 2 A 324 VAL ASP PHE PRO ARG SER ARG LEU ARG PHE LYS GLU LYS
SEQRES 3 A 324 LEU GLY GLU GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU
SEQRES 4 A 324 VAL ASP SER PRO GLN ASP LEU VAL SER LEU ASP PHE PRO
SEQRES 5 A 324 LEU ASN VAL ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL
SEQRES 6 A 324 LYS ILE LEU ARG PRO ASP ALA THR LYS ASN ALA ARG ASN
SEQRES 7 A 324 ASP PHE LEU LYS GLU VAL LYS ILE MET SER ARG LEU LYS
SEQRES 8 A 324 ASP PRO ASN ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN
SEQRES 9 A 324 ASP ASP PRO LEU CYS MET ILE THR ASP TYR MET GLU ASN
SEQRES 10 A 324 GLY ASP LEU ASN GLN PHE LEU SER ALA HIS GLN LEU GLU
SEQRES 11 A 324 ASP LYS ALA ALA GLU GLY ALA PRO GLY ASP GLY GLN ALA
SEQRES 12 A 324 ALA GLN GLY PRO THR ILE SER TYR PRO MET LEU LEU HIS
SEQRES 13 A 324 VAL ALA ALA GLN ILE ALA SER GLY MET ARG TYR LEU ALA
SEQRES 14 A 324 THR LEU ASN PHE VAL HIS ARG ASP LEU ALA THR ARG ASN
SEQRES 15 A 324 CYS LEU VAL GLY GLU ASN PHE THR ILE LYS ILE ALA ASP
SEQRES 16 A 324 PHE GLY MET SER ARG ASN LEU TYR ALA GLY ASP TYR TYR
SEQRES 17 A 324 ARG VAL GLN GLY ARG ALA VAL LEU PRO ILE ARG TRP MET
SEQRES 18 A 324 ALA TRP GLU CYS ILE LEU MET GLY LYS PHE THR THR ALA
SEQRES 19 A 324 SER ASP VAL TRP ALA PHE GLY VAL THR LEU TRP GLU VAL
SEQRES 20 A 324 LEU MET LEU CYS ARG ALA GLN PRO PHE GLY GLN LEU THR
SEQRES 21 A 324 ASP GLU GLN VAL ILE GLU ASN ALA GLY GLU PHE PHE ARG
SEQRES 22 A 324 ASP GLN GLY ARG GLN VAL TYR LEU SER ARG PRO PRO ALA
SEQRES 23 A 324 CYS PRO GLN GLY LEU TYR GLU LEU MET LEU ARG CYS TRP
SEQRES 24 A 324 SER ARG GLU SER GLU GLN ARG PRO PRO PHE SER GLN LEU
SEQRES 25 A 324 HIS ARG PHE LEU ALA GLU ASP ALA LEU ASN THR VAL
HET IOD A1001 1
HET IOD A1002 1
HET IOD A1003 1
HET IOD A1004 1
HET IOD A1005 1
HET IOD A1006 1
HET IOD A1007 1
HET 4VE A1008 52
HETNAM IOD IODIDE ION
HETNAM 4VE N-(5-{(1S)-1-[(5-FLUORO-1,3-BENZOXAZOL-2-YL)
HETNAM 2 4VE AMINO]ETHYL}-2-METHYLPHENYL)IMIDAZO[1,2-A]PYRIDINE-3-
HETNAM 3 4VE CARBOXAMIDE
FORMUL 2 IOD 7(I 1-)
FORMUL 9 4VE C24 H20 F N5 O2
FORMUL 10 HOH *262(H2 O)
HELIX 1 AA1 PRO A 606 SER A 608 5 3
HELIX 2 AA2 THR A 662 ARG A 678 1 17
HELIX 3 AA3 ASP A 708 ALA A 715 1 8
HELIX 4 AA4 SER A 739 LEU A 760 1 22
HELIX 5 AA5 ALA A 768 ARG A 770 5 3
HELIX 6 AA6 GLU A 776 PHE A 778 5 3
HELIX 7 AA7 ARG A 789 TYR A 796 5 8
HELIX 8 AA8 PRO A 806 MET A 810 5 5
HELIX 9 AA9 ALA A 811 GLY A 818 1 8
HELIX 10 AB1 THR A 821 MET A 838 1 18
HELIX 11 AB2 THR A 849 ASP A 863 1 15
HELIX 12 AB3 PRO A 877 TRP A 888 1 12
HELIX 13 AB4 GLU A 891 ARG A 895 5 5
HELIX 14 AB5 PRO A 897 GLU A 907 1 11
HELIX 15 AB6 ASP A 908 ASN A 911 5 4
SHEET 1 AA1 5 LEU A 610 GLY A 617 0
SHEET 2 AA1 5 GLY A 622 VAL A 629 -1 O VAL A 624 N LEU A 616
SHEET 3 AA1 5 LEU A 650 LEU A 657 -1 O VAL A 654 N HIS A 625
SHEET 4 AA1 5 CYS A 698 ASP A 702 -1 O MET A 699 N LYS A 655
SHEET 5 AA1 5 LEU A 687 CYS A 691 -1 N LEU A 688 O ILE A 700
SHEET 1 AA2 2 GLN A 717 LEU A 718 0
SHEET 2 AA2 2 THR A 737 ILE A 738 1 O ILE A 738 N GLN A 717
SHEET 1 AA3 2 CYS A 772 VAL A 774 0
SHEET 2 AA3 2 ILE A 780 ILE A 782 -1 O LYS A 781 N LEU A 773
CISPEP 1 ASP A 604 PHE A 605 0 -15.85
CISPEP 2 ASP A 695 PRO A 696 0 -0.89
SITE 1 AC1 1 GLN A 900
SITE 1 AC2 2 GLY A 622 VAL A 624
SITE 1 AC3 4 ASP A 681 PRO A 682 ARG A 686 HOH A1307
SITE 1 AC4 1 HIS A 902
SITE 1 AC5 2 PRO A 659 SER A 739
SITE 1 AC6 2 GLY A 617 GLU A 618
SITE 1 AC7 14 ALA A 653 LYS A 655 GLU A 672 MET A 676
SITE 2 AC7 14 LEU A 679 ILE A 685 THR A 701 ASP A 702
SITE 3 AC7 14 MET A 704 PHE A 762 LEU A 773 ALA A 783
SITE 4 AC7 14 ASP A 784 PHE A 785
CRYST1 61.921 78.360 75.732 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016150 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012762 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013204 0.00000