HEADER HYDROLASE 08-JUN-15 5BWL TITLE CRYSTAL STRUCTURE OF SIRT5 IN COMPLEX WITH A COUMARIN-LABELLED TITLE 2 SUCCINYL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 33-302; COMPND 5 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 5,SIR2-LIKE PROTEIN 5; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COUMARIN-LABELLED SUCCINYL PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT5, SIR2L5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.GAI,H.JIANG,D.LIU REVDAT 2 08-NOV-23 5BWL 1 REMARK REVDAT 1 13-JUL-16 5BWL 0 JRNL AUTH W.GAI,H.JIANG,D.LIU JRNL TITL CRYSTAL STRUCTURE OF SIRT5 IN COMPLEX WITH A JRNL TITL 2 COUMARIN-LABELLED SUCCINYL PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 42745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0797 - 3.7292 0.83 2668 131 0.2176 0.2236 REMARK 3 2 3.7292 - 2.9605 0.91 2775 136 0.1953 0.2022 REMARK 3 3 2.9605 - 2.5864 0.99 2983 146 0.1975 0.2128 REMARK 3 4 2.5864 - 2.3499 1.00 2979 146 0.1953 0.2490 REMARK 3 5 2.3499 - 2.1815 0.97 2921 144 0.2067 0.2346 REMARK 3 6 2.1815 - 2.0529 0.99 2932 143 0.2133 0.2030 REMARK 3 7 2.0529 - 1.9501 1.00 2973 145 0.2093 0.2385 REMARK 3 8 1.9501 - 1.8652 0.99 2942 143 0.2572 0.3044 REMARK 3 9 1.8652 - 1.7934 1.00 2937 144 0.2214 0.2998 REMARK 3 10 1.7934 - 1.7316 1.00 2964 145 0.2293 0.2621 REMARK 3 11 1.7316 - 1.6774 1.00 2940 145 0.2222 0.2853 REMARK 3 12 1.6774 - 1.6295 1.00 2912 142 0.2332 0.2788 REMARK 3 13 1.6295 - 1.5866 1.00 2932 145 0.2360 0.2695 REMARK 3 14 1.5866 - 1.5479 0.97 2891 141 0.2488 0.3064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2146 REMARK 3 ANGLE : 1.403 2897 REMARK 3 CHIRALITY : 0.072 310 REMARK 3 PLANARITY : 0.011 382 REMARK 3 DIHEDRAL : 10.371 1707 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BWL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : M REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43833 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.548 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.590 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2NYR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS (PH 6.5), 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 21.21000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.34000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 21.21000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.34000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 GLY A 25 REMARK 465 LEU A 26 REMARK 465 VAL A 27 REMARK 465 PRO A 28 REMARK 465 ARG A 29 REMARK 465 GLY A 30 REMARK 465 SER A 31 REMARK 465 HIS A 32 REMARK 465 MET A 33 REMARK 465 ALA A 34 REMARK 465 ARG A 35 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 165 O HOH A 503 1.27 REMARK 500 HH22 ARG A 267 O HOH A 504 1.32 REMARK 500 O HOH A 753 O HOH A 779 1.84 REMARK 500 O HOH A 692 O HOH A 745 1.90 REMARK 500 O HOH A 545 O HOH A 589 1.90 REMARK 500 O HOH A 707 O HOH A 816 1.92 REMARK 500 O HOH A 661 O HOH A 788 1.93 REMARK 500 O HOH A 845 O HOH A 850 1.95 REMARK 500 O SLL B 3 O HOH B 201 1.96 REMARK 500 O THR A 295 O HOH A 501 2.00 REMARK 500 N LEU A 85 O HOH A 502 2.01 REMARK 500 O HOH A 602 O HOH A 770 2.02 REMARK 500 O HOH A 699 O HOH A 856 2.02 REMARK 500 NH1 ARG A 165 O HOH A 503 2.06 REMARK 500 O HOH A 867 O HOH A 870 2.08 REMARK 500 O HOH A 773 O HOH A 848 2.09 REMARK 500 O HOH A 870 O HOH A 872 2.09 REMARK 500 NH2 ARG A 267 O HOH A 504 2.09 REMARK 500 O HOH A 523 O HOH A 705 2.10 REMARK 500 O HOH A 531 O HOH A 669 2.10 REMARK 500 O HOH A 713 O HOH A 742 2.11 REMARK 500 O HOH A 791 O HOH A 824 2.11 REMARK 500 O HOH A 556 O HOH A 633 2.12 REMARK 500 O HOH A 732 O HOH A 817 2.12 REMARK 500 O HOH A 718 O HOH A 783 2.13 REMARK 500 O HOH A 627 O HOH A 713 2.13 REMARK 500 O HOH A 507 O HOH A 762 2.14 REMARK 500 O HOH A 553 O HOH A 795 2.14 REMARK 500 SG CYS A 293 O HOH A 521 2.15 REMARK 500 O HOH A 788 O HOH A 834 2.16 REMARK 500 O HOH A 588 O HOH A 811 2.17 REMARK 500 O HOH A 837 O HOH A 863 2.19 REMARK 500 O HOH A 760 O HOH A 833 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 721 O HOH A 782 3544 1.92 REMARK 500 O HOH A 653 O HOH A 670 3544 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 76 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 102 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR A 102 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 78 -120.18 55.21 REMARK 500 CYS A 212 -80.23 -109.66 REMARK 500 SER A 252 -31.27 80.30 REMARK 500 THR A 279 108.73 -38.74 REMARK 500 PRO A 280 116.71 -29.17 REMARK 500 ARG A 284 34.29 -83.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 1 GLY B 2 -148.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 866 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 868 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 869 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 870 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 871 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A 872 DISTANCE = 8.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 166 SG REMARK 620 2 CYS A 169 SG 107.6 REMARK 620 3 CYS A 207 SG 106.4 113.3 REMARK 620 4 CYS A 212 SG 103.0 113.6 112.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues MCM B 101 and SLL B 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BWN RELATED DB: PDB REMARK 900 RELATED ID: 5BWO RELATED DB: PDB REMARK 900 RELATED ID: 5BWP RELATED DB: PDB REMARK 900 RELATED ID: 5BWQ RELATED DB: PDB DBREF 5BWL A 33 302 UNP Q9NXA8 SIR5_HUMAN 33 302 DBREF 5BWL B 1 3 PDB 5BWL 5BWL 1 3 SEQADV 5BWL MET A 13 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL GLY A 14 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL SER A 15 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL SER A 16 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL HIS A 17 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL HIS A 18 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL HIS A 19 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL HIS A 20 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL HIS A 21 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL HIS A 22 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL SER A 23 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL SER A 24 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL GLY A 25 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL LEU A 26 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL VAL A 27 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL PRO A 28 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL ARG A 29 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL GLY A 30 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL SER A 31 UNP Q9NXA8 EXPRESSION TAG SEQADV 5BWL HIS A 32 UNP Q9NXA8 EXPRESSION TAG SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET ALA ARG PRO SER SER SEQRES 3 A 290 SER MET ALA ASP PHE ARG LYS PHE PHE ALA LYS ALA LYS SEQRES 4 A 290 HIS ILE VAL ILE ILE SER GLY ALA GLY VAL SER ALA GLU SEQRES 5 A 290 SER GLY VAL PRO THR PHE ARG GLY ALA GLY GLY TYR TRP SEQRES 6 A 290 ARG LYS TRP GLN ALA GLN ASP LEU ALA THR PRO LEU ALA SEQRES 7 A 290 PHE ALA HIS ASN PRO SER ARG VAL TRP GLU PHE TYR HIS SEQRES 8 A 290 TYR ARG ARG GLU VAL MET GLY SER LYS GLU PRO ASN ALA SEQRES 9 A 290 GLY HIS ARG ALA ILE ALA GLU CYS GLU THR ARG LEU GLY SEQRES 10 A 290 LYS GLN GLY ARG ARG VAL VAL VAL ILE THR GLN ASN ILE SEQRES 11 A 290 ASP GLU LEU HIS ARG LYS ALA GLY THR LYS ASN LEU LEU SEQRES 12 A 290 GLU ILE HIS GLY SER LEU PHE LYS THR ARG CYS THR SER SEQRES 13 A 290 CYS GLY VAL VAL ALA GLU ASN TYR LYS SER PRO ILE CYS SEQRES 14 A 290 PRO ALA LEU SER GLY LYS GLY ALA PRO GLU PRO GLY THR SEQRES 15 A 290 GLN ASP ALA SER ILE PRO VAL GLU LYS LEU PRO ARG CYS SEQRES 16 A 290 GLU GLU ALA GLY CYS GLY GLY LEU LEU ARG PRO HIS VAL SEQRES 17 A 290 VAL TRP PHE GLY GLU ASN LEU ASP PRO ALA ILE LEU GLU SEQRES 18 A 290 GLU VAL ASP ARG GLU LEU ALA HIS CYS ASP LEU CYS LEU SEQRES 19 A 290 VAL VAL GLY THR SER SER VAL VAL TYR PRO ALA ALA MET SEQRES 20 A 290 PHE ALA PRO GLN VAL ALA ALA ARG GLY VAL PRO VAL ALA SEQRES 21 A 290 GLU PHE ASN THR GLU THR THR PRO ALA THR ASN ARG PHE SEQRES 22 A 290 ARG PHE HIS PHE GLN GLY PRO CYS GLY THR THR LEU PRO SEQRES 23 A 290 GLU ALA LEU ALA SEQRES 1 B 3 LEU GLY SLL HET SLL B 3 31 HET ZN A 401 1 HET MCM B 101 21 HETNAM SLL (2S)-2-AZANYL-6-[(4-HYDROXY-4-OXO-BUTANOYL) HETNAM 2 SLL AMINO]HEXANOIC ACID HETNAM ZN ZINC ION HETNAM MCM 7-AMINO-4-METHYL-CHROMEN-2-ONE HETSYN SLL 6-N-SUCCINYL-L-LYSINE HETSYN MCM 7-AMINO-4-METHYLCOUMARIN FORMUL 2 SLL C10 H18 N2 O5 FORMUL 3 ZN ZN 2+ FORMUL 4 MCM C10 H9 N O2 FORMUL 5 HOH *376(H2 O) HELIX 1 AA1 SER A 39 ALA A 50 1 12 HELIX 2 AA2 GLY A 58 GLU A 64 1 7 HELIX 3 AA3 GLN A 81 ALA A 86 1 6 HELIX 4 AA4 THR A 87 ASN A 94 1 8 HELIX 5 AA5 ASN A 94 MET A 109 1 16 HELIX 6 AA6 GLY A 110 LYS A 112 5 3 HELIX 7 AA7 ASN A 115 LYS A 130 1 16 HELIX 8 AA8 GLU A 144 ALA A 149 1 6 HELIX 9 AA9 CYS A 181 SER A 185 5 5 HELIX 10 AB1 PRO A 200 LEU A 204 5 5 HELIX 11 AB2 ASP A 228 CYS A 242 1 15 HELIX 12 AB3 PRO A 256 MET A 259 5 4 HELIX 13 AB4 PHE A 260 ARG A 267 1 8 HELIX 14 AB5 PRO A 292 LEU A 301 1 10 SHEET 1 AA1 6 LEU A 154 GLU A 156 0 SHEET 2 AA1 6 ARG A 134 THR A 139 1 N VAL A 137 O LEU A 155 SHEET 3 AA1 6 HIS A 52 SER A 57 1 N ILE A 55 O ILE A 138 SHEET 4 AA1 6 LEU A 244 VAL A 248 1 O LEU A 246 N ILE A 56 SHEET 5 AA1 6 VAL A 271 ASN A 275 1 O PHE A 274 N VAL A 247 SHEET 6 AA1 6 PHE A 287 GLN A 290 1 O PHE A 289 N GLU A 273 SHEET 1 AA2 3 VAL A 172 GLU A 174 0 SHEET 2 AA2 3 GLY A 159 CYS A 166 -1 N THR A 164 O ALA A 173 SHEET 3 AA2 3 LEU A 216 VAL A 220 -1 O ARG A 217 N ARG A 165 LINK C GLY B 2 N SLL B 3 1555 1555 1.32 LINK C SLL B 3 N MCM B 101 1555 1555 1.35 LINK SG CYS A 166 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 169 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 207 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 212 ZN ZN A 401 1555 1555 2.31 CISPEP 1 SER A 178 PRO A 179 0 -2.21 CISPEP 2 TYR A 255 PRO A 256 0 1.51 CISPEP 3 THR A 279 PRO A 280 0 1.12 CISPEP 4 PRO A 280 ALA A 281 0 12.58 SITE 1 AC1 4 CYS A 166 CYS A 169 CYS A 207 CYS A 212 SITE 1 AC2 16 ARG A 71 ALA A 86 TYR A 102 ARG A 105 SITE 2 AC2 16 ILE A 142 VAL A 221 TRP A 222 PHE A 223 SITE 3 AC2 16 GLY A 224 GLU A 225 TYR A 255 HOH A 543 SITE 4 AC2 16 HOH A 595 GLY B 2 HOH B 201 HOH B 203 CRYST1 42.420 55.536 124.680 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023574 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008021 0.00000