HEADER SIGNALING PROTEIN/TRANSFERASE 08-JUN-15 5BWM TITLE THE COMPLEX STRUCTURE OF C3CER EXOENZYME AND GDP BOUND RHOA (NADH- TITLE 2 BOUND STATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING PROTEIN RHOA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-179; COMPND 5 SYNONYM: RHO CDNA CLONE 12,H12; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ADP-RIBOSYLTRANSFERASE; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RHOA, ARH12, ARHA, RHO12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 13 ORGANISM_TAXID: 1396; SOURCE 14 GENE: C3CER; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH10B; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 316385; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: DH10B; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PRHAM KEYWDS ADP RIBOSE TRANSFERASES, BACTERIAL TOXINS, SIGNALING PROTEIN- KEYWDS 2 TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.TODA,T.TSURUMURA,T.YOSHIDA,H.TSUGE REVDAT 4 08-NOV-23 5BWM 1 LINK REVDAT 3 19-FEB-20 5BWM 1 JRNL REMARK REVDAT 2 19-AUG-15 5BWM 1 JRNL REVDAT 1 24-JUN-15 5BWM 0 JRNL AUTH A.TODA,T.TSURUMURA,T.YOSHIDA,Y.TSUMORI,H.TSUGE JRNL TITL RHO GTPASE RECOGNITION BY C3 EXOENZYME BASED ON C3-RHOA JRNL TITL 2 COMPLEX STRUCTURE. JRNL REF J.BIOL.CHEM. V. 290 19423 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26067270 JRNL DOI 10.1074/JBC.M115.653220 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 665 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 987 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 1.73000 REMARK 3 B12 (A**2) : -0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.314 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.286 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.710 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3216 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3073 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4339 ; 1.737 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7117 ; 1.342 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 1.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;39.317 ;24.932 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 601 ;22.405 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;26.568 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3532 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 694 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1526 ; 3.125 ; 4.314 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1525 ; 3.126 ; 4.312 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1904 ; 4.839 ; 6.460 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1905 ; 4.838 ; 6.462 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1690 ; 3.419 ; 4.803 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1690 ; 3.412 ; 4.803 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2436 ; 5.346 ; 7.058 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 13635 ; 9.404 ;41.760 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 13636 ; 9.404 ;41.762 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5440 25.2707 28.1989 REMARK 3 T TENSOR REMARK 3 T11: 0.1695 T22: 0.2200 REMARK 3 T33: 0.5522 T12: -0.0218 REMARK 3 T13: -0.0366 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.4168 L22: 0.2691 REMARK 3 L33: 2.8243 L12: -0.0968 REMARK 3 L13: -0.2124 L23: 0.5836 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: -0.0769 S13: -0.0316 REMARK 3 S21: -0.0100 S22: -0.1435 S23: -0.0577 REMARK 3 S31: 0.0596 S32: -0.0975 S33: 0.0769 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9354 18.5950 37.6816 REMARK 3 T TENSOR REMARK 3 T11: 0.2454 T22: 0.3146 REMARK 3 T33: 0.4506 T12: 0.0077 REMARK 3 T13: -0.0667 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 2.9695 L22: 1.5719 REMARK 3 L33: 0.9350 L12: -1.5612 REMARK 3 L13: -0.4325 L23: 0.8203 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.5164 S13: -0.1203 REMARK 3 S21: 0.3209 S22: 0.0529 S23: 0.1200 REMARK 3 S31: 0.3869 S32: 0.1315 S33: -0.0322 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 61 REMARK 3 ORIGIN FOR THE GROUP (A): -24.2119 27.4893 12.8633 REMARK 3 T TENSOR REMARK 3 T11: 0.0325 T22: 0.3632 REMARK 3 T33: 0.5333 T12: 0.1037 REMARK 3 T13: -0.0492 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 1.8058 L22: 2.1015 REMARK 3 L33: 4.1453 L12: 1.6421 REMARK 3 L13: -0.3636 L23: 1.1631 REMARK 3 S TENSOR REMARK 3 S11: -0.0881 S12: -0.1862 S13: 0.0990 REMARK 3 S21: -0.1312 S22: -0.3295 S23: 0.1010 REMARK 3 S31: -0.1632 S32: -0.5858 S33: 0.4176 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7037 15.9986 7.2726 REMARK 3 T TENSOR REMARK 3 T11: 0.2745 T22: 0.1790 REMARK 3 T33: 0.5207 T12: -0.0442 REMARK 3 T13: 0.0496 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.2801 L22: 0.1175 REMARK 3 L33: 2.2382 L12: 0.3460 REMARK 3 L13: -0.3364 L23: 0.2776 REMARK 3 S TENSOR REMARK 3 S11: -0.1958 S12: -0.2294 S13: 0.0072 REMARK 3 S21: -0.0015 S22: -0.0857 S23: -0.0156 REMARK 3 S31: 0.4699 S32: -0.3158 S33: 0.2815 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 147 B 155 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5988 25.8266 11.5246 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.3049 REMARK 3 T33: 0.4199 T12: -0.0062 REMARK 3 T13: -0.0142 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 0.6661 L22: 4.2885 REMARK 3 L33: 6.5020 L12: -1.6517 REMARK 3 L13: -0.7526 L23: 2.8838 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: -0.0410 S13: 0.0188 REMARK 3 S21: 0.1393 S22: 0.0947 S23: -0.0172 REMARK 3 S31: 0.0294 S32: 0.0642 S33: -0.0174 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 156 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1404 24.8079 8.2168 REMARK 3 T TENSOR REMARK 3 T11: 0.3016 T22: 0.2855 REMARK 3 T33: 0.5413 T12: -0.0123 REMARK 3 T13: -0.0362 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.0157 L22: 0.7676 REMARK 3 L33: 2.3753 L12: -0.2527 REMARK 3 L13: 0.6123 L23: 0.8341 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: -0.2756 S13: 0.2212 REMARK 3 S21: -0.2327 S22: -0.0360 S23: -0.0947 REMARK 3 S31: -0.0304 S32: -0.4538 S33: 0.1025 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 197 B 219 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4853 21.5085 0.5912 REMARK 3 T TENSOR REMARK 3 T11: 0.3379 T22: 0.2349 REMARK 3 T33: 0.3999 T12: 0.0131 REMARK 3 T13: 0.0659 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 5.3873 L22: 0.5933 REMARK 3 L33: 3.2045 L12: 0.6778 REMARK 3 L13: 2.8955 L23: 0.7756 REMARK 3 S TENSOR REMARK 3 S11: -0.4313 S12: -0.1396 S13: 0.1320 REMARK 3 S21: -0.1554 S22: 0.2674 S23: 0.0035 REMARK 3 S31: 0.1060 S32: 0.0443 S33: 0.1639 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.9 REMARK 200 STARTING MODEL: 1A2B AND 3BW8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES (PH 6.4), 20% PEG1500, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.11400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.55700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY B 1 REMARK 465 ASN B 2 REMARK 465 ILE B 3 REMARK 465 PRO B 4 REMARK 465 THR B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 7 REMARK 465 LYS B 8 REMARK 465 ASP B 9 REMARK 465 CYS B 10 REMARK 465 ASN B 11 REMARK 465 ASN B 12 REMARK 465 VAL B 13 REMARK 465 ASP B 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER B 37 OE1 GLU B 40 2.13 REMARK 500 NH1 ARG B 45 OD1 ASP B 175 2.15 REMARK 500 OH TYR B 96 OE1 GLU B 160 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 128 O GLN B 131 3555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 123 66.45 -118.50 REMARK 500 LYS A 133 -7.53 -57.44 REMARK 500 LYS B 35 50.27 -91.27 REMARK 500 ASP B 91 -169.46 -100.73 REMARK 500 ASN B 173 26.49 -148.60 REMARK 500 ASN B 206 -5.42 79.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 19 OG1 REMARK 620 2 THR A 37 O 68.8 REMARK 620 3 GDP A 201 O1B 129.6 156.7 REMARK 620 4 GDP A 201 O3B 66.9 135.6 64.1 REMARK 620 5 HOH A 301 O 62.5 77.0 122.4 84.9 REMARK 620 6 HOH A 305 O 66.2 68.0 104.2 91.9 125.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GY2 RELATED DB: PDB REMARK 900 RELATED ID: 4H03 RELATED DB: PDB REMARK 900 RELATED ID: 4XSG RELATED DB: PDB REMARK 900 RELATED ID: 4XSH RELATED DB: PDB DBREF 5BWM A 1 179 UNP P61586 RHOA_HUMAN 1 179 DBREF 5BWM B 1 219 UNP Q8KNY0 Q8KNY0_BACCE 1 219 SEQADV 5BWM ASN A 25 UNP P61586 PHE 25 ENGINEERED MUTATION SEQRES 1 A 179 MET ALA ALA ILE ARG LYS LYS LEU VAL ILE VAL GLY ASP SEQRES 2 A 179 GLY ALA CYS GLY LYS THR CYS LEU LEU ILE VAL ASN SER SEQRES 3 A 179 LYS ASP GLN PHE PRO GLU VAL TYR VAL PRO THR VAL PHE SEQRES 4 A 179 GLU ASN TYR VAL ALA ASP ILE GLU VAL ASP GLY LYS GLN SEQRES 5 A 179 VAL GLU LEU ALA LEU TRP ASP THR ALA GLY GLN GLU ASP SEQRES 6 A 179 TYR ASP ARG LEU ARG PRO LEU SER TYR PRO ASP THR ASP SEQRES 7 A 179 VAL ILE LEU MET CYS PHE SER ILE ASP SER PRO ASP SER SEQRES 8 A 179 LEU GLU ASN ILE PRO GLU LYS TRP THR PRO GLU VAL LYS SEQRES 9 A 179 HIS PHE CYS PRO ASN VAL PRO ILE ILE LEU VAL GLY ASN SEQRES 10 A 179 LYS LYS ASP LEU ARG ASN ASP GLU HIS THR ARG ARG GLU SEQRES 11 A 179 LEU ALA LYS MET LYS GLN GLU PRO VAL LYS PRO GLU GLU SEQRES 12 A 179 GLY ARG ASP MET ALA ASN ARG ILE GLY ALA PHE GLY TYR SEQRES 13 A 179 MET GLU CYS SER ALA LYS THR LYS ASP GLY VAL ARG GLU SEQRES 14 A 179 VAL PHE GLU MET ALA THR ARG ALA ALA LEU SEQRES 1 B 219 GLY ASN ILE PRO THR LYS PRO LYS ASP CYS ASN ASN VAL SEQRES 2 B 219 ASP LYS TYR LYS LEU CYS THR ASN LYS GLU GLU ALA ASP SEQRES 3 B 219 ALA TRP GLY LYS LYS GLN PHE ASN LYS TRP SER LYS GLU SEQRES 4 B 219 GLU LYS SER ALA ILE ARG ASP TYR THR LYS ASN ALA ARG SEQRES 5 B 219 PRO TYR ASN GLU PHE LEU ARG MET HIS ALA GLY LYS LEU SEQRES 6 B 219 ASP SER ASP PRO THR MET LYS LYS LYS ILE GLU SER LEU SEQRES 7 B 219 ASP LYS ALA LEU ASN ARG LYS GLU ALA LYS VAL ASN ASP SEQRES 8 B 219 ASN ILE LYS VAL TYR ARG GLY ASP ASP ALA TRP ILE PHE SEQRES 9 B 219 GLY LYS GLU TYR ASP ASN SER ILE ILE LYS ASN GLY LYS SEQRES 10 B 219 VAL ASP ARG GLU LYS PHE LYS GLU ILE GLN LYS LYS PHE SEQRES 11 B 219 GLN GLY LYS THR THR THR GLU PHE GLY TYR ILE SER THR SEQRES 12 B 219 SER ILE LEU ILE ASP ALA GLY TYR ALA LYS THR ARG PRO SEQRES 13 B 219 VAL MET THR GLU PHE LYS VAL GLY SER GLY THR HIS GLY SEQRES 14 B 219 ALA TYR MET ASN SER ASP ASP LEU THR ALA TYR PRO GLY SEQRES 15 B 219 GLN TYR GLU LEU LEU LEU PRO ARG ASN THR VAL TYR LYS SEQRES 16 B 219 ILE GLU LYS ILE TYR ILE ALA ILE ASP ASN ASN THR GLN SEQRES 17 B 219 LYS GLU GLN ILE LYS VAL GLU ALA THR ILE LYS HET GDP A 201 28 HET MG A 202 1 HET NAI B 301 44 HET EDO B 302 4 HET EDO B 303 4 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAI NADH HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 MG MG 2+ FORMUL 5 NAI C21 H29 N7 O14 P2 FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *55(H2 O) HELIX 1 AA1 GLY A 17 ASP A 28 1 12 HELIX 2 AA2 GLN A 63 ASP A 67 5 5 HELIX 3 AA3 LEU A 69 TYR A 74 5 6 HELIX 4 AA4 SER A 88 LYS A 98 1 11 HELIX 5 AA5 LYS A 98 CYS A 107 1 10 HELIX 6 AA6 LYS A 118 ARG A 122 5 5 HELIX 7 AA7 ASP A 124 LYS A 133 1 10 HELIX 8 AA8 LYS A 140 GLY A 152 1 13 HELIX 9 AA9 GLY A 166 LEU A 179 1 14 HELIX 10 AB1 ASN B 21 LYS B 31 1 11 HELIX 11 AB2 SER B 37 ASN B 50 1 14 HELIX 12 AB3 ALA B 51 ALA B 62 1 12 HELIX 13 AB4 ASP B 68 LEU B 82 1 15 HELIX 14 AB5 ASP B 100 GLY B 105 5 6 HELIX 15 AB6 ASP B 109 SER B 111 5 3 HELIX 16 AB7 ASP B 119 GLN B 131 1 13 SHEET 1 AA1 6 VAL A 43 VAL A 48 0 SHEET 2 AA1 6 LYS A 51 TRP A 58 -1 O VAL A 53 N ILE A 46 SHEET 3 AA1 6 ILE A 4 GLY A 12 1 N ILE A 4 O GLU A 54 SHEET 4 AA1 6 VAL A 79 SER A 85 1 O LEU A 81 N VAL A 11 SHEET 5 AA1 6 ILE A 112 ASN A 117 1 O VAL A 115 N MET A 82 SHEET 6 AA1 6 GLY A 155 GLU A 158 1 O MET A 157 N GLY A 116 SHEET 1 AA2 5 ILE B 93 ASP B 99 0 SHEET 2 AA2 5 VAL B 157 VAL B 163 -1 O THR B 159 N ARG B 97 SHEET 3 AA2 5 GLU B 210 ILE B 218 1 O VAL B 214 N GLU B 160 SHEET 4 AA2 5 VAL B 193 ILE B 203 -1 N TYR B 200 O LYS B 213 SHEET 5 AA2 5 THR B 134 THR B 136 -1 N THR B 135 O TYR B 194 SHEET 1 AA3 2 ILE B 113 LYS B 114 0 SHEET 2 AA3 2 LYS B 117 VAL B 118 -1 O LYS B 117 N LYS B 114 SHEET 1 AA4 3 ILE B 141 SER B 144 0 SHEET 2 AA4 3 GLU B 185 LEU B 188 -1 O LEU B 188 N ILE B 141 SHEET 3 AA4 3 ALA B 170 MET B 172 -1 N ALA B 170 O LEU B 187 LINK OG1 THR A 19 MG MG A 202 1555 1555 2.36 LINK O THR A 37 MG MG A 202 1555 1555 2.35 LINK O1B GDP A 201 MG MG A 202 1555 1555 2.56 LINK O3B GDP A 201 MG MG A 202 1555 1555 2.03 LINK MG MG A 202 O HOH A 301 1555 1555 2.00 LINK MG MG A 202 O HOH A 305 1555 1555 2.34 SITE 1 AC1 17 ASP A 13 ALA A 15 CYS A 16 GLY A 17 SITE 2 AC1 17 LYS A 18 THR A 19 CYS A 20 LYS A 118 SITE 3 AC1 17 ASP A 120 LEU A 121 SER A 160 ALA A 161 SITE 4 AC1 17 LYS A 162 MG A 202 HOH A 301 HOH A 305 SITE 5 AC1 17 HOH A 312 SITE 1 AC2 5 THR A 19 THR A 37 GDP A 201 HOH A 301 SITE 2 AC2 5 HOH A 305 SITE 1 AC3 18 GLU A 40 ASN A 41 ALA B 51 ASN B 55 SITE 2 AC3 18 ARG B 59 ARG B 97 GLY B 98 ASP B 99 SITE 3 AC3 18 ASP B 100 TRP B 102 ILE B 103 GLU B 137 SITE 4 AC3 18 SER B 142 THR B 143 TYR B 151 ARG B 155 SITE 5 AC3 18 GLU B 185 EDO B 302 SITE 1 AC4 5 ARG B 59 ARG B 97 GLU B 137 TYR B 194 SITE 2 AC4 5 NAI B 301 SITE 1 AC5 9 MET B 172 ASN B 173 THR B 178 TYR B 180 SITE 2 AC5 9 PRO B 181 GLY B 182 GLN B 183 TYR B 184 SITE 3 AC5 9 GLU B 185 CRYST1 50.479 50.479 136.671 90.00 90.00 120.00 P 32 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019810 0.011437 0.000000 0.00000 SCALE2 0.000000 0.022875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007317 0.00000