data_5BXK # _entry.id 5BXK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5BXK WWPDB D_1000210683 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2020-01-29 _pdbx_database_PDB_obs_spr.pdb_id 6JBG _pdbx_database_PDB_obs_spr.replace_pdb_id 5BXK _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 5BWS _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5BXK _pdbx_database_status.recvd_initial_deposition_date 2015-06-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Hanessian, S.' 2 'Kanazawa, H.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F) ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Hanessian, S.' 2 ? primary 'Kanazawa, H.' 3 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 95.100 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5BXK _cell.details ? _cell.formula_units_Z ? _cell.length_a 28.382 _cell.length_a_esd ? _cell.length_b 83.720 _cell.length_b_esd ? _cell.length_c 51.444 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') ; 7370.424 4 ? ? ? ? 2 non-polymer syn '(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-glucopyranoside' 324.349 1 ? ? ? ? 3 water nat water 18.015 26 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUGCGUCACGCCGGCGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can UUGCGUCACGCCGGCGAAGUCGC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 A n 1 9 C n 1 10 G n 1 11 C n 1 12 C n 1 13 G n 1 14 G n 1 15 C n 1 16 G n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 23 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5BXK _struct_ref.pdbx_db_accession 5BXK _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5BXK A 1 ? 23 ? 5BXK 1 ? 23 ? 1 23 2 1 5BXK B 1 ? 23 ? 5BXK 24 ? 46 ? 24 46 3 1 5BXK C 1 ? 23 ? 5BXK 47 ? 69 ? 47 69 4 1 5BXK D 1 ? 23 ? 5BXK 70 ? 92 ? 70 92 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 S81 non-polymer . '(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-glucopyranoside' ? 'C12 H25 F N4 O5' 324.349 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5BXK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 3350, KCl, Sodium cacodylate, Spermine tetrahydrochloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-12-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 51.489 _reflns.entry_id 5BXK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.100 _reflns.d_resolution_low 51.2 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4396 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 99.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs 0.998 _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.7 _reflns.pdbx_Rmerge_I_obs 0.128 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.190 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.001 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.139 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 29410 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 3.100 3.180 ? 3.560 ? 2261 341 ? 333 97.700 ? ? 0.988 ? 0.363 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.393 ? 0 1 1 ? ? 3.180 3.270 ? 4.670 ? 2046 302 ? 302 100.000 ? ? 0.993 ? 0.280 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.303 ? 0 2 1 ? ? 3.270 3.360 ? 4.850 ? 1940 296 ? 296 100.000 ? ? 0.992 ? 0.309 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.336 ? 0 3 1 ? ? 3.360 3.460 ? 5.280 ? 2079 300 ? 301 100.000 ? ? 0.992 ? 0.292 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.316 ? 0 4 1 ? ? 3.460 3.580 ? 5.480 ? 2053 305 ? 304 99.700 ? ? 0.993 ? 0.269 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.291 ? 0 5 1 ? ? 3.580 3.700 ? 6.950 ? 1764 261 ? 262 100.000 ? ? 0.994 ? 0.206 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.223 ? 0 6 1 ? ? 3.700 3.840 ? 7.190 ? 1792 279 ? 279 100.000 ? ? 0.993 ? 0.208 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.226 ? 0 7 1 ? ? 3.840 4.000 ? 8.850 ? 1828 269 ? 269 100.000 ? ? 0.997 ? 0.162 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.175 ? 0 8 1 ? ? 4.000 4.180 ? 11.370 ? 1617 239 ? 238 99.600 ? ? 0.994 ? 0.155 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.168 ? 0 9 1 ? ? 4.180 4.380 ? 11.870 ? 1593 240 ? 241 100.000 ? ? 0.994 ? 0.160 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.173 ? 0 10 1 ? ? 4.380 4.620 ? 12.930 ? 1621 229 ? 228 99.600 ? ? 0.991 ? 0.146 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.158 ? 0 11 1 ? ? 4.620 4.900 ? 14.220 ? 1433 212 ? 212 100.000 ? ? 0.992 ? 0.123 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.133 ? 0 12 1 ? ? 4.900 5.240 ? 15.470 ? 1277 199 ? 199 100.000 ? ? 0.993 ? 0.117 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.128 ? 0 13 1 ? ? 5.240 5.660 ? 19.570 ? 1403 202 ? 204 100.000 ? ? 0.997 ? 0.089 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.096 ? 0 14 1 ? ? 5.660 6.200 ? 16.830 ? 1014 162 ? 160 98.800 ? ? 0.994 ? 0.103 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.112 ? 0 15 1 ? ? 6.200 6.930 ? 22.410 ? 1145 166 ? 166 100.000 ? ? 0.997 ? 0.074 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.080 ? 0 16 1 ? ? 6.930 8.000 ? 24.880 ? 871 138 ? 138 100.000 ? ? 0.996 ? 0.063 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.069 ? 0 17 1 ? ? 8.000 9.800 ? 24.020 ? 778 121 ? 121 100.000 ? ? 0.999 ? 0.062 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.067 ? 0 18 1 ? ? 9.800 13.860 ? 30.790 ? 591 92 ? 91 98.900 ? ? 0.997 ? 0.045 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.049 ? 0 19 1 ? ? 13.860 ? ? 29.930 ? 304 53 ? 52 98.100 ? ? 0.999 ? 0.041 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.045 ? 0 20 1 ? ? # _refine.aniso_B[1][1] 10.9700 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 19.3280 _refine.aniso_B[2][2] 13.2230 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -24.1940 _refine.B_iso_max 159.100 _refine.B_iso_mean 73.3056 _refine.B_iso_min 18.590 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5BXK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.1000 _refine.ls_d_res_low 51.2 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4395 _refine.ls_number_reflns_R_free 456 _refine.ls_number_reflns_R_work 3939 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.9000 _refine.ls_percent_reflns_R_free 10.4000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2375 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1828 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol 25.9733 _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5BWS _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.1000 _refine_hist.d_res_low 51.2 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 26 _refine_hist.number_atoms_total 1966 _refine_hist.pdbx_number_residues_total 90 _refine_hist.pdbx_B_iso_mean_ligand 50.51 _refine_hist.pdbx_B_iso_mean_solvent 44.26 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1918 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? ? ? c_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.116 ? ? ? c_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.000 1.500 ? ? c_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.162 2.000 ? ? c_scbond_it ? ? 'X-RAY DIFFRACTION' ? 0.000 2.000 ? ? c_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 1.793 2.500 ? ? c_scangle_it ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.1000 3.2100 440 . 37 403 99.1000 . . . 0.2690 . 0.2495 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.2100 3.3400 425 . 55 370 100.0000 . . . 0.2449 . 0.2319 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.3400 3.4900 450 . 43 407 100.0000 . . . 0.2137 . 0.2134 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.4900 3.6800 436 . 52 384 100.0000 . . . 0.2961 . 0.2168 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.6800 3.9100 427 . 48 379 100.0000 . . . 0.2857 . 0.1951 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.9100 4.2100 445 . 52 393 100.0000 . . . 0.2564 . 0.1782 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.2100 4.6300 442 . 42 400 100.0000 . . . 0.2302 . 0.1660 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.6300 5.3000 433 . 40 393 100.0000 . . . 0.2240 . 0.1536 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 5.3000 6.6800 446 . 39 407 100.0000 . . . 0.2494 . 0.1624 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 6.6800 100.0000 451 . 48 403 99.6000 . . . 0.1909 . 0.1718 . . . . . . 10 . . . # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 CNS_TOPPAR:dna-rna.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:ion.param ? 'X-RAY DIFFRACTION' 4 get_xplor.param ? 'X-RAY DIFFRACTION' 5 S81.param ? 'X-RAY DIFFRACTION' 6 S82.param ? # _struct.entry_id 5BXK _struct.title ;Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F) ; _struct.pdbx_descriptor ;RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5BXK _struct_keywords.text 'RNA, antibiotic, RNA-ANTIBIOTIC complex' _struct_keywords.pdbx_keywords RNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 22 N1 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 22 O6 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 22 N2 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A A 18 N6 ? ? ? 1_555 B A 8 N1 ? ? A A 18 B A 31 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? hydrog38 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 6 O2 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog42 hydrog ? ? A U 20 O4 ? ? ? 1_555 B U 6 N3 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog43 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 23 N3 ? ? C G 49 D C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 23 O2 ? ? C G 49 D C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 23 N4 ? ? C G 49 D C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? C C 4 N3 ? ? ? 1_555 D G 22 N1 ? ? C C 50 D G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? C C 4 N4 ? ? ? 1_555 D G 22 O6 ? ? C C 50 D G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? C C 4 O2 ? ? ? 1_555 D G 22 N2 ? ? C C 50 D G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 21 N3 ? ? C G 51 D C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 21 O2 ? ? C G 51 D C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 21 N4 ? ? C G 51 D C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? C U 6 N3 ? ? ? 1_555 D U 20 O4 ? ? C U 52 D U 89 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog62 hydrog ? ? C U 6 O2 ? ? ? 1_555 D U 20 N3 ? ? C U 52 D U 89 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog63 hydrog ? ? C C 7 N3 ? ? ? 1_555 D G 19 N1 ? ? C C 53 D G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 19 O6 ? ? C C 53 D G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? C C 7 O2 ? ? ? 1_555 D G 19 N2 ? ? C C 53 D G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? C A 8 N1 ? ? ? 1_555 D A 18 N6 ? ? C A 54 D A 87 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? hydrog67 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 16 N1 ? ? C C 55 D G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 16 O6 ? ? C C 55 D G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 16 N2 ? ? C C 55 D G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog70 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 15 N3 ? ? C G 56 D C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog71 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 15 O2 ? ? C G 56 D C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog72 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 15 N4 ? ? C G 56 D C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog73 hydrog ? ? C C 11 N3 ? ? ? 1_555 D G 14 N1 ? ? C C 57 D G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog74 hydrog ? ? C C 11 N4 ? ? ? 1_555 D G 14 O6 ? ? C C 57 D G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog75 hydrog ? ? C C 11 O2 ? ? ? 1_555 D G 14 N2 ? ? C C 57 D G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog76 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 13 N2 ? ? C C 58 D G 82 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog77 hydrog ? ? C G 13 N1 ? ? ? 1_555 D C 12 N3 ? ? C G 59 D C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog78 hydrog ? ? C G 13 N2 ? ? ? 1_555 D C 12 O2 ? ? C G 59 D C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog79 hydrog ? ? C G 13 O6 ? ? ? 1_555 D C 12 N4 ? ? C G 59 D C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog80 hydrog ? ? C G 14 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 60 D C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog81 hydrog ? ? C G 14 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 60 D C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog82 hydrog ? ? C G 14 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 60 D C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog83 hydrog ? ? C C 15 N3 ? ? ? 1_555 D G 10 N1 ? ? C C 61 D G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog84 hydrog ? ? C C 15 N4 ? ? ? 1_555 D G 10 O6 ? ? C C 61 D G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog85 hydrog ? ? C C 15 O2 ? ? ? 1_555 D G 10 N2 ? ? C C 61 D G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog86 hydrog ? ? C G 16 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 62 D C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog87 hydrog ? ? C G 16 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 62 D C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog88 hydrog ? ? C G 16 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 62 D C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog89 hydrog ? ? C A 18 N6 ? ? ? 1_555 D A 8 N1 ? ? C A 64 D A 77 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? hydrog90 hydrog ? ? C G 19 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 65 D C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog91 hydrog ? ? C G 19 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 65 D C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog92 hydrog ? ? C G 19 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 65 D C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog93 hydrog ? ? C U 20 N3 ? ? ? 1_555 D U 6 O4 ? ? C U 66 D U 75 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog94 hydrog ? ? C U 20 O2 ? ? ? 1_555 D U 6 N3 ? ? C U 66 D U 75 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog95 hydrog ? ? C C 21 N3 ? ? ? 1_555 D G 5 N1 ? ? C C 67 D G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog96 hydrog ? ? C C 21 N4 ? ? ? 1_555 D G 5 O6 ? ? C C 67 D G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog97 hydrog ? ? C C 21 O2 ? ? ? 1_555 D G 5 N2 ? ? C C 67 D G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog98 hydrog ? ? C G 22 N1 ? ? ? 1_555 D C 4 N3 ? ? C G 68 D C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog99 hydrog ? ? C G 22 N2 ? ? ? 1_555 D C 4 O2 ? ? C G 68 D C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog100 hydrog ? ? C G 22 O6 ? ? ? 1_555 D C 4 N4 ? ? C G 68 D C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog101 hydrog ? ? C C 23 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 69 D G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog102 hydrog ? ? C C 23 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 69 D G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog103 hydrog ? ? C C 23 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 69 D G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id S81 _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'binding site for residue S81 B 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 13 U A 6 ? U A 6 . ? 1_555 ? 3 AC1 13 C A 7 ? C A 7 . ? 1_555 ? 4 AC1 13 A A 8 ? A A 8 . ? 1_555 ? 5 AC1 13 C A 9 ? C A 9 . ? 1_555 ? 6 AC1 13 G B 16 ? G B 39 . ? 1_555 ? 7 AC1 13 A B 17 ? A B 40 . ? 1_555 ? 8 AC1 13 A B 18 ? A B 41 . ? 1_555 ? 9 AC1 13 G B 19 ? G B 42 . ? 1_555 ? 10 AC1 13 U B 20 ? U B 43 . ? 1_555 ? 11 AC1 13 C B 21 ? C B 44 . ? 1_555 ? 12 AC1 13 HOH G . ? HOH B 402 . ? 1_555 ? 13 AC1 13 U D 2 ? U D 71 . ? 1_655 ? # _atom_sites.entry_id 5BXK _atom_sites.fract_transf_matrix[1][1] 0.035234 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003145 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011945 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019516 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 ? ? ? A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n B 1 1 U 1 24 ? ? ? B . n B 1 2 U 2 25 25 U U B . n B 1 3 G 3 26 26 G G B . n B 1 4 C 4 27 27 C C B . n B 1 5 G 5 28 28 G G B . n B 1 6 U 6 29 29 U U B . n B 1 7 C 7 30 30 C C B . n B 1 8 A 8 31 31 A A B . n B 1 9 C 9 32 32 C C B . n B 1 10 G 10 33 33 G G B . n B 1 11 C 11 34 34 C C B . n B 1 12 C 12 35 35 C C B . n B 1 13 G 13 36 36 G G B . n B 1 14 G 14 37 37 G G B . n B 1 15 C 15 38 38 C C B . n B 1 16 G 16 39 39 G G B . n B 1 17 A 17 40 40 A A B . n B 1 18 A 18 41 41 A A B . n B 1 19 G 19 42 42 G G B . n B 1 20 U 20 43 43 U U B . n B 1 21 C 21 44 44 C C B . n B 1 22 G 22 45 45 G G B . n B 1 23 C 23 46 46 C C B . n C 1 1 U 1 47 47 U U C . n C 1 2 U 2 48 48 U U C . n C 1 3 G 3 49 49 G G C . n C 1 4 C 4 50 50 C C C . n C 1 5 G 5 51 51 G G C . n C 1 6 U 6 52 52 U U C . n C 1 7 C 7 53 53 C C C . n C 1 8 A 8 54 54 A A C . n C 1 9 C 9 55 55 C C C . n C 1 10 G 10 56 56 G G C . n C 1 11 C 11 57 57 C C C . n C 1 12 C 12 58 58 C C C . n C 1 13 G 13 59 59 G G C . n C 1 14 G 14 60 60 G G C . n C 1 15 C 15 61 61 C C C . n C 1 16 G 16 62 62 G G C . n C 1 17 A 17 63 63 A A C . n C 1 18 A 18 64 64 A A C . n C 1 19 G 19 65 65 G G C . n C 1 20 U 20 66 66 U U C . n C 1 21 C 21 67 67 C C C . n C 1 22 G 22 68 68 G G C . n C 1 23 C 23 69 69 C C C . n D 1 1 U 1 70 70 U U D . n D 1 2 U 2 71 71 U U D . n D 1 3 G 3 72 72 G G D . n D 1 4 C 4 73 73 C C D . n D 1 5 G 5 74 74 G G D . n D 1 6 U 6 75 75 U U D . n D 1 7 C 7 76 76 C C D . n D 1 8 A 8 77 77 A A D . n D 1 9 C 9 78 78 C C D . n D 1 10 G 10 79 79 G G D . n D 1 11 C 11 80 80 C C D . n D 1 12 C 12 81 81 C C D . n D 1 13 G 13 82 82 G G D . n D 1 14 G 14 83 83 G G D . n D 1 15 C 15 84 84 C C D . n D 1 16 G 16 85 85 G G D . n D 1 17 A 17 86 86 A A D . n D 1 18 A 18 87 87 A A D . n D 1 19 G 19 88 88 G G D . n D 1 20 U 20 89 89 U U D . n D 1 21 C 21 90 90 C C D . n D 1 22 G 22 91 91 G G D . n D 1 23 C 23 92 92 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 S81 1 301 301 S81 S81 B . F 3 HOH 1 101 101 HOH HOH A . F 3 HOH 2 102 122 HOH HOH A . F 3 HOH 3 103 114 HOH HOH A . F 3 HOH 4 104 109 HOH HOH A . F 3 HOH 5 105 103 HOH HOH A . F 3 HOH 6 106 108 HOH HOH A . F 3 HOH 7 107 119 HOH HOH A . F 3 HOH 8 108 126 HOH HOH A . F 3 HOH 9 109 120 HOH HOH A . F 3 HOH 10 110 125 HOH HOH A . G 3 HOH 1 401 110 HOH HOH B . G 3 HOH 2 402 104 HOH HOH B . G 3 HOH 3 403 111 HOH HOH B . G 3 HOH 4 404 121 HOH HOH B . G 3 HOH 5 405 113 HOH HOH B . G 3 HOH 6 406 118 HOH HOH B . H 3 HOH 1 101 124 HOH HOH C . H 3 HOH 2 102 106 HOH HOH C . H 3 HOH 3 103 123 HOH HOH C . H 3 HOH 4 104 107 HOH HOH C . H 3 HOH 5 105 112 HOH HOH C . H 3 HOH 6 106 116 HOH HOH C . I 3 HOH 1 101 105 HOH HOH D . I 3 HOH 2 102 115 HOH HOH D . I 3 HOH 3 103 117 HOH HOH D . I 3 HOH 4 104 102 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G 2 1 C,D,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2080 ? 1 MORE -14 ? 1 'SSA (A^2)' 8280 ? 2 'ABSA (A^2)' 2040 ? 2 MORE -16 ? 2 'SSA (A^2)' 8460 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-06-22 2 'Structure model' 1 1 2017-10-11 3 'Structure model' 1 2 2020-01-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Obsolete ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' Advisory 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_source 2 2 'Structure model' pdbx_struct_oper_list 3 2 'Structure model' reflns_shell 4 3 'Structure model' pdbx_database_PDB_obs_spr 5 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 2 'Structure model' '_reflns_shell.percent_possible_all' 4 3 'Structure model' '_pdbx_database_status.status_code' 5 3 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? CNS ? ? ? 1.3 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 22 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 22 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 22 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 126.86 _pdbx_validate_rmsd_angle.angle_target_value 113.70 _pdbx_validate_rmsd_angle.angle_deviation 13.16 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id U _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 2 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.096 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 1 ? A U 1 2 1 Y 1 B U 24 ? B U 1 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5BXK 'double helix' 5BXK 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 23 1_555 0.085 0.030 -0.360 4.709 -14.452 2.772 1 A_G3:C46_B A 3 ? B 46 ? 19 1 1 A C 4 1_555 B G 22 1_555 -0.065 -0.083 0.341 1.545 -8.077 -0.127 2 A_C4:G45_B A 4 ? B 45 ? 19 1 1 A G 5 1_555 B C 21 1_555 -0.069 -0.016 -0.187 -3.446 -12.579 4.470 3 A_G5:C44_B A 5 ? B 44 ? 19 1 1 A C 7 1_555 B G 19 1_555 0.172 0.021 -0.382 5.212 2.194 -3.072 4 A_C7:G42_B A 7 ? B 42 ? 19 1 1 A C 9 1_555 B G 16 1_555 0.202 -0.215 -0.074 10.598 -16.111 2.141 5 A_C9:G39_B A 9 ? B 39 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.027 0.031 -0.493 -7.850 -10.834 4.709 6 A_G10:C38_B A 10 ? B 38 ? 19 1 1 A C 11 1_555 B G 14 1_555 0.219 -0.168 -0.407 6.866 -8.878 0.527 7 A_C11:G37_B A 11 ? B 37 ? 19 1 1 A C 12 1_555 B G 13 1_555 0.053 -0.001 -0.018 6.071 -13.535 -2.921 8 A_C12:G36_B A 12 ? B 36 ? 19 1 1 A G 13 1_555 B C 12 1_555 0.484 -0.071 -0.121 -2.817 -7.798 -3.201 9 A_G13:C35_B A 13 ? B 35 ? 19 1 1 A G 14 1_555 B C 11 1_555 -0.238 -0.170 0.096 -6.209 -6.771 -1.395 10 A_G14:C34_B A 14 ? B 34 ? 19 1 1 A C 15 1_555 B G 10 1_555 0.046 -0.083 0.299 -3.176 0.632 -0.858 11 A_C15:G33_B A 15 ? B 33 ? 19 1 1 A G 16 1_555 B C 9 1_555 -0.260 -0.072 -0.136 -4.994 -12.542 1.966 12 A_G16:C32_B A 16 ? B 32 ? 19 1 1 A A 18 1_555 B A 8 1_555 -1.811 1.464 0.655 17.832 -6.011 2.340 13 A_A18:A31_B A 18 ? B 31 ? ? 1 1 A G 19 1_555 B C 7 1_555 -0.024 -0.219 0.136 11.541 -22.084 3.243 14 A_G19:C30_B A 19 ? B 30 ? 19 1 1 A U 20 1_555 B U 6 1_555 -1.596 -1.654 -0.104 10.330 -21.487 3.868 15 A_U20:U29_B A 20 ? B 29 ? 16 1 1 A C 21 1_555 B G 5 1_555 -0.144 -0.025 0.631 -7.350 -0.460 7.725 16 A_C21:G28_B A 21 ? B 28 ? 19 1 1 A G 22 1_555 B C 4 1_555 0.514 -0.295 0.156 -3.111 10.066 2.749 17 A_G22:C27_B A 22 ? B 27 ? 19 1 1 A C 23 1_555 B G 3 1_555 -0.073 0.284 -0.130 14.465 12.201 7.868 18 A_C23:G26_B A 23 ? B 26 ? 19 1 1 C G 3 1_555 D C 23 1_555 0.726 -0.089 0.051 0.682 -13.418 -2.564 19 C_G49:C92_D C 49 ? D 92 ? 19 1 1 C C 4 1_555 D G 22 1_555 0.032 0.149 0.012 11.428 -16.534 9.495 20 C_C50:G91_D C 50 ? D 91 ? 19 1 1 C G 5 1_555 D C 21 1_555 -0.006 -0.129 -0.304 -3.640 -21.573 7.493 21 C_G51:C90_D C 51 ? D 90 ? 19 1 1 C U 6 1_555 D U 20 1_555 1.344 -1.645 0.097 -0.688 -16.192 2.986 22 C_U52:U89_D C 52 ? D 89 ? 16 1 1 C C 7 1_555 D G 19 1_555 0.024 -0.155 0.661 -13.811 -12.271 3.739 23 C_C53:G88_D C 53 ? D 88 ? 19 1 1 C A 8 1_555 D A 18 1_555 2.288 1.914 0.044 -19.162 12.087 3.529 24 C_A54:A87_D C 54 ? D 87 ? ? ? 1 C C 9 1_555 D G 16 1_555 0.046 -0.041 -0.129 13.484 -15.024 2.611 25 C_C55:G85_D C 55 ? D 85 ? 19 1 1 C G 10 1_555 D C 15 1_555 0.605 0.124 0.580 5.067 -14.690 7.331 26 C_G56:C84_D C 56 ? D 84 ? 19 1 1 C C 11 1_555 D G 14 1_555 0.252 -0.111 0.512 2.591 -10.838 4.506 27 C_C57:G83_D C 57 ? D 83 ? 19 1 1 C C 12 1_555 D G 13 1_555 0.414 0.080 0.643 -5.524 -16.342 10.442 28 C_C58:G82_D C 58 ? D 82 ? ? 1 1 C G 13 1_555 D C 12 1_555 -0.039 -0.256 0.709 7.125 -9.415 -1.875 29 C_G59:C81_D C 59 ? D 81 ? 19 1 1 C G 14 1_555 D C 11 1_555 0.228 0.054 -0.013 -5.495 -19.906 3.412 30 C_G60:C80_D C 60 ? D 80 ? 19 1 1 C C 15 1_555 D G 10 1_555 0.042 0.012 0.699 -9.047 -11.288 4.539 31 C_C61:G79_D C 61 ? D 79 ? 19 1 1 C G 16 1_555 D C 9 1_555 -0.110 -0.282 -0.130 -10.914 -12.453 -1.257 32 C_G62:C78_D C 62 ? D 78 ? 19 1 1 C A 18 1_555 D A 8 1_555 -2.590 1.315 -0.267 10.819 3.087 -0.518 33 C_A64:A77_D C 64 ? D 77 ? ? 1 1 C G 19 1_555 D C 7 1_555 0.456 0.076 -0.138 1.298 -13.690 6.401 34 C_G65:C76_D C 65 ? D 76 ? 19 1 1 C U 20 1_555 D U 6 1_555 2.277 -2.016 0.597 2.650 -22.502 8.941 35 C_U66:U75_D C 66 ? D 75 ? 16 1 1 C C 21 1_555 D G 5 1_555 1.183 -0.197 0.440 0.393 -13.164 9.861 36 C_C67:G74_D C 67 ? D 74 ? 19 1 1 C G 22 1_555 D C 4 1_555 -0.486 -0.222 0.077 -12.832 -14.419 -0.481 37 C_G68:C73_D C 68 ? D 73 ? 19 1 1 C C 23 1_555 D G 3 1_555 -0.345 -0.237 0.474 -6.340 -9.015 0.923 38 C_C69:G72_D C 69 ? D 72 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 23 1_555 A C 4 1_555 B G 22 1_555 -0.306 -1.431 3.343 -8.201 6.624 32.536 -3.477 -0.768 2.990 11.454 14.181 34.157 1 AA_G3C4:G45C46_BB A 3 ? B 46 ? A 4 ? B 45 ? 1 A C 4 1_555 B G 22 1_555 A G 5 1_555 B C 21 1_555 0.862 -1.875 3.258 4.100 8.687 29.662 -5.043 -0.874 2.706 16.435 -7.757 31.146 2 AA_C4G5:C44G45_BB A 4 ? B 45 ? A 5 ? B 44 ? 1 A G 5 1_555 B C 21 1_555 A C 7 1_555 B G 19 1_555 1.099 -3.620 6.019 1.669 11.048 65.366 -4.096 -0.888 5.438 10.152 -1.533 66.210 3 AA_G5C7:G42C44_BB A 5 ? B 44 ? A 7 ? B 42 ? 1 A C 9 1_555 B G 16 1_555 A G 10 1_555 B C 15 1_555 -0.279 -1.701 3.761 0.301 16.862 28.080 -5.990 0.548 2.382 31.422 -0.561 32.668 4 AA_C9G10:C38G39_BB A 9 ? B 39 ? A 10 ? B 38 ? 1 A G 10 1_555 B C 15 1_555 A C 11 1_555 B G 14 1_555 -0.263 -1.133 2.892 0.130 3.692 32.537 -2.560 0.486 2.749 6.562 -0.231 32.741 5 AA_G10C11:G37C38_BB A 10 ? B 38 ? A 11 ? B 37 ? 1 A C 11 1_555 B G 14 1_555 A C 12 1_555 B G 13 1_555 0.258 -1.604 3.290 -1.732 8.248 32.644 -4.037 -0.712 2.796 14.377 3.018 33.686 6 AA_C11C12:G36G37_BB A 11 ? B 37 ? A 12 ? B 36 ? 1 A C 12 1_555 B G 13 1_555 A G 13 1_555 B C 12 1_555 -0.167 -2.226 3.365 -0.100 12.220 32.261 -5.491 0.268 2.389 21.071 0.173 34.440 7 AA_C12G13:C35G36_BB A 12 ? B 36 ? A 13 ? B 35 ? 1 A G 13 1_555 B C 12 1_555 A G 14 1_555 B C 11 1_555 0.176 -1.630 3.229 -0.531 7.003 30.562 -4.248 -0.420 2.792 13.069 0.991 31.339 8 AA_G13G14:C34C35_BB A 13 ? B 35 ? A 14 ? B 34 ? 1 A G 14 1_555 B C 11 1_555 A C 15 1_555 B G 10 1_555 -0.291 -1.842 3.269 -1.459 6.188 33.849 -4.030 0.276 2.906 10.513 2.478 34.423 9 AA_G14C15:G33C34_BB A 14 ? B 34 ? A 15 ? B 33 ? 1 A C 15 1_555 B G 10 1_555 A G 16 1_555 B C 9 1_555 0.044 -1.736 2.954 5.646 20.165 31.952 -4.620 0.480 1.605 32.623 -9.134 38.052 10 AA_C15G16:C32G33_BB A 15 ? B 33 ? A 16 ? B 32 ? 1 A G 16 1_555 B C 9 1_555 A A 18 1_555 B A 8 1_555 -2.855 -0.720 3.503 1.602 18.379 38.861 -2.843 4.068 2.790 25.922 -2.260 42.864 11 AA_G16A18:A31C32_BB A 16 ? B 32 ? A 18 ? B 31 ? 1 A A 18 1_555 B A 8 1_555 A G 19 1_555 B C 7 1_555 -0.176 -1.232 3.410 1.989 9.100 31.031 -3.801 0.663 2.924 16.548 -3.617 32.366 12 AA_A18G19:C30A31_BB A 18 ? B 31 ? A 19 ? B 30 ? 1 A G 19 1_555 B C 7 1_555 A U 20 1_555 B U 6 1_555 -0.710 -0.963 2.983 -3.165 10.782 32.586 -3.103 0.767 2.599 18.541 5.443 34.420 13 AA_G19U20:U29C30_BB A 19 ? B 30 ? A 20 ? B 29 ? 1 A U 20 1_555 B U 6 1_555 A C 21 1_555 B G 5 1_555 -0.005 -2.055 3.849 -12.902 9.843 42.768 -3.615 -1.257 3.200 12.953 16.980 45.608 14 AA_U20C21:G28U29_BB A 20 ? B 29 ? A 21 ? B 28 ? 1 A C 21 1_555 B G 5 1_555 A G 22 1_555 B C 4 1_555 -0.612 -1.366 2.958 1.719 7.556 28.521 -4.040 1.509 2.482 14.990 -3.410 29.534 15 AA_C21G22:C27G28_BB A 21 ? B 28 ? A 22 ? B 27 ? 1 A G 22 1_555 B C 4 1_555 A C 23 1_555 B G 3 1_555 0.236 -1.929 2.875 2.063 9.670 32.533 -4.539 -0.140 2.237 16.784 -3.580 33.964 16 AA_G22C23:G26C27_BB A 22 ? B 27 ? A 23 ? B 26 ? 1 C G 3 1_555 D C 23 1_555 C C 4 1_555 D G 22 1_555 0.688 -1.083 2.986 1.529 2.908 28.350 -2.795 -1.082 2.895 5.912 -3.108 28.536 17 CC_G49C50:G91C92_DD C 49 ? D 92 ? C 50 ? D 91 ? 1 C C 4 1_555 D G 22 1_555 C G 5 1_555 D C 21 1_555 0.071 -1.880 3.481 2.555 16.264 26.853 -6.259 0.307 2.036 31.538 -4.954 31.419 18 CC_C50G51:C90G91_DD C 50 ? D 91 ? C 51 ? D 90 ? 1 C G 5 1_555 D C 21 1_555 C U 6 1_555 D U 20 1_555 0.089 -1.124 3.139 -4.155 9.545 40.442 -2.506 -0.528 2.793 13.538 5.894 41.706 19 CC_G51U52:U89C90_DD C 51 ? D 90 ? C 52 ? D 89 ? 1 C U 6 1_555 D U 20 1_555 C C 7 1_555 D G 19 1_555 0.200 -1.810 3.305 -0.247 10.801 33.121 -4.553 -0.370 2.603 18.349 0.420 34.792 20 CC_U52C53:G88U89_DD C 52 ? D 89 ? C 53 ? D 88 ? 1 C C 7 1_555 D G 19 1_555 C A 8 1_555 D A 18 1_555 -0.608 -2.077 3.193 7.066 5.280 33.108 -4.286 2.046 2.658 9.066 -12.134 34.231 21 CC_C53A54:A87G88_DD C 53 ? D 88 ? C 54 ? D 87 ? 1 C A 8 1_555 D A 18 1_555 C C 9 1_555 D G 16 1_555 2.820 -0.176 3.439 -8.862 21.775 39.321 -2.072 -4.391 2.380 29.394 11.963 45.573 22 CC_A54C55:G85A87_DD C 54 ? D 87 ? C 55 ? D 85 ? 1 C C 9 1_555 D G 16 1_555 C G 10 1_555 D C 15 1_555 -0.397 -1.441 3.288 -4.871 12.790 36.298 -3.656 0.035 2.679 19.690 7.499 38.710 23 CC_C55G56:C84G85_DD C 55 ? D 85 ? C 56 ? D 84 ? 1 C G 10 1_555 D C 15 1_555 C C 11 1_555 D G 14 1_555 -0.177 -1.510 3.263 -2.296 7.023 29.901 -4.148 -0.091 2.848 13.356 4.366 30.780 24 CC_G56C57:G83C84_DD C 56 ? D 84 ? C 57 ? D 83 ? 1 C C 11 1_555 D G 14 1_555 C C 12 1_555 D G 13 1_555 0.590 -1.363 3.300 3.717 2.917 33.625 -2.803 -0.413 3.219 5.012 -6.386 33.946 25 CC_C57C58:G82G83_DD C 57 ? D 83 ? C 58 ? D 82 ? 1 C C 12 1_555 D G 13 1_555 C G 13 1_555 D C 12 1_555 -0.807 -1.653 2.552 -1.507 8.464 33.839 -3.690 1.179 2.123 14.257 2.538 34.883 26 CC_C58G59:C81G82_DD C 58 ? D 82 ? C 59 ? D 81 ? 1 C G 13 1_555 D C 12 1_555 C G 14 1_555 D C 11 1_555 -0.243 -1.278 3.466 5.179 9.590 33.879 -3.500 1.157 2.940 15.953 -8.615 35.540 27 CC_G59G60:C80C81_DD C 59 ? D 81 ? C 60 ? D 80 ? 1 C G 14 1_555 D C 11 1_555 C C 15 1_555 D G 10 1_555 0.104 -1.212 3.190 -6.389 6.634 33.386 -2.999 -1.100 2.837 11.283 10.866 34.599 28 CC_G60C61:G79C80_DD C 60 ? D 80 ? C 61 ? D 79 ? 1 C C 15 1_555 D G 10 1_555 C G 16 1_555 D C 9 1_555 -0.077 -1.683 3.129 7.018 13.086 29.580 -4.854 1.151 2.142 23.832 -12.781 33.024 29 CC_C61G62:C78G79_DD C 61 ? D 79 ? C 62 ? D 78 ? 1 C G 16 1_555 D C 9 1_555 C A 18 1_555 D A 8 1_555 -3.025 -0.856 3.378 3.832 19.401 38.423 -2.967 4.479 2.400 27.382 -5.409 43.042 30 CC_G62A64:A77C78_DD C 62 ? D 78 ? C 64 ? D 77 ? 1 C A 18 1_555 D A 8 1_555 C G 19 1_555 D C 7 1_555 0.083 -1.299 3.564 -5.360 8.125 40.407 -2.741 -0.717 3.219 11.562 7.626 41.515 31 CC_A64G65:C76A77_DD C 64 ? D 77 ? C 65 ? D 76 ? 1 C G 19 1_555 D C 7 1_555 C U 20 1_555 D U 6 1_555 0.494 -1.372 3.112 -6.228 4.870 43.506 -2.244 -1.193 2.857 6.505 8.320 44.184 32 CC_G65U66:U75C76_DD C 65 ? D 76 ? C 66 ? D 75 ? 1 C U 20 1_555 D U 6 1_555 C C 21 1_555 D G 5 1_555 0.030 -1.272 3.252 6.209 1.852 30.971 -2.672 1.076 3.119 3.421 -11.470 31.625 33 CC_U66C67:G74U75_DD C 66 ? D 75 ? C 67 ? D 74 ? 1 C C 21 1_555 D G 5 1_555 C G 22 1_555 D C 4 1_555 -0.741 -2.271 3.251 3.083 13.864 21.331 -8.202 2.356 1.413 33.137 -7.368 25.581 34 CC_C67G68:C73G74_DD C 67 ? D 74 ? C 68 ? D 73 ? 1 C G 22 1_555 D C 4 1_555 C C 23 1_555 D G 3 1_555 0.322 -1.471 3.100 -0.881 2.103 35.825 -2.668 -0.640 3.004 3.415 1.430 35.895 35 CC_G68C69:G72C73_DD C 68 ? D 73 ? C 69 ? D 72 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-glucopyranoside' S81 3 water HOH #