HEADER TRANSFERASE 09-JUN-15 5BY0 TITLE CRYSTAL STRUCTURE OF MAGNESIUM-BOUND DUF89 PROTEIN SACCHAROMYCES TITLE 2 CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-GLUTAMATE O-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: YMR027W, YM9711.17; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: BL21DE3 KEYWDS DUF89, MG-BOUND, FAMILY OF CARBOHYDRATE PHOSPHATASES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,M.CUFF,H.CUI,X.XU,A.SAVCHENKO,A.JOACHIMIAK,A.YAKUNIN REVDAT 2 07-OCT-15 5BY0 1 REMARK REVDAT 1 29-JUL-15 5BY0 0 JRNL AUTH B.NOCEK,M.CUFF,H.CUI,X.XU,A.SAVCHENKO,A.JOACHIMIAK,A.YAKUNIN JRNL TITL CRYSTAL STRUCTURE OF MAGNESIUM-BOUND DUF89 PROTEIN JRNL TITL 2 SACCHAROMYCES CEREVISIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1888 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 46789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3900 - 4.6200 0.99 2661 125 0.1460 0.1750 REMARK 3 2 4.6237 - 3.6713 1.00 2630 160 0.1275 0.1627 REMARK 3 3 3.6713 - 3.2076 1.00 2615 147 0.1516 0.1822 REMARK 3 4 3.2076 - 2.9145 1.00 2634 149 0.1656 0.1960 REMARK 3 5 2.9145 - 2.7057 1.00 2631 140 0.1571 0.1860 REMARK 3 6 2.7057 - 2.5462 1.00 2627 137 0.1567 0.1966 REMARK 3 7 2.5462 - 2.4187 1.00 2635 141 0.1549 0.1761 REMARK 3 8 2.4187 - 2.3135 1.00 2619 153 0.1601 0.2202 REMARK 3 9 2.3135 - 2.2244 1.00 2572 159 0.1593 0.2142 REMARK 3 10 2.2244 - 2.1477 1.00 2650 131 0.1642 0.2202 REMARK 3 11 2.1477 - 2.0805 1.00 2634 119 0.1663 0.1969 REMARK 3 12 2.0805 - 2.0211 1.00 2618 117 0.1720 0.2329 REMARK 3 13 2.0211 - 1.9679 1.00 2621 138 0.1692 0.1847 REMARK 3 14 1.9679 - 1.9199 1.00 2623 133 0.1811 0.2450 REMARK 3 15 1.9199 - 1.8762 1.00 2573 150 0.2005 0.3027 REMARK 3 16 1.8762 - 1.8363 0.99 2615 142 0.2341 0.2608 REMARK 3 17 1.8363 - 1.8000 0.94 2463 127 0.2591 0.2932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3884 REMARK 3 ANGLE : 1.332 5254 REMARK 3 CHIRALITY : 0.068 570 REMARK 3 PLANARITY : 0.007 673 REMARK 3 DIHEDRAL : 14.993 1441 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6740 15.3066 -23.5267 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.1401 REMARK 3 T33: 0.1741 T12: 0.0093 REMARK 3 T13: 0.0030 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.7481 L22: 1.1482 REMARK 3 L33: 0.5229 L12: -0.2180 REMARK 3 L13: -0.1129 L23: 0.0620 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.0028 S13: -0.2236 REMARK 3 S21: -0.0240 S22: -0.0484 S23: -0.0084 REMARK 3 S31: 0.1752 S32: -0.0301 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0991 48.0705 -35.0701 REMARK 3 T TENSOR REMARK 3 T11: 0.3099 T22: 0.1875 REMARK 3 T33: 0.2091 T12: 0.0587 REMARK 3 T13: 0.0119 T23: 0.0603 REMARK 3 L TENSOR REMARK 3 L11: 0.4459 L22: 0.1057 REMARK 3 L33: 0.0606 L12: -0.2171 REMARK 3 L13: -0.0482 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: 0.2694 S12: 0.1490 S13: 0.1185 REMARK 3 S21: -0.5148 S22: -0.4717 S23: -0.3073 REMARK 3 S31: -0.1927 S32: -0.1054 S33: -0.1072 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1861 52.7319 -26.2391 REMARK 3 T TENSOR REMARK 3 T11: 0.2048 T22: 0.1570 REMARK 3 T33: 0.1791 T12: 0.0421 REMARK 3 T13: -0.0067 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.2157 L22: 0.1746 REMARK 3 L33: 0.0206 L12: -0.1943 REMARK 3 L13: 0.0363 L23: -0.0967 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: 0.0266 S13: 0.0775 REMARK 3 S21: -0.0482 S22: 0.0250 S23: 0.0603 REMARK 3 S31: -0.0137 S32: -0.0937 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 227 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6266 43.8808 -26.2740 REMARK 3 T TENSOR REMARK 3 T11: 0.2049 T22: 0.1453 REMARK 3 T33: 0.1811 T12: 0.0305 REMARK 3 T13: 0.0332 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.3082 L22: 0.6684 REMARK 3 L33: 0.3637 L12: -0.2172 REMARK 3 L13: -0.0404 L23: 0.0617 REMARK 3 S TENSOR REMARK 3 S11: 0.1319 S12: 0.0246 S13: 0.0664 REMARK 3 S21: -0.1004 S22: -0.1100 S23: -0.2308 REMARK 3 S31: -0.0529 S32: -0.0153 S33: -0.0038 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9581 36.8787 -15.4354 REMARK 3 T TENSOR REMARK 3 T11: 0.1636 T22: 0.1645 REMARK 3 T33: 0.1129 T12: 0.0116 REMARK 3 T13: -0.0107 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.7218 L22: 1.1058 REMARK 3 L33: 0.7687 L12: -0.3568 REMARK 3 L13: -0.4579 L23: 0.0801 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: -0.0512 S13: 0.0194 REMARK 3 S21: 0.1254 S22: -0.0089 S23: -0.0572 REMARK 3 S31: -0.0503 S32: -0.0554 S33: 0.0402 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210746. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46859 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 34.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MGCL2, 0.1 M BIS-TRIS, 25% REMARK 280 PEG3350, PH 6.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 27.20350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.29100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 27.20350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.29100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 947 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1048 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 169 REMARK 465 GLY A 170 REMARK 465 ASN A 171 REMARK 465 GLU A 172 REMARK 465 ILE A 173 REMARK 465 HIS A 469 REMARK 465 LYS A 470 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 880 O HOH A 893 1.80 REMARK 500 O HOH A 603 O HOH A 987 1.94 REMARK 500 O HOH A 1090 O HOH A 1103 1.96 REMARK 500 O HOH A 979 O HOH A 1038 2.04 REMARK 500 NE2 GLN A 167 O HOH A 601 2.11 REMARK 500 OD1 ASN A 243 O HOH A 602 2.11 REMARK 500 O HOH A 1026 O HOH A 1099 2.12 REMARK 500 O ASN A 168 O HOH A 603 2.14 REMARK 500 O HOH A 960 O HOH A 975 2.16 REMARK 500 O HOH A 909 O HOH A 1055 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 637 O HOH A 637 2554 2.09 REMARK 500 O HOH A 986 O HOH A 990 3445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 98 10.11 59.37 REMARK 500 ALA A 103 75.94 -154.61 REMARK 500 ALA A 193 2.20 -67.76 REMARK 500 ASP A 254 -104.73 -120.79 REMARK 500 VAL A 290 -77.72 62.53 REMARK 500 HIS A 365 -2.24 85.29 REMARK 500 LEU A 378 118.90 -165.04 REMARK 500 LYS A 395 49.69 -82.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1110 DISTANCE = 5.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 254 OD1 REMARK 620 2 ASN A 255 OD1 89.1 REMARK 620 3 ASP A 292 OD1 94.5 90.2 REMARK 620 4 HOH A 713 O 174.3 91.3 91.2 REMARK 620 5 HOH A 850 O 87.4 91.9 177.2 86.9 REMARK 620 6 HOH A 710 O 85.6 171.4 83.4 94.7 94.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PT1 RELATED DB: PDB DBREF 5BY0 A 1 470 UNP Q04371 ARMT1_YEAST 1 470 SEQADV 5BY0 GLY A -1 UNP Q04371 EXPRESSION TAG SEQADV 5BY0 HIS A 0 UNP Q04371 EXPRESSION TAG SEQRES 1 A 472 GLY HIS MSE THR ILE PRO GLY ARG PHE MSE THR ILE ASP SEQRES 2 A 472 LYS GLY THR PHE GLY GLU TYR THR ALA SER THR ARG TRP SEQRES 3 A 472 PRO ILE ILE ILE GLN ASN ALA ILE ASP ASP LEU SER LYS SEQRES 4 A 472 HIS GLN GLU THR GLU LYS SER ASN GLY THR LYS PHE GLU SEQRES 5 A 472 GLN GLY GLU VAL ILE LYS LYS GLU LEU LYS GLU PHE ARG SEQRES 6 A 472 GLN GLU ILE ILE ASP ARG VAL PRO LEU ARG PRO PHE THR SEQRES 7 A 472 GLU GLU GLU ILE LYS ILE ALA ASN VAL PRO LEU SER PHE SEQRES 8 A 472 ASN GLU TYR LEU LYS LYS HIS PRO GLU VAL ASN TRP GLY SEQRES 9 A 472 ALA VAL GLU TRP LEU PHE SER GLU VAL TYR LEU TYR ARG SEQRES 10 A 472 ARG VAL ASN VAL LEU PHE GLN ARG GLN CYS GLU TRP ALA SEQRES 11 A 472 LYS PHE ASP ILE PHE ASN ARG LEU LYS GLN SER THR PHE SEQRES 12 A 472 GLU SER SER PHE TYR GLY VAL VAL GLU LEU ALA LEU ARG SEQRES 13 A 472 TYR GLU ASN LEU LEU PRO GLN LEU ARG GLU MSE LYS GLN SEQRES 14 A 472 ASN PRO GLY ASN GLU ILE ASP ASP ILE LEU LYS VAL LEU SEQRES 15 A 472 PHE LYS GLU PHE ILE GLU ILE SER LEU TRP GLY ASN ALA SEQRES 16 A 472 THR ASP LEU SER LEU LEU THR ASN ALA THR LEU GLU ASP SEQRES 17 A 472 ILE LYS SER ILE GLN GLY ALA LYS ALA ARG ALA ALA SER SEQRES 18 A 472 GLU SER LYS ILE VAL VAL ASN ASP THR GLU LYS ALA TRP SEQRES 19 A 472 GLU VAL LEU THR LYS ALA ARG ALA ASP ALA ASN SER ARG SEQRES 20 A 472 GLU ILE ARG VAL ASP PHE VAL LEU ASP ASN SER GLY PHE SEQRES 21 A 472 GLU LEU TYR ALA ASP LEU MSE LEU ALA ALA PHE LEU LEU SEQRES 22 A 472 GLN SER GLY LEU ALA THR LYS CYS ILE PHE HIS ALA LYS SEQRES 23 A 472 ASP ILE PRO TYR MSE VAL SER ASP VAL MSE LEU LYS ASP SEQRES 24 A 472 PHE ASP ILE LEU VAL HIS ASP LEU ARG ASP ARG GLU PHE SEQRES 25 A 472 PHE PRO SER GLY GLU PRO SER THR LYS GLU SER ARG ALA SEQRES 26 A 472 LEU ASP LEU PHE ALA GLY GLU MSE GLU LYS PHE VAL SER SEQRES 27 A 472 SER GLY LYS ILE GLU PHE ARG GLU ASP SER PHE TRP THR SEQRES 28 A 472 THR GLU LEU ASP TYR TRP ASN LEU ASP ALA ASN GLU THR SEQRES 29 A 472 LYS TYR HIS GLY SER ILE LEU HIS LYS ASP LEU GLN LYS SEQRES 30 A 472 SER ASN LEU VAL ILE PHE LYS GLY ASP LEU ASN TYR ARG SEQRES 31 A 472 LYS LEU THR GLY ASP ARG LYS TRP PRO ARG THR THR LYS SEQRES 32 A 472 TRP GLU THR ALA ILE GLY PRO LEU ALA THR ASN GLY ILE SEQRES 33 A 472 THR SER LEU SER LEU ARG THR CYS LYS ALA ASP VAL GLN SEQRES 34 A 472 VAL ALA LEU PRO GLU GLY LEU ASP ALA LYS LEU SER GLN SEQRES 35 A 472 GLU TRP GLU LYS GLU ASN PRO GLY ARG GLY SER TRP TRP SEQRES 36 A 472 CYS CYS SER GLY LYS TRP ALA VAL ILE CYS PHE CYS SER SEQRES 37 A 472 GLY ILE HIS LYS MODRES 5BY0 MSE A 1 MET MODIFIED RESIDUE MODRES 5BY0 MSE A 8 MET MODIFIED RESIDUE MODRES 5BY0 MSE A 165 MET MODIFIED RESIDUE MODRES 5BY0 MSE A 265 MET MODIFIED RESIDUE MODRES 5BY0 MSE A 289 MET MODIFIED RESIDUE MODRES 5BY0 MSE A 294 MET MODIFIED RESIDUE MODRES 5BY0 MSE A 331 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 8 8 HET MSE A 165 8 HET MSE A 265 8 HET MSE A 289 8 HET MSE A 294 8 HET MSE A 331 8 HET MG A 501 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 HOH *510(H2 O) HELIX 1 AA1 THR A 14 GLU A 40 1 27 HELIX 2 AA2 GLY A 46 ASP A 68 1 23 HELIX 3 AA3 THR A 76 ASN A 84 1 9 HELIX 4 AA4 LEU A 87 HIS A 96 1 10 HELIX 5 AA5 GLU A 105 GLN A 124 1 20 HELIX 6 AA6 CYS A 125 ALA A 128 5 4 HELIX 7 AA7 PHE A 133 SER A 143 1 11 HELIX 8 AA8 SER A 144 ASN A 168 1 25 HELIX 9 AA9 ASP A 175 GLY A 191 1 17 HELIX 10 AB1 ASN A 192 THR A 194 5 3 HELIX 11 AB2 ASP A 195 THR A 200 1 6 HELIX 12 AB3 THR A 203 SER A 209 1 7 HELIX 13 AB4 SER A 209 SER A 221 1 13 HELIX 14 AB5 ASP A 227 ASP A 241 1 15 HELIX 15 AB6 GLY A 257 SER A 273 1 17 HELIX 16 AB7 MSE A 294 ASP A 307 1 14 HELIX 17 AB8 THR A 318 SER A 337 1 20 HELIX 18 AB9 SER A 346 THR A 350 5 5 HELIX 19 AC1 ASP A 353 LEU A 357 5 5 HELIX 20 AC2 HIS A 365 GLN A 374 1 10 HELIX 21 AC3 GLY A 383 GLY A 392 1 10 HELIX 22 AC4 LYS A 401 ILE A 406 1 6 HELIX 23 AC5 GLY A 407 THR A 411 5 5 HELIX 24 AC6 GLY A 433 LYS A 444 1 12 HELIX 25 AC7 ARG A 449 SER A 456 5 8 SHEET 1 AA1 7 ILE A 223 ASN A 226 0 SHEET 2 AA1 7 ALA A 460 CYS A 465 1 O ILE A 462 N VAL A 225 SHEET 3 AA1 7 SER A 416 THR A 421 -1 N SER A 418 O CYS A 463 SHEET 4 AA1 7 LEU A 378 LYS A 382 1 N PHE A 381 O LEU A 417 SHEET 5 AA1 7 ARG A 248 VAL A 252 1 N ASP A 250 O ILE A 380 SHEET 6 AA1 7 LYS A 278 ALA A 283 1 O HIS A 282 N PHE A 251 SHEET 7 AA1 7 ILE A 340 GLU A 344 1 O ARG A 343 N ALA A 283 LINK C HIS A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N THR A 2 1555 1555 1.32 LINK C PHE A 7 N MSE A 8 1555 1555 1.34 LINK C MSE A 8 N THR A 9 1555 1555 1.34 LINK C GLU A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N LYS A 166 1555 1555 1.33 LINK OD1 ASP A 254 MG MG A 501 1555 1555 2.08 LINK OD1 ASN A 255 MG MG A 501 1555 1555 2.10 LINK C LEU A 264 N MSE A 265 1555 1555 1.33 LINK C MSE A 265 N LEU A 266 1555 1555 1.32 LINK C TYR A 288 N MSE A 289 1555 1555 1.33 LINK C MSE A 289 N VAL A 290 1555 1555 1.33 LINK OD1 ASP A 292 MG MG A 501 1555 1555 1.92 LINK C VAL A 293 N MSE A 294 1555 1555 1.32 LINK C MSE A 294 N LEU A 295 1555 1555 1.33 LINK C GLU A 330 N MSE A 331 1555 1555 1.33 LINK C MSE A 331 N GLU A 332 1555 1555 1.33 LINK MG MG A 501 O HOH A 713 1555 1555 2.06 LINK MG MG A 501 O HOH A 850 1555 1555 2.09 LINK MG MG A 501 O HOH A 710 1555 1555 2.14 SITE 1 AC1 6 ASP A 254 ASN A 255 ASP A 292 HOH A 710 SITE 2 AC1 6 HOH A 713 HOH A 850 CRYST1 54.407 108.582 88.234 90.00 97.04 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018380 0.000000 0.002269 0.00000 SCALE2 0.000000 0.009210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011420 0.00000