HEADER RNA BINDING PROTEIN/RNA 11-JUN-15 5BZV TITLE CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF YEAST PUF5P BOUND TO TITLE 2 SMX2 RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR PROTEIN MPT5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNO RESIDUES 201-600; COMPND 5 SYNONYM: PROTEIN HTR1,PUMILIO HOMOLOGY DOMAIN FAMILY MEMBER 5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*UP*GP*UP*AP*CP*UP*AP*UP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: MPT5, HTR1, PUF5, YGL178W, BIC834; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS PUF RNA-BINDING DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.QIU,T.M.T.HALL REVDAT 3 27-SEP-23 5BZV 1 REMARK REVDAT 2 30-SEP-15 5BZV 1 JRNL REVDAT 1 23-SEP-15 5BZV 0 JRNL AUTH D.WILINSKI,C.QIU,C.P.LAPOINTE,M.NEVIL,Z.T.CAMPBELL, JRNL AUTH 2 T.M.TANAKA HALL,M.WICKENS JRNL TITL RNA REGULATORY NETWORKS DIVERSIFIED THROUGH CURVATURE OF THE JRNL TITL 2 PUF PROTEIN SCAFFOLD. JRNL REF NAT COMMUN V. 6 8213 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26364903 JRNL DOI 10.1038/NCOMMS9213 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 22610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0617 - 5.6695 0.89 1552 150 0.1896 0.1734 REMARK 3 2 5.6695 - 4.5014 0.91 1484 145 0.1702 0.2039 REMARK 3 3 4.5014 - 3.9327 0.92 1476 143 0.1564 0.2307 REMARK 3 4 3.9327 - 3.5733 0.93 1459 141 0.1738 0.2152 REMARK 3 5 3.5733 - 3.3173 0.93 1468 144 0.1913 0.2371 REMARK 3 6 3.3173 - 3.1218 0.94 1476 142 0.2018 0.2830 REMARK 3 7 3.1218 - 2.9655 0.94 1454 142 0.2123 0.2420 REMARK 3 8 2.9655 - 2.8364 0.95 1466 141 0.2122 0.2585 REMARK 3 9 2.8364 - 2.7272 0.95 1478 144 0.2058 0.2857 REMARK 3 10 2.7272 - 2.6331 0.95 1464 142 0.2047 0.2747 REMARK 3 11 2.6331 - 2.5508 0.95 1441 139 0.1995 0.2643 REMARK 3 12 2.5508 - 2.4779 0.96 1483 145 0.1972 0.2341 REMARK 3 13 2.4779 - 2.4127 0.96 1474 143 0.2042 0.2628 REMARK 3 14 2.4127 - 2.3538 0.95 1436 138 0.1988 0.2514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3191 REMARK 3 ANGLE : 0.978 4356 REMARK 3 CHIRALITY : 0.064 534 REMARK 3 PLANARITY : 0.004 511 REMARK 3 DIHEDRAL : 13.721 1214 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0291 37.8266 -33.5985 REMARK 3 T TENSOR REMARK 3 T11: 0.3797 T22: 0.6609 REMARK 3 T33: 0.2295 T12: -0.0158 REMARK 3 T13: 0.0007 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 5.9178 L22: 4.3515 REMARK 3 L33: 2.5486 L12: -0.8370 REMARK 3 L13: -3.0953 L23: -1.5254 REMARK 3 S TENSOR REMARK 3 S11: 0.2266 S12: 0.8146 S13: 0.0482 REMARK 3 S21: -0.0468 S22: -0.0499 S23: -0.0831 REMARK 3 S31: -0.4268 S32: 0.6438 S33: -0.1525 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8810 29.2679 -19.0397 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.2463 REMARK 3 T33: 0.2014 T12: 0.0197 REMARK 3 T13: 0.0252 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 1.7083 L22: 1.4172 REMARK 3 L33: 6.0044 L12: 0.7002 REMARK 3 L13: -0.0331 L23: -0.9634 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: 0.3102 S13: -0.0801 REMARK 3 S21: -0.1528 S22: 0.0130 S23: 0.0645 REMARK 3 S31: 0.1620 S32: -0.1832 S33: 0.0158 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7613 30.0186 -1.7582 REMARK 3 T TENSOR REMARK 3 T11: 0.1868 T22: 0.2192 REMARK 3 T33: 0.1690 T12: -0.0058 REMARK 3 T13: 0.0699 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 2.7948 L22: 4.3208 REMARK 3 L33: 4.4193 L12: 0.0754 REMARK 3 L13: -0.4115 L23: 1.0373 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: -0.1440 S13: 0.2296 REMARK 3 S21: 0.0633 S22: 0.1339 S23: -0.2353 REMARK 3 S31: 0.0790 S32: 0.1816 S33: -0.1263 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1457 33.5816 11.2194 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.2460 REMARK 3 T33: 0.1814 T12: -0.0235 REMARK 3 T13: 0.0531 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 1.4365 L22: 2.7202 REMARK 3 L33: 3.3559 L12: 0.4137 REMARK 3 L13: 0.1106 L23: 1.6089 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: -0.1304 S13: -0.0958 REMARK 3 S21: 0.4136 S22: 0.0686 S23: 0.0539 REMARK 3 S31: 0.2992 S32: 0.1403 S33: 0.0200 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 426 THROUGH 449 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3869 37.7461 26.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.3681 T22: 0.3782 REMARK 3 T33: 0.2520 T12: 0.0015 REMARK 3 T13: 0.0651 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 7.6362 L22: 8.4170 REMARK 3 L33: 8.8480 L12: 6.5837 REMARK 3 L13: 6.4309 L23: 6.9517 REMARK 3 S TENSOR REMARK 3 S11: 0.0952 S12: -0.3893 S13: -0.3542 REMARK 3 S21: 0.3595 S22: 0.0520 S23: -0.1542 REMARK 3 S31: 0.3960 S32: -0.2021 S33: -0.1714 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 450 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0005 46.1870 23.2135 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: 0.2105 REMARK 3 T33: 0.2989 T12: -0.0654 REMARK 3 T13: 0.0760 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 7.5168 L22: 2.1749 REMARK 3 L33: 3.0276 L12: 1.9608 REMARK 3 L13: -2.9153 L23: -0.1956 REMARK 3 S TENSOR REMARK 3 S11: -0.2125 S12: 0.2440 S13: -0.1976 REMARK 3 S21: 0.1690 S22: -0.0107 S23: 0.4829 REMARK 3 S31: 0.1766 S32: -0.1401 S33: 0.2095 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 556 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6800 49.0839 30.7901 REMARK 3 T TENSOR REMARK 3 T11: 0.4752 T22: 0.2766 REMARK 3 T33: 0.3019 T12: 0.0089 REMARK 3 T13: 0.1523 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.2716 L22: 3.1191 REMARK 3 L33: 3.2048 L12: -0.2361 REMARK 3 L13: 0.7472 L23: 1.6620 REMARK 3 S TENSOR REMARK 3 S11: -0.2630 S12: -0.3972 S13: -0.2905 REMARK 3 S21: 0.4923 S22: 0.0425 S23: 0.4821 REMARK 3 S31: -0.0269 S32: -0.0427 S33: 0.1517 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 557 THROUGH 599 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8842 59.8239 34.9834 REMARK 3 T TENSOR REMARK 3 T11: 0.5344 T22: 0.2606 REMARK 3 T33: 0.3438 T12: 0.0368 REMARK 3 T13: 0.1489 T23: -0.0910 REMARK 3 L TENSOR REMARK 3 L11: 3.4753 L22: 1.1399 REMARK 3 L33: 4.3313 L12: -0.4583 REMARK 3 L13: -0.4292 L23: -0.5947 REMARK 3 S TENSOR REMARK 3 S11: -0.3598 S12: -0.3371 S13: 0.1481 REMARK 3 S21: 0.6844 S22: 0.1236 S23: 0.4115 REMARK 3 S31: -0.2202 S32: -0.1236 S33: 0.1709 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2045 49.6965 2.6953 REMARK 3 T TENSOR REMARK 3 T11: 0.6370 T22: 0.4040 REMARK 3 T33: 0.2676 T12: -0.1614 REMARK 3 T13: 0.0516 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.0473 L22: 0.0060 REMARK 3 L33: 7.7983 L12: -0.0140 REMARK 3 L13: -0.6071 L23: 0.1727 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 0.0964 S13: 0.1348 REMARK 3 S21: -0.9540 S22: 0.2157 S23: 0.0968 REMARK 3 S31: -0.3016 S32: 0.4927 S33: -0.6898 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BYM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20% PEG3350, 0.1M CBTP, PH 7.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.78400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.56800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.67600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 139.46000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.89200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.78400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 111.56800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 139.46000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.67600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.89200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 201 REMARK 465 MET A 202 REMARK 465 VAL A 203 REMARK 465 ASN A 474 REMARK 465 ASN A 475 REMARK 465 ASN A 476 REMARK 465 GLY A 477 REMARK 465 GLY A 478 REMARK 465 ALA A 479 REMARK 465 SER A 480 REMARK 465 GLN A 481 REMARK 465 ARG A 482 REMARK 465 THR A 483 REMARK 465 ALA A 484 REMARK 465 VAL A 485 REMARK 465 ALA A 536 REMARK 465 TYR A 537 REMARK 465 ASN A 538 REMARK 465 LYS A 539 REMARK 465 ASN A 540 REMARK 465 SER A 541 REMARK 465 ASN A 542 REMARK 465 ALA A 543 REMARK 465 ILE A 544 REMARK 465 GLY A 545 REMARK 465 GLN A 546 REMARK 465 ASN A 547 REMARK 465 SER A 548 REMARK 465 SER A 549 REMARK 465 SER A 550 REMARK 465 THR A 551 REMARK 465 LEU A 552 REMARK 465 ASN A 553 REMARK 465 TYR A 554 REMARK 465 GLY A 555 REMARK 465 GLY A 600 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 222 O2' A B 9 2.08 REMARK 500 O LYS A 580 O HOH A 701 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 367 -114.47 48.71 REMARK 500 TYR A 531 18.36 -141.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 836 DISTANCE = 6.46 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BYM RELATED DB: PDB REMARK 900 5BYM CONTAINS THE SAME PROTEIN COMPLEXED WITH THE SAME RNA, BUT IT REMARK 900 WAS CRYSTALLIZED IN A DIFFERENT SPACE GROUP DBREF 5BZV A 201 600 UNP P39016 MPT5_YEAST 201 600 DBREF 5BZV B 1 9 PDB 5BZV 5BZV 1 9 SEQRES 1 A 400 SER MET VAL GLU ILE SER ALA LEU PRO LEU ARG ASP LEU SEQRES 2 A 400 ASP TYR ILE LYS LEU ALA THR ASP GLN PHE GLY CYS ARG SEQRES 3 A 400 PHE LEU GLN LYS LYS LEU GLU THR PRO SER GLU SER ASN SEQRES 4 A 400 MET VAL ARG ASP LEU MET TYR GLU GLN ILE LYS PRO PHE SEQRES 5 A 400 PHE LEU ASP LEU ILE LEU ASP PRO PHE GLY ASN TYR LEU SEQRES 6 A 400 VAL GLN LYS LEU CYS ASP TYR LEU THR ALA GLU GLN LYS SEQRES 7 A 400 THR LEU LEU ILE GLN THR ILE TYR PRO ASN VAL PHE GLN SEQRES 8 A 400 ILE SER ILE ASN GLN TYR GLY THR ARG SER LEU GLN LYS SEQRES 9 A 400 ILE ILE ASP THR VAL ASP ASN GLU VAL GLN ILE ASP LEU SEQRES 10 A 400 ILE ILE LYS GLY PHE SER GLN GLU PHE THR SER ILE GLU SEQRES 11 A 400 GLN VAL VAL THR LEU ILE ASN ASP LEU ASN GLY ASN HIS SEQRES 12 A 400 VAL ILE GLN LYS CYS ILE PHE LYS PHE SER PRO SER LYS SEQRES 13 A 400 PHE GLY PHE ILE ILE ASP ALA ILE VAL GLU GLN ASN ASN SEQRES 14 A 400 ILE ILE THR ILE SER THR HIS LYS HIS GLY CYS CYS VAL SEQRES 15 A 400 LEU GLN LYS LEU LEU SER VAL CYS THR LEU GLN GLN ILE SEQRES 16 A 400 PHE LYS ILE SER VAL LYS ILE VAL GLN PHE LEU PRO GLY SEQRES 17 A 400 LEU ILE ASN ASP GLN PHE GLY ASN TYR ILE ILE GLN PHE SEQRES 18 A 400 LEU LEU ASP ILE LYS GLU LEU ASP PHE TYR LEU LEU ALA SEQRES 19 A 400 GLU LEU PHE ASN ARG LEU SER ASN GLU LEU CYS GLN LEU SEQRES 20 A 400 SER CYS LEU LYS PHE SER SER ASN VAL VAL GLU LYS PHE SEQRES 21 A 400 ILE LYS LYS LEU PHE ARG ILE ILE THR GLY PHE ILE VAL SEQRES 22 A 400 ASN ASN ASN GLY GLY ALA SER GLN ARG THR ALA VAL ALA SEQRES 23 A 400 SER ASP ASP VAL ILE ASN ALA SER MET ASN ILE LEU LEU SEQRES 24 A 400 THR THR ILE ASP ILE PHE THR VAL ASN LEU ASN VAL LEU SEQRES 25 A 400 ILE ARG ASP ASN PHE GLY ASN TYR ALA LEU GLN THR LEU SEQRES 26 A 400 LEU ASP VAL LYS ASN TYR SER PRO LEU LEU ALA TYR ASN SEQRES 27 A 400 LYS ASN SER ASN ALA ILE GLY GLN ASN SER SER SER THR SEQRES 28 A 400 LEU ASN TYR GLY ASN PHE CYS ASN ASP PHE SER LEU LYS SEQRES 29 A 400 ILE GLY ASN LEU ILE VAL LEU THR LYS GLU LEU LEU PRO SEQRES 30 A 400 SER ILE LYS THR THR SER TYR ALA LYS LYS ILE LYS LEU SEQRES 31 A 400 LYS VAL LYS ALA TYR ALA GLU ALA THR GLY SEQRES 1 B 9 U G U A C U A U A FORMUL 3 HOH *145(H2 O) HELIX 1 AA1 PRO A 209 LEU A 213 5 5 HELIX 2 AA2 ASP A 214 ASP A 221 1 8 HELIX 3 AA3 ASP A 221 GLU A 233 1 13 HELIX 4 AA4 THR A 234 LYS A 250 1 17 HELIX 5 AA5 PHE A 252 LEU A 258 1 7 HELIX 6 AA6 PHE A 261 CYS A 270 1 10 HELIX 7 AA7 THR A 274 TYR A 286 1 13 HELIX 8 AA8 ASN A 288 ILE A 294 1 7 HELIX 9 AA9 TYR A 297 THR A 308 1 12 HELIX 10 AB1 ASN A 311 SER A 323 1 13 HELIX 11 AB2 SER A 328 ASP A 338 1 11 HELIX 12 AB3 ASN A 340 PHE A 352 1 13 HELIX 13 AB4 SER A 353 LYS A 356 5 4 HELIX 14 AB5 PHE A 357 VAL A 365 1 9 HELIX 15 AB6 ASN A 368 THR A 375 1 8 HELIX 16 AB7 HIS A 378 CYS A 390 1 13 HELIX 17 AB8 THR A 391 PHE A 405 1 15 HELIX 18 AB9 LEU A 406 LEU A 409 5 4 HELIX 19 AC1 PHE A 414 ASP A 424 1 11 HELIX 20 AC2 ILE A 425 GLU A 427 5 3 HELIX 21 AC3 LEU A 428 SER A 441 1 14 HELIX 22 AC4 GLU A 443 CYS A 449 1 7 HELIX 23 AC5 PHE A 452 VAL A 473 1 22 HELIX 24 AC6 SER A 487 ASN A 508 1 22 HELIX 25 AC7 ASN A 508 ILE A 513 1 6 HELIX 26 AC8 PHE A 517 ASP A 527 1 11 HELIX 27 AC9 VAL A 528 LEU A 535 5 8 HELIX 28 AD1 PHE A 557 LEU A 576 1 20 HELIX 29 AD2 PRO A 577 LYS A 580 5 4 HELIX 30 AD3 TYR A 584 THR A 599 1 16 CRYST1 106.930 106.930 167.352 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009352 0.005399 0.000000 0.00000 SCALE2 0.000000 0.010799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005975 0.00000