HEADER IMMUNE SYSTEM 11-JUN-15 5BZW TITLE CRYSTAL STRUCTURE OF PCDN-27B, AN ANTIBODY FROM THE PCDN FAMILY OF TITLE 2 HIV-1 ANTIBODIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2B3 HIV ANTIBODY LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: COMPND 6 EIVLTQSPGTLSLSPGERATLSCRASQSVSAKNLAWYQQKPGQTPRLLMYGVSLRNTGVP COMPND 7 DRFSGSGSGTDFTLTISRLEPEDSAVYFCQQYGTSPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT COMPND 8 ASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTH COMPND 9 QGLSSPVTKSFNRGEC; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: 2B3 HIV ANTIBODY HEAVY CHAIN; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: COMPND 15 QVQLQQWGAGLLKPSETLSLTCAVYNESLSAFSWSWIRQFPGQGLEWIGEIDHTTSSNYN COMPND 16 PSLKRRINISIDTSKKQFSLKLYSVTAADTAVYYCARGGRKVYHAYWSGYVNNCFDPWGQ COMPND 17 GTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSG COMPND 18 LYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCD SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HIV, ANTIBODY, FAB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR F.GARCES,I.A.WILSON REVDAT 5 27-SEP-23 5BZW 1 HETSYN REVDAT 4 29-JUL-20 5BZW 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 10-OCT-18 5BZW 1 COMPND JRNL REMARK REVDAT 2 27-JUL-16 5BZW 1 REMARK REVDAT 1 25-MAY-16 5BZW 0 JRNL AUTH D.T.MACLEOD,N.M.CHOI,B.BRINEY,F.GARCES,L.S.VER,E.LANDAIS, JRNL AUTH 2 B.MURRELL,T.WRIN,W.KILEMBE,C.H.LIANG,A.RAMOS,C.B.BIAN, JRNL AUTH 3 L.WICKRAMASINGHE,L.KONG,K.EREN,C.Y.WU,C.H.WONG, JRNL AUTH 4 S.L.KOSAKOVSKY POND,I.A.WILSON,D.R.BURTON,P.POIGNARD JRNL TITL EARLY ANTIBODY LINEAGE DIVERSIFICATION AND INDEPENDENT LIMB JRNL TITL 2 MATURATION LEAD TO BROAD HIV-1 NEUTRALIZATION TARGETING THE JRNL TITL 3 ENV HIGH-MANNOSE PATCH. JRNL REF IMMUNITY V. 44 1215 2016 JRNL REFN ISSN 1097-4180 JRNL PMID 27192579 JRNL DOI 10.1016/J.IMMUNI.2016.04.016 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 11669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6337 - 4.6022 0.99 2925 148 0.2119 0.2275 REMARK 3 2 4.6022 - 3.6534 1.00 2797 128 0.2107 0.2991 REMARK 3 3 3.6534 - 3.1918 0.99 2669 156 0.2652 0.3473 REMARK 3 4 3.1918 - 2.9000 1.00 2692 154 0.2820 0.3641 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3450 REMARK 3 ANGLE : 0.664 4692 REMARK 3 CHIRALITY : 0.026 532 REMARK 3 PLANARITY : 0.004 601 REMARK 3 DIHEDRAL : 11.545 1235 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 273.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11743 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 43.629 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.28000 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 0.99300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RRH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 10% (V/V) ETHYLENE REMARK 280 GLYCOL AND 0.2M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.43367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.86733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.65050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 176.08417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.21683 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.43367 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 140.86733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 176.08417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 105.65050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.21683 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 214 REMARK 465 CYS B 216 REMARK 465 ASP B 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 100A CG ND1 CD2 CE1 NE2 REMARK 470 TRP B 100D CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 100D CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 S SO4 A 301 O HOH A 401 0.33 REMARK 500 O1 SO4 A 301 O HOH A 401 1.16 REMARK 500 O3 SO4 A 301 O HOH A 401 1.49 REMARK 500 O2 SO4 A 301 O HOH A 401 1.64 REMARK 500 O4 SO4 A 301 O HOH A 401 1.69 REMARK 500 ND2 ASN B 26 O5 NAG B 305 1.72 REMARK 500 CB PRO A 40 OE1 GLU A 165 1.95 REMARK 500 OD1 ASN B 60 OG SER B 62 1.98 REMARK 500 CB CYS B 22 SG CYS B 92 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 SO4 B 304 O4 SO4 B 304 8555 0.14 REMARK 500 O1 SO4 B 304 O3 SO4 B 304 8555 0.16 REMARK 500 S SO4 B 304 O4 SO4 B 304 8555 1.41 REMARK 500 S SO4 B 304 O1 SO4 B 304 8555 1.44 REMARK 500 S SO4 B 304 O3 SO4 B 304 8555 1.51 REMARK 500 S SO4 B 304 O2 SO4 B 304 8555 1.53 REMARK 500 CB SER A 12 NZ LYS B 206 5554 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 8 C - N - CD ANGL. DEV. = 17.4 DEGREES REMARK 500 ASP A 60 N - CA - C ANGL. DEV. = 25.6 DEGREES REMARK 500 ASP A 60 CA - C - O ANGL. DEV. = 13.6 DEGREES REMARK 500 ASP A 60 CA - C - N ANGL. DEV. = -16.3 DEGREES REMARK 500 ASN A 138 N - CA - C ANGL. DEV. = 22.6 DEGREES REMARK 500 PRO A 141 C - N - CD ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO A 141 CA - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 PRO B 102 C - N - CD ANGL. DEV. = 18.6 DEGREES REMARK 500 PRO B 147 C - N - CD ANGL. DEV. = 20.3 DEGREES REMARK 500 PRO B 149 C - N - CD ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 51 -59.90 72.74 REMARK 500 THR A 93 -156.29 -117.42 REMARK 500 LYS A 169 -60.71 -93.85 REMARK 500 VAL B 100H -69.79 -98.90 REMARK 500 ASP B 144 76.56 57.35 REMARK 500 PRO B 147 -156.90 -87.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BZD RELATED DB: PDB DBREF 5BZW A 1 214 PDB 5BZW 5BZW 1 214 DBREF 5BZW B 1 217 PDB 5BZW 5BZW 1 217 SEQRES 1 A 214 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 A 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 A 214 GLN SER VAL SER ALA LYS ASN LEU ALA TRP TYR GLN GLN SEQRES 4 A 214 LYS PRO GLY GLN THR PRO ARG LEU LEU MET TYR GLY VAL SEQRES 5 A 214 SER LEU ARG ASN THR GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 A 214 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 A 214 LEU GLU PRO GLU ASP SER ALA VAL TYR PHE CYS GLN GLN SEQRES 8 A 214 TYR GLY THR SER PRO THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 A 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 A 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 A 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 A 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 A 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 A 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 A 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 A 214 PHE ASN ARG GLY GLU CYS SEQRES 1 B 232 GLN VAL GLN LEU GLN GLN TRP GLY ALA GLY LEU LEU LYS SEQRES 2 B 232 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL TYR ASN SEQRES 3 B 232 GLU SER LEU SER ALA PHE SER TRP SER TRP ILE ARG GLN SEQRES 4 B 232 PHE PRO GLY GLN GLY LEU GLU TRP ILE GLY GLU ILE ASP SEQRES 5 B 232 HIS THR THR SER SER ASN TYR ASN PRO SER LEU LYS ARG SEQRES 6 B 232 ARG ILE ASN ILE SER ILE ASP THR SER LYS LYS GLN PHE SEQRES 7 B 232 SER LEU LYS LEU TYR SER VAL THR ALA ALA ASP THR ALA SEQRES 8 B 232 VAL TYR TYR CYS ALA ARG GLY GLY ARG LYS VAL TYR HIS SEQRES 9 B 232 ALA TYR TRP SER GLY TYR VAL ASN ASN CYS PHE ASP PRO SEQRES 10 B 232 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER SEQRES 11 B 232 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 12 B 232 LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU SEQRES 13 B 232 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 14 B 232 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 15 B 232 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 16 B 232 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 17 B 232 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 18 B 232 VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP HET SO4 A 301 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET NAG B 305 14 HETNAM SO4 SULFATE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 NAG C8 H15 N O6 FORMUL 9 HOH *(H2 O) HELIX 1 AA1 SER A 29 LYS A 31 5 3 HELIX 2 AA2 SER A 121 LYS A 126 1 6 HELIX 3 AA3 LYS A 183 HIS A 189 1 7 HELIX 4 AA4 PRO B 61 ARG B 65 5 5 HELIX 5 AA5 THR B 83 THR B 87 5 5 HELIX 6 AA6 LYS B 129 GLY B 133 5 5 HELIX 7 AA7 SER B 156 ALA B 158 5 3 HELIX 8 AA8 SER B 187 LEU B 189 5 3 SHEET 1 AA1 3 LEU A 4 SER A 7 0 SHEET 2 AA1 3 ALA A 19 VAL A 28 -1 O ARG A 24 N THR A 5 SHEET 3 AA1 3 PHE A 62 ILE A 75 -1 O LEU A 73 N LEU A 21 SHEET 1 AA2 6 THR A 10 LEU A 13 0 SHEET 2 AA2 6 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AA2 6 ALA A 84 GLN A 90 -1 N ALA A 84 O VAL A 104 SHEET 4 AA2 6 LEU A 33 GLN A 38 -1 N ALA A 34 O GLN A 89 SHEET 5 AA2 6 ARG A 45 TYR A 49 -1 O MET A 48 N TRP A 35 SHEET 6 AA2 6 LEU A 53 ARG A 54 -1 O LEU A 53 N TYR A 49 SHEET 1 AA3 4 THR A 10 LEU A 13 0 SHEET 2 AA3 4 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AA3 4 ALA A 84 GLN A 90 -1 N ALA A 84 O VAL A 104 SHEET 4 AA3 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AA4 4 SER A 114 PHE A 118 0 SHEET 2 AA4 4 THR A 129 PHE A 139 -1 O LEU A 135 N PHE A 116 SHEET 3 AA4 4 TYR A 173 SER A 182 -1 O LEU A 181 N ALA A 130 SHEET 4 AA4 4 SER A 159 VAL A 163 -1 N GLN A 160 O THR A 178 SHEET 1 AA5 4 ALA A 153 LEU A 154 0 SHEET 2 AA5 4 LYS A 145 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 AA5 4 VAL A 191 THR A 197 -1 O THR A 197 N LYS A 145 SHEET 4 AA5 4 VAL A 205 ASN A 210 -1 O LYS A 207 N CYS A 194 SHEET 1 AA6 4 LEU B 4 GLY B 8 0 SHEET 2 AA6 4 LEU B 18 VAL B 24 -1 O ALA B 23 N GLN B 5 SHEET 3 AA6 4 GLN B 77 LEU B 82 -1 O LEU B 82 N LEU B 18 SHEET 4 AA6 4 ILE B 67 ASP B 72 -1 N ASP B 72 O GLN B 77 SHEET 1 AA7 6 LEU B 11 LEU B 12 0 SHEET 2 AA7 6 THR B 107 VAL B 111 1 O THR B 110 N LEU B 12 SHEET 3 AA7 6 ALA B 88 VAL B 99 -1 N ALA B 88 O VAL B 109 SHEET 4 AA7 6 PHE B 32 GLN B 39 -1 N ILE B 37 O TYR B 91 SHEET 5 AA7 6 LEU B 45 ILE B 51 -1 O ILE B 48 N TRP B 36 SHEET 6 AA7 6 SER B 57 TYR B 59 -1 O ASN B 58 N GLU B 50 SHEET 1 AA8 4 LEU B 11 LEU B 12 0 SHEET 2 AA8 4 THR B 107 VAL B 111 1 O THR B 110 N LEU B 12 SHEET 3 AA8 4 ALA B 88 VAL B 99 -1 N ALA B 88 O VAL B 109 SHEET 4 AA8 4 GLY B 100F TYR B 100G-1 O GLY B 100F N VAL B 99 SHEET 1 AA9 4 SER B 120 LEU B 124 0 SHEET 2 AA9 4 THR B 135 TYR B 145 -1 O LEU B 141 N PHE B 122 SHEET 3 AA9 4 TYR B 176 PRO B 185 -1 O VAL B 184 N ALA B 136 SHEET 4 AA9 4 VAL B 163 THR B 165 -1 N HIS B 164 O VAL B 181 SHEET 1 AB1 4 SER B 120 LEU B 124 0 SHEET 2 AB1 4 THR B 135 TYR B 145 -1 O LEU B 141 N PHE B 122 SHEET 3 AB1 4 TYR B 176 PRO B 185 -1 O VAL B 184 N ALA B 136 SHEET 4 AB1 4 VAL B 169 LEU B 170 -1 N VAL B 169 O SER B 177 SHEET 1 AB2 3 THR B 151 TRP B 154 0 SHEET 2 AB2 3 TYR B 194 HIS B 200 -1 O ASN B 197 N SER B 153 SHEET 3 AB2 3 THR B 205 VAL B 211 -1 O VAL B 207 N VAL B 198 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 4 CYS B 140 CYS B 196 1555 1555 2.03 LINK ND2 ASN B 26 C1 NAG B 305 1555 1555 1.29 CISPEP 1 SER A 7 PRO A 8 0 -7.83 CISPEP 2 TYR A 140 PRO A 141 0 1.76 CISPEP 3 HIS B 100A ALA B 100B 0 3.92 CISPEP 4 ALA B 100B TYR B 100C 0 -5.91 CISPEP 5 ASP B 101 PRO B 102 0 -6.98 CISPEP 6 PHE B 146 PRO B 147 0 -24.89 CISPEP 7 GLU B 148 PRO B 149 0 -0.57 CRYST1 89.354 89.354 211.301 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011191 0.006461 0.000000 0.00000 SCALE2 0.000000 0.012923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004733 0.00000