HEADER TRANSCRIPTION 12-JUN-15 5C0M TITLE CRYSTAL STRUCTURE OF SGF29 TANDEM TUDOR DOMAIN IN COMPLEX WITH A CARBA TITLE 2 CONTAINING PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAGA-ASSOCIATED FACTOR 29 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TANDEM TUDOR DOMAIN (UNP RESIDUES 115-293); COMPND 5 SYNONYM: SGF29, COILED-COIL DOMAIN-CONTAINING PROTEIN 101; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CARBA-CONTAINING PEPTIDE; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCDC101, SGF29; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS SGF29, TANDEM TUDOR DOMAIN, CARBA CONTAINING PEPTIDE, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,C.XU,W.TEMPEL,T.CEROVINA,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 15-NOV-23 5C0M 1 REMARK REVDAT 3 27-SEP-23 5C0M 1 REMARK REVDAT 2 16-MAR-16 5C0M 1 JRNL REVDAT 1 01-JUL-15 5C0M 0 JRNL AUTH J.J.KAMPS,J.HUANG,J.POATER,C.XU,B.J.PIETERS,A.DONG,J.MIN, JRNL AUTH 2 W.SHERMAN,T.BEUMING,F.MATTHIAS BICKELHAUPT,H.LI,J.MECINOVIC JRNL TITL CHEMICAL BASIS FOR THE RECOGNITION OF TRIMETHYLLYSINE BY JRNL TITL 2 EPIGENETIC READER PROTEINS. JRNL REF NAT COMMUN V. 6 8911 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26578293 JRNL DOI 10.1038/NCOMMS9911 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 44342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1269 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3100 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2811 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 375 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -1.08000 REMARK 3 B33 (A**2) : 1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.431 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3055 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2892 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4194 ; 1.384 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6687 ; 0.916 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 7.550 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;29.290 ;23.551 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;13.428 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.339 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 453 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3488 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 680 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1499 ; 0.975 ; 1.608 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1497 ; 0.974 ; 1.607 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1885 ; 1.642 ; 2.402 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5C0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45670 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 37.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.77500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3ME9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1 M AMMONIUM SULFATE, REMARK 280 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.05450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.60850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.59650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.60850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.05450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.59650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 288 REMARK 465 GLU A 289 REMARK 465 PRO A 290 REMARK 465 LYS A 291 REMARK 465 LYS A 292 REMARK 465 LYS A 293 REMARK 465 GLY B 114 REMARK 465 ARG B 115 REMARK 465 LYS B 292 REMARK 465 LYS B 293 REMARK 465 THR C 6 REMARK 465 ALA C 7 REMARK 465 ARG C 8 REMARK 465 LYS C 9 REMARK 465 SER C 10 REMARK 465 THR D 6 REMARK 465 ALA D 7 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 125 CD OE1 NE2 REMARK 470 LYS A 167 CE NZ REMARK 470 GLU A 197 CD OE1 OE2 REMARK 470 LYS A 230 CE NZ REMARK 470 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 167 NZ REMARK 470 GLU B 197 CD OE1 OE2 REMARK 470 GLU B 198 CG CD OE1 OE2 REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 255 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 255 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 231 -0.32 73.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 190 GLU B 191 149.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 585 DISTANCE = 5.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 DBREF 5C0M A 115 293 UNP Q96ES7 SGF29_HUMAN 115 293 DBREF 5C0M B 115 293 UNP Q96ES7 SGF29_HUMAN 115 293 DBREF 5C0M C 1 10 PDB 5C0M 5C0M 1 10 DBREF 5C0M D 1 10 PDB 5C0M 5C0M 1 10 SEQADV 5C0M GLY A 114 UNP Q96ES7 EXPRESSION TAG SEQADV 5C0M GLY B 114 UNP Q96ES7 EXPRESSION TAG SEQRES 1 A 180 GLY ARG ARG GLY VAL LEU MET THR LEU LEU GLN GLN SER SEQRES 2 A 180 ALA MET THR LEU PRO LEU TRP ILE GLY LYS PRO GLY ASP SEQRES 3 A 180 LYS PRO PRO PRO LEU CYS GLY ALA ILE PRO ALA SER GLY SEQRES 4 A 180 ASP TYR VAL ALA ARG PRO GLY ASP LYS VAL ALA ALA ARG SEQRES 5 A 180 VAL LYS ALA VAL ASP GLY ASP GLU GLN TRP ILE LEU ALA SEQRES 6 A 180 GLU VAL VAL SER TYR SER HIS ALA THR ASN LYS TYR GLU SEQRES 7 A 180 VAL ASP ASP ILE ASP GLU GLU GLY LYS GLU ARG HIS THR SEQRES 8 A 180 LEU SER ARG ARG ARG VAL ILE PRO LEU PRO GLN TRP LYS SEQRES 9 A 180 ALA ASN PRO GLU THR ASP PRO GLU ALA LEU PHE GLN LYS SEQRES 10 A 180 GLU GLN LEU VAL LEU ALA LEU TYR PRO GLN THR THR CYS SEQRES 11 A 180 PHE TYR ARG ALA LEU ILE HIS ALA PRO PRO GLN ARG PRO SEQRES 12 A 180 GLN ASP ASP TYR SER VAL LEU PHE GLU ASP THR SER TYR SEQRES 13 A 180 ALA ASP GLY TYR SER PRO PRO LEU ASN VAL ALA GLN ARG SEQRES 14 A 180 TYR VAL VAL ALA CYS LYS GLU PRO LYS LYS LYS SEQRES 1 B 180 GLY ARG ARG GLY VAL LEU MET THR LEU LEU GLN GLN SER SEQRES 2 B 180 ALA MET THR LEU PRO LEU TRP ILE GLY LYS PRO GLY ASP SEQRES 3 B 180 LYS PRO PRO PRO LEU CYS GLY ALA ILE PRO ALA SER GLY SEQRES 4 B 180 ASP TYR VAL ALA ARG PRO GLY ASP LYS VAL ALA ALA ARG SEQRES 5 B 180 VAL LYS ALA VAL ASP GLY ASP GLU GLN TRP ILE LEU ALA SEQRES 6 B 180 GLU VAL VAL SER TYR SER HIS ALA THR ASN LYS TYR GLU SEQRES 7 B 180 VAL ASP ASP ILE ASP GLU GLU GLY LYS GLU ARG HIS THR SEQRES 8 B 180 LEU SER ARG ARG ARG VAL ILE PRO LEU PRO GLN TRP LYS SEQRES 9 B 180 ALA ASN PRO GLU THR ASP PRO GLU ALA LEU PHE GLN LYS SEQRES 10 B 180 GLU GLN LEU VAL LEU ALA LEU TYR PRO GLN THR THR CYS SEQRES 11 B 180 PHE TYR ARG ALA LEU ILE HIS ALA PRO PRO GLN ARG PRO SEQRES 12 B 180 GLN ASP ASP TYR SER VAL LEU PHE GLU ASP THR SER TYR SEQRES 13 B 180 ALA ASP GLY TYR SER PRO PRO LEU ASN VAL ALA GLN ARG SEQRES 14 B 180 TYR VAL VAL ALA CYS LYS GLU PRO LYS LYS LYS SEQRES 1 C 10 ALA ARG THR 4WQ GLN THR ALA ARG LYS SER SEQRES 1 D 10 ALA ARG THR 4WQ GLN THR ALA ARG LYS SER HET 4WQ C 4 12 HET 4WQ D 4 12 HET SO4 A 301 5 HET UNX A 302 1 HET UNX A 303 1 HET UNX A 304 1 HET UNX A 305 1 HET SO4 B 301 5 HET GOL B 302 6 HET UNX B 303 1 HET UNX B 304 1 HET UNX B 305 1 HETNAM 4WQ (2S)-2-AMINO-7,7-DIMETHYLOCTANOIC ACID HETNAM SO4 SULFATE ION HETNAM UNX UNKNOWN ATOM OR ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 4WQ 2(C10 H21 N O2) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 UNX 7(X) FORMUL 11 GOL C3 H8 O3 FORMUL 15 HOH *375(H2 O) HELIX 1 AA1 GLY A 114 LEU A 130 1 17 HELIX 2 AA2 ASP A 223 LEU A 227 5 5 HELIX 3 AA3 ALA A 280 ARG A 282 5 3 HELIX 4 AA4 GLY B 117 LEU B 130 1 14 HELIX 5 AA5 ASP B 223 LEU B 227 5 5 HELIX 6 AA6 ALA B 280 ARG B 282 5 3 SHEET 1 AA1 6 HIS A 203 SER A 206 0 SHEET 2 AA1 6 LYS A 189 ASP A 194 -1 N TYR A 190 O LEU A 205 SHEET 3 AA1 6 GLU A 173 SER A 184 -1 N VAL A 181 O GLU A 191 SHEET 4 AA1 6 CYS A 243 ALA A 251 -1 O PHE A 244 N TRP A 175 SHEET 5 AA1 6 TYR A 260 PHE A 264 -1 O SER A 261 N HIS A 250 SHEET 6 AA1 6 LEU A 277 VAL A 279 -1 O VAL A 279 N TYR A 260 SHEET 1 AA2 6 VAL A 210 PRO A 212 0 SHEET 2 AA2 6 LYS A 161 LYS A 167 -1 N ALA A 163 O ILE A 211 SHEET 3 AA2 6 GLU A 173 SER A 184 -1 O ILE A 176 N ALA A 164 SHEET 4 AA2 6 CYS A 243 ALA A 251 -1 O PHE A 244 N TRP A 175 SHEET 5 AA2 6 LEU A 233 LEU A 237 -1 N VAL A 234 O ALA A 247 SHEET 6 AA2 6 VAL A 284 ALA A 286 -1 O VAL A 285 N LEU A 235 SHEET 1 AA3 6 ARG B 202 SER B 206 0 SHEET 2 AA3 6 LYS B 189 ASP B 194 -1 N TYR B 190 O LEU B 205 SHEET 3 AA3 6 GLU B 173 SER B 184 -1 N VAL B 181 O GLU B 191 SHEET 4 AA3 6 CYS B 243 ALA B 251 -1 O PHE B 244 N TRP B 175 SHEET 5 AA3 6 TYR B 260 PHE B 264 -1 O LEU B 263 N LEU B 248 SHEET 6 AA3 6 LEU B 277 VAL B 279 -1 O LEU B 277 N VAL B 262 SHEET 1 AA4 6 VAL B 210 PRO B 212 0 SHEET 2 AA4 6 LYS B 161 LYS B 167 -1 N ALA B 163 O ILE B 211 SHEET 3 AA4 6 GLU B 173 SER B 184 -1 O ILE B 176 N ALA B 164 SHEET 4 AA4 6 CYS B 243 ALA B 251 -1 O PHE B 244 N TRP B 175 SHEET 5 AA4 6 LEU B 233 LEU B 237 -1 N VAL B 234 O ALA B 247 SHEET 6 AA4 6 VAL B 284 ALA B 286 -1 O VAL B 285 N LEU B 235 LINK C THR C 3 N 4WQ C 4 1555 1555 1.34 LINK C 4WQ C 4 N GLN C 5 1555 1555 1.34 LINK C THR D 3 N 4WQ D 4 1555 1555 1.34 LINK C 4WQ D 4 N GLN D 5 1555 1555 1.32 SITE 1 AC1 4 SER A 206 ARG A 208 ARG A 209 HOH A 430 SITE 1 AC2 4 SER B 206 ARG B 208 ARG B 209 HOH B 512 SITE 1 AC3 9 GLN B 124 LEU B 237 TYR B 238 GLN B 240 SITE 2 AC3 9 THR B 241 HOH B 418 HOH B 432 HOH B 443 SITE 3 AC3 9 HOH B 527 CRYST1 50.109 65.193 105.217 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019956 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015339 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009504 0.00000