HEADER LYASE,METAL BINDING PROTEIN 12-JUN-15 5C0T TITLE CRYSTAL STRUCTURE OF THE MERCURY-BOUND FORM OF MERB MUTANT D99S COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKYLMERCURY LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ORGANOMERCURIAL LYASE; COMPND 5 EC: 4.99.1.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MERB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BACTERIAL PROTEINS, CYSTEINE, ESCHERICHIA COLI, LYASES, MERCURY, KEYWDS 2 MUTATION, LYASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.M.WAHBA,L.LECOQ,M.STEVENSON,A.MANSOUR,L.CAPPADOCIA,J.LAFRANCE- AUTHOR 2 VANASSE,K.J.WILKINSON,J.SYGUSCH,D.E.WILCOX,J.G.OMICHINSKI REVDAT 7 27-SEP-23 5C0T 1 LINK REVDAT 6 27-NOV-19 5C0T 1 REMARK REVDAT 5 27-SEP-17 5C0T 1 JRNL REMARK REVDAT 4 02-MAR-16 5C0T 1 JRNL REVDAT 3 24-FEB-16 5C0T 1 JRNL REVDAT 2 10-FEB-16 5C0T 1 JRNL REVDAT 1 03-FEB-16 5C0T 0 JRNL AUTH H.M.WAHBA,L.LECOQ,M.STEVENSON,A.MANSOUR,L.CAPPADOCIA, JRNL AUTH 2 J.LAFRANCE-VANASSE,K.J.WILKINSON,J.SYGUSCH,D.E.WILCOX, JRNL AUTH 3 J.G.OMICHINSKI JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A JRNL TITL 2 COPPER-BINDING MUTANT OF THE ORGANOMERCURIAL LYASE MERB: JRNL TITL 3 INSIGHT INTO THE KEY ROLE OF THE ACTIVE SITE ASPARTIC ACID JRNL TITL 4 IN HG-CARBON BOND CLEAVAGE AND METAL BINDING SPECIFICITY. JRNL REF BIOCHEMISTRY V. 55 1070 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 26820485 JRNL DOI 10.1021/ACS.BIOCHEM.5B01298 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 47312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.210 REMARK 3 FREE R VALUE TEST SET COUNT : 3882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2144 - 5.9370 0.99 1570 140 0.1281 0.1421 REMARK 3 2 5.9370 - 4.7141 1.00 1551 140 0.1280 0.1381 REMARK 3 3 4.7141 - 4.1187 0.97 1555 141 0.1188 0.1719 REMARK 3 4 4.1187 - 3.7423 0.99 1581 138 0.1257 0.1725 REMARK 3 5 3.7423 - 3.4742 0.99 1531 139 0.1476 0.1968 REMARK 3 6 3.4742 - 3.2695 0.99 1604 144 0.1462 0.2071 REMARK 3 7 3.2695 - 3.1058 0.99 1567 140 0.1598 0.2097 REMARK 3 8 3.1058 - 2.9706 0.99 1559 136 0.1605 0.1753 REMARK 3 9 2.9706 - 2.8563 0.99 1580 138 0.1683 0.2314 REMARK 3 10 2.8563 - 2.7577 0.99 1565 144 0.1806 0.2464 REMARK 3 11 2.7577 - 2.6715 0.99 1560 141 0.1786 0.2473 REMARK 3 12 2.6715 - 2.5951 0.99 1580 142 0.1776 0.2356 REMARK 3 13 2.5951 - 2.5268 0.99 1522 136 0.1771 0.2515 REMARK 3 14 2.5268 - 2.4652 0.99 1599 143 0.1773 0.2221 REMARK 3 15 2.4652 - 2.4091 0.99 1564 141 0.1823 0.2622 REMARK 3 16 2.4091 - 2.3579 0.98 1532 139 0.1793 0.2229 REMARK 3 17 2.3579 - 2.3107 0.99 1586 141 0.1957 0.3005 REMARK 3 18 2.3107 - 2.2671 0.99 1530 138 0.1919 0.2345 REMARK 3 19 2.2671 - 2.2266 0.97 1553 139 0.1905 0.2345 REMARK 3 20 2.2266 - 2.1889 0.98 1592 142 0.2034 0.2711 REMARK 3 21 2.1889 - 2.1536 0.97 1495 132 0.2139 0.2911 REMARK 3 22 2.1536 - 2.1204 0.98 1559 141 0.2275 0.2574 REMARK 3 23 2.1204 - 2.0893 0.97 1554 131 0.2303 0.2369 REMARK 3 24 2.0893 - 2.0598 0.98 1499 137 0.2281 0.2860 REMARK 3 25 2.0598 - 2.0320 0.96 1584 139 0.2366 0.2815 REMARK 3 26 2.0320 - 2.0056 0.97 1481 135 0.2497 0.3274 REMARK 3 27 2.0056 - 1.9805 0.95 1487 131 0.2813 0.3039 REMARK 3 28 1.9805 - 1.9567 0.91 1490 134 0.3036 0.3223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3271 REMARK 3 ANGLE : 1.111 4454 REMARK 3 CHIRALITY : 0.040 527 REMARK 3 PLANARITY : 0.005 572 REMARK 3 DIHEDRAL : 12.753 1166 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8263 2.1069 41.2478 REMARK 3 T TENSOR REMARK 3 T11: 0.2708 T22: 0.3346 REMARK 3 T33: 0.3466 T12: 0.0260 REMARK 3 T13: 0.0680 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.0365 L22: -0.0041 REMARK 3 L33: 0.1262 L12: 0.0064 REMARK 3 L13: 0.0021 L23: 0.0097 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: -0.1049 S13: -0.3246 REMARK 3 S21: -0.2538 S22: -0.0050 S23: -0.0844 REMARK 3 S31: -0.3925 S32: -0.1578 S33: -0.0016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9181 -16.5012 37.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.4542 T22: 0.1836 REMARK 3 T33: 0.2530 T12: 0.0223 REMARK 3 T13: -0.0139 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.0829 L22: 0.1891 REMARK 3 L33: 0.4933 L12: -0.0312 REMARK 3 L13: 0.1302 L23: 0.0107 REMARK 3 S TENSOR REMARK 3 S11: -0.1271 S12: -0.0701 S13: -0.1053 REMARK 3 S21: 0.5604 S22: 0.0752 S23: -0.0281 REMARK 3 S31: 0.2152 S32: 0.1367 S33: -0.0119 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4040 -19.0210 30.5894 REMARK 3 T TENSOR REMARK 3 T11: 0.3268 T22: -0.0175 REMARK 3 T33: 0.4025 T12: -0.1006 REMARK 3 T13: 0.1574 T23: -0.3259 REMARK 3 L TENSOR REMARK 3 L11: 1.0505 L22: 0.2642 REMARK 3 L33: 0.8293 L12: -0.2928 REMARK 3 L13: 0.6649 L23: -0.4103 REMARK 3 S TENSOR REMARK 3 S11: -0.0994 S12: 0.7255 S13: 0.7293 REMARK 3 S21: 0.3182 S22: -0.4737 S23: 0.5813 REMARK 3 S31: 0.6434 S32: -0.1906 S33: -0.3011 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4375 -11.5307 27.4092 REMARK 3 T TENSOR REMARK 3 T11: 0.2678 T22: 0.2274 REMARK 3 T33: 0.2716 T12: 0.0274 REMARK 3 T13: 0.0071 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: -0.0013 L22: 0.0532 REMARK 3 L33: 0.0082 L12: 0.0378 REMARK 3 L13: -0.0003 L23: 0.0399 REMARK 3 S TENSOR REMARK 3 S11: 0.1301 S12: 0.0870 S13: -0.1480 REMARK 3 S21: 0.2167 S22: -0.2331 S23: 0.3970 REMARK 3 S31: -0.1312 S32: 0.1116 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2189 3.1185 30.4742 REMARK 3 T TENSOR REMARK 3 T11: 0.2326 T22: 0.2181 REMARK 3 T33: 0.1855 T12: 0.0255 REMARK 3 T13: -0.0156 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0477 L22: 0.6294 REMARK 3 L33: 0.6295 L12: -0.1911 REMARK 3 L13: -0.1189 L23: 0.0698 REMARK 3 S TENSOR REMARK 3 S11: 0.0614 S12: 0.1258 S13: 0.0618 REMARK 3 S21: -0.0698 S22: -0.0575 S23: -0.1030 REMARK 3 S31: 0.1326 S32: 0.2399 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3228 5.4438 33.9097 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.2120 REMARK 3 T33: 0.2565 T12: 0.0048 REMARK 3 T13: 0.0010 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.9266 L22: 0.3687 REMARK 3 L33: 0.6364 L12: -0.3241 REMARK 3 L13: -0.0383 L23: -0.0993 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.0003 S13: -0.1105 REMARK 3 S21: 0.0971 S22: 0.0153 S23: 0.2230 REMARK 3 S31: -0.0147 S32: -0.1935 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9688 1.2905 0.3363 REMARK 3 T TENSOR REMARK 3 T11: 0.3640 T22: 0.4415 REMARK 3 T33: 0.3713 T12: 0.0570 REMARK 3 T13: 0.0366 T23: 0.1597 REMARK 3 L TENSOR REMARK 3 L11: 0.0690 L22: 0.0490 REMARK 3 L33: 0.1094 L12: 0.0663 REMARK 3 L13: -0.0412 L23: 0.0358 REMARK 3 S TENSOR REMARK 3 S11: 0.0982 S12: -0.6046 S13: -0.1403 REMARK 3 S21: -0.0817 S22: 0.0388 S23: 0.2037 REMARK 3 S31: -0.1644 S32: -0.0894 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9220 -21.0024 7.2563 REMARK 3 T TENSOR REMARK 3 T11: 0.2546 T22: 0.2510 REMARK 3 T33: 0.2607 T12: 0.0760 REMARK 3 T13: -0.0145 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.1731 L22: 0.2111 REMARK 3 L33: 0.7627 L12: -0.0899 REMARK 3 L13: 0.3583 L23: -0.0622 REMARK 3 S TENSOR REMARK 3 S11: 0.2673 S12: 0.1978 S13: 0.0251 REMARK 3 S21: -0.3816 S22: -0.2121 S23: 0.1069 REMARK 3 S31: 0.2235 S32: -0.0565 S33: 0.0003 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4961 -9.8419 13.3818 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: 0.2796 REMARK 3 T33: 0.1957 T12: 0.0350 REMARK 3 T13: 0.0228 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.4434 L22: 1.7073 REMARK 3 L33: 0.1771 L12: -0.3264 REMARK 3 L13: 0.0354 L23: -0.4513 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: -0.0023 S13: 0.0143 REMARK 3 S21: -0.0014 S22: 0.0226 S23: -0.0268 REMARK 3 S31: 0.0404 S32: -0.1003 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 142 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7866 2.2551 8.1075 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.5556 REMARK 3 T33: 0.5407 T12: 0.0658 REMARK 3 T13: 0.2342 T23: 0.3730 REMARK 3 L TENSOR REMARK 3 L11: 0.0928 L22: 0.4354 REMARK 3 L33: 0.5090 L12: 0.1756 REMARK 3 L13: 0.1494 L23: 0.3937 REMARK 3 S TENSOR REMARK 3 S11: -0.6716 S12: -0.1695 S13: -0.2669 REMARK 3 S21: -0.3600 S22: -0.3746 S23: -0.6746 REMARK 3 S31: -0.0224 S32: 0.5959 S33: -0.4352 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 154 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2944 2.6914 7.5790 REMARK 3 T TENSOR REMARK 3 T11: 0.2407 T22: 0.3626 REMARK 3 T33: 0.2425 T12: 0.0336 REMARK 3 T13: -0.0296 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.3564 L22: 0.4999 REMARK 3 L33: 0.6291 L12: 0.2222 REMARK 3 L13: 0.1041 L23: -0.4938 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.0370 S13: 0.2362 REMARK 3 S21: -0.1525 S22: -0.0268 S23: -0.0844 REMARK 3 S31: -0.1117 S32: 0.2213 S33: -0.0046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000206338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24414 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.77900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3F0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23 % POLYETHYLENE GLYCOL 2000 MME, 0.2 REMARK 280 M SODIUM ACETATE PH 5.5, 0.2 M POTASSIUM BROMIDE. BEFORE FLASH REMARK 280 FREEZING, THE SAME PRECIPITANT WAS USED EXCEPT 25 % POLYETHYLENE REMARK 280 GLYCOL 2000 MME WAS USED AS A CRYO-PROTECTANT., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.55650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 209 REMARK 465 ARG A 210 REMARK 465 THR A 211 REMARK 465 PRO A 212 REMARK 465 SER B 209 REMARK 465 ARG B 210 REMARK 465 THR B 211 REMARK 465 PRO B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 61 OD2 ASP B 153 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 57.03 -90.78 REMARK 500 TYR A 74 82.06 -165.87 REMARK 500 ASP A 88 -121.86 55.47 REMARK 500 SER A 115 -164.79 -161.37 REMARK 500 PHE A 158 -63.16 -122.25 REMARK 500 ASN B 15 35.54 -86.35 REMARK 500 ALA B 60 76.28 -104.34 REMARK 500 TYR B 74 81.34 -165.25 REMARK 500 SER B 115 -163.40 -166.66 REMARK 500 PHE B 158 -67.55 -124.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 301 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 96 SG REMARK 620 2 SER A 99 OG 60.4 REMARK 620 3 CYS A 159 SG 108.7 117.8 REMARK 620 4 HOH A 523 O 88.0 76.5 161.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 301 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 96 SG REMARK 620 2 SER B 99 OG 60.1 REMARK 620 3 CYS B 159 SG 108.8 116.3 REMARK 620 4 HOH B 498 O 93.8 80.3 156.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F0P RELATED DB: PDB REMARK 900 3F0P IS MERB WILD TYPE. REMARK 900 RELATED ID: 5C0U RELATED DB: PDB REMARK 900 RELATED ID: 5C17 RELATED DB: PDB REMARK 900 RELATED ID: 5DSF RELATED DB: PDB DBREF 5C0T A 1 212 UNP P77072 MERB_ECOLX 1 212 DBREF 5C0T B 1 212 UNP P77072 MERB_ECOLX 1 212 SEQADV 5C0T SER A 99 UNP P77072 ASP 99 ENGINEERED MUTATION SEQADV 5C0T SER B 99 UNP P77072 ASP 99 ENGINEERED MUTATION SEQRES 1 A 212 MET LYS LEU ALA PRO TYR ILE LEU GLU LEU LEU THR SER SEQRES 2 A 212 VAL ASN ARG THR ASN GLY THR ALA ASP LEU LEU VAL PRO SEQRES 3 A 212 LEU LEU ARG GLU LEU ALA LYS GLY ARG PRO VAL SER ARG SEQRES 4 A 212 THR THR LEU ALA GLY ILE LEU ASP TRP PRO ALA GLU ARG SEQRES 5 A 212 VAL ALA ALA VAL LEU GLU GLN ALA THR SER THR GLU TYR SEQRES 6 A 212 ASP LYS ASP GLY ASN ILE ILE GLY TYR GLY LEU THR LEU SEQRES 7 A 212 ARG GLU THR SER TYR VAL PHE GLU ILE ASP ASP ARG ARG SEQRES 8 A 212 LEU TYR ALA TRP CYS ALA LEU SER THR LEU ILE PHE PRO SEQRES 9 A 212 ALA LEU ILE GLY ARG THR ALA ARG VAL SER SER HIS CYS SEQRES 10 A 212 ALA ALA THR GLY ALA PRO VAL SER LEU THR VAL SER PRO SEQRES 11 A 212 SER GLU ILE GLN ALA VAL GLU PRO ALA GLY MET ALA VAL SEQRES 12 A 212 SER LEU VAL LEU PRO GLN GLU ALA ALA ASP VAL ARG GLN SEQRES 13 A 212 SER PHE CYS CYS HIS VAL HIS PHE PHE ALA SER VAL PRO SEQRES 14 A 212 THR ALA GLU ASP TRP ALA SER LYS HIS GLN GLY LEU GLU SEQRES 15 A 212 GLY LEU ALA ILE VAL SER VAL HIS GLU ALA PHE GLY LEU SEQRES 16 A 212 GLY GLN GLU PHE ASN ARG HIS LEU LEU GLN THR MET SER SEQRES 17 A 212 SER ARG THR PRO SEQRES 1 B 212 MET LYS LEU ALA PRO TYR ILE LEU GLU LEU LEU THR SER SEQRES 2 B 212 VAL ASN ARG THR ASN GLY THR ALA ASP LEU LEU VAL PRO SEQRES 3 B 212 LEU LEU ARG GLU LEU ALA LYS GLY ARG PRO VAL SER ARG SEQRES 4 B 212 THR THR LEU ALA GLY ILE LEU ASP TRP PRO ALA GLU ARG SEQRES 5 B 212 VAL ALA ALA VAL LEU GLU GLN ALA THR SER THR GLU TYR SEQRES 6 B 212 ASP LYS ASP GLY ASN ILE ILE GLY TYR GLY LEU THR LEU SEQRES 7 B 212 ARG GLU THR SER TYR VAL PHE GLU ILE ASP ASP ARG ARG SEQRES 8 B 212 LEU TYR ALA TRP CYS ALA LEU SER THR LEU ILE PHE PRO SEQRES 9 B 212 ALA LEU ILE GLY ARG THR ALA ARG VAL SER SER HIS CYS SEQRES 10 B 212 ALA ALA THR GLY ALA PRO VAL SER LEU THR VAL SER PRO SEQRES 11 B 212 SER GLU ILE GLN ALA VAL GLU PRO ALA GLY MET ALA VAL SEQRES 12 B 212 SER LEU VAL LEU PRO GLN GLU ALA ALA ASP VAL ARG GLN SEQRES 13 B 212 SER PHE CYS CYS HIS VAL HIS PHE PHE ALA SER VAL PRO SEQRES 14 B 212 THR ALA GLU ASP TRP ALA SER LYS HIS GLN GLY LEU GLU SEQRES 15 B 212 GLY LEU ALA ILE VAL SER VAL HIS GLU ALA PHE GLY LEU SEQRES 16 B 212 GLY GLN GLU PHE ASN ARG HIS LEU LEU GLN THR MET SER SEQRES 17 B 212 SER ARG THR PRO HET HG A 301 1 HET BR A 302 1 HET HG B 301 1 HETNAM HG MERCURY (II) ION HETNAM BR BROMIDE ION FORMUL 3 HG 2(HG 2+) FORMUL 4 BR BR 1- FORMUL 6 HOH *252(H2 O) HELIX 1 AA1 LEU A 3 ASN A 15 1 13 HELIX 2 AA2 GLY A 19 ALA A 32 1 14 HELIX 3 AA3 SER A 38 ASP A 47 1 10 HELIX 4 AA4 PRO A 49 ALA A 60 1 12 HELIX 5 AA5 CYS A 96 GLY A 108 1 13 HELIX 6 AA6 ASP A 153 PHE A 158 1 6 HELIX 7 AA7 CYS A 159 VAL A 162 5 4 HELIX 8 AA8 SER A 167 SER A 176 1 10 HELIX 9 AA9 VAL A 189 GLN A 205 1 17 HELIX 10 AB1 LEU B 3 ASN B 15 1 13 HELIX 11 AB2 GLY B 19 ALA B 32 1 14 HELIX 12 AB3 SER B 38 ASP B 47 1 10 HELIX 13 AB4 PRO B 49 GLN B 59 1 11 HELIX 14 AB5 CYS B 96 GLY B 108 1 13 HELIX 15 AB6 ASP B 153 PHE B 158 1 6 HELIX 16 AB7 CYS B 159 VAL B 162 5 4 HELIX 17 AB8 SER B 167 SER B 176 1 10 HELIX 18 AB9 VAL B 189 THR B 206 1 18 SHEET 1 AA1 2 GLU A 64 TYR A 65 0 SHEET 2 AA1 2 ILE A 71 GLY A 73 -1 O ILE A 72 N GLU A 64 SHEET 1 AA2 6 LEU A 76 THR A 77 0 SHEET 2 AA2 6 ARG A 90 ALA A 94 -1 O TYR A 93 N THR A 77 SHEET 3 AA2 6 TYR A 83 ILE A 87 -1 N PHE A 85 O LEU A 92 SHEET 4 AA2 6 ALA A 111 HIS A 116 -1 O ARG A 112 N GLU A 86 SHEET 5 AA2 6 PRO A 123 VAL A 128 -1 O VAL A 128 N ALA A 111 SHEET 6 AA2 6 ILE A 133 GLU A 137 -1 O GLU A 137 N SER A 125 SHEET 1 AA3 3 PHE A 164 PHE A 165 0 SHEET 2 AA3 3 ALA A 142 LEU A 145 -1 N ALA A 142 O PHE A 165 SHEET 3 AA3 3 ALA A 185 SER A 188 -1 O VAL A 187 N VAL A 143 SHEET 1 AA4 2 GLU B 64 TYR B 65 0 SHEET 2 AA4 2 ILE B 71 GLY B 73 -1 O ILE B 72 N GLU B 64 SHEET 1 AA5 6 LEU B 76 THR B 77 0 SHEET 2 AA5 6 ARG B 90 ALA B 94 -1 O TYR B 93 N THR B 77 SHEET 3 AA5 6 TYR B 83 ILE B 87 -1 N PHE B 85 O LEU B 92 SHEET 4 AA5 6 ALA B 111 HIS B 116 -1 O ARG B 112 N GLU B 86 SHEET 5 AA5 6 PRO B 123 VAL B 128 -1 O LEU B 126 N VAL B 113 SHEET 6 AA5 6 ILE B 133 GLU B 137 -1 O GLU B 137 N SER B 125 SHEET 1 AA6 3 PHE B 164 PHE B 165 0 SHEET 2 AA6 3 ALA B 142 LEU B 145 -1 N ALA B 142 O PHE B 165 SHEET 3 AA6 3 ALA B 185 SER B 188 -1 O ALA B 185 N LEU B 145 LINK SG CYS A 96 HG HG A 301 1555 1555 2.47 LINK OG SER A 99 HG HG A 301 1555 1555 3.09 LINK SG CYS A 159 HG HG A 301 1555 1555 2.39 LINK HG HG A 301 O HOH A 523 1555 1555 2.65 LINK SG CYS B 96 HG HG B 301 1555 1555 2.46 LINK OG SER B 99 HG HG B 301 1555 1555 3.09 LINK SG CYS B 159 HG HG B 301 1555 1555 2.40 LINK HG HG B 301 O HOH B 498 1555 1555 2.65 CISPEP 1 GLU A 137 PRO A 138 0 -3.18 CISPEP 2 GLU B 137 PRO B 138 0 -4.47 SITE 1 AC1 5 CYS A 96 SER A 99 PHE A 158 CYS A 159 SITE 2 AC1 5 HOH A 523 SITE 1 AC2 2 LYS A 2 PRO A 5 SITE 1 AC3 4 CYS B 96 SER B 99 CYS B 159 HOH B 498 CRYST1 38.061 89.113 51.824 90.00 100.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026274 0.000000 0.005008 0.00000 SCALE2 0.000000 0.011222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019643 0.00000