HEADER METAL BINDING PROTEIN 12-JUN-15 5C12 TITLE NUCLEASE DOMAIN OF THE LARGE TERMINASE SUBUNIT GP2 OF BACTERIAL VIRUS TITLE 2 SF6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENE 2 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEASE DOMAIN (UNP RESIDUES 213-470); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE SF6; SOURCE 3 ORGANISM_COMMON: SHIGELLA FLEXNERI BACTERIOPHAGE VI; SOURCE 4 ORGANISM_TAXID: 10761; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS NUCLEASE DOMAIN, METAL BINDING SITE, K428A MUTANT, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHAO,L.TANG REVDAT 5 06-MAR-24 5C12 1 REMARK REVDAT 4 25-DEC-19 5C12 1 REMARK REVDAT 3 06-SEP-17 5C12 1 JRNL REMARK REVDAT 2 30-DEC-15 5C12 1 JRNL REVDAT 1 21-OCT-15 5C12 0 JRNL AUTH H.ZHAO,Z.LIN,A.Y.LYNN,B.VARNADO,J.A.BEUTLER,R.P.MURELLI, JRNL AUTH 2 S.F.LE GRICE,L.TANG JRNL TITL TWO DISTINCT MODES OF METAL ION BINDING IN THE NUCLEASE JRNL TITL 2 ACTIVE SITE OF A VIRAL DNA-PACKAGING TERMINASE: INSIGHT INTO JRNL TITL 3 THE TWO-METAL-ION CATALYTIC MECHANISM. JRNL REF NUCLEIC ACIDS RES. V. 43 11003 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26450964 JRNL DOI 10.1093/NAR/GKV1018 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 52133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.9727 - 4.0356 0.98 2705 142 0.1601 0.1500 REMARK 3 2 4.0356 - 3.2082 0.97 2641 139 0.1396 0.1875 REMARK 3 3 3.2082 - 2.8041 0.98 2663 139 0.1655 0.1762 REMARK 3 4 2.8041 - 2.5484 0.98 2641 140 0.1511 0.1687 REMARK 3 5 2.5484 - 2.3661 0.99 2669 140 0.1479 0.1829 REMARK 3 6 2.3661 - 2.2269 0.99 2648 139 0.1422 0.1696 REMARK 3 7 2.2269 - 2.1155 0.99 2655 141 0.1409 0.1614 REMARK 3 8 2.1155 - 2.0235 0.99 2684 141 0.1412 0.1750 REMARK 3 9 2.0235 - 1.9457 1.00 2655 139 0.1489 0.2024 REMARK 3 10 1.9457 - 1.8786 0.99 2688 142 0.1587 0.2040 REMARK 3 11 1.8786 - 1.8199 0.99 2633 139 0.1630 0.1769 REMARK 3 12 1.8199 - 1.7679 0.99 2652 139 0.1740 0.2281 REMARK 3 13 1.7679 - 1.7214 0.99 2629 138 0.1817 0.2270 REMARK 3 14 1.7214 - 1.6794 0.99 2651 139 0.1888 0.2133 REMARK 3 15 1.6794 - 1.6413 1.00 2679 142 0.1888 0.2236 REMARK 3 16 1.6413 - 1.6064 0.99 2621 138 0.1880 0.2154 REMARK 3 17 1.6064 - 1.5743 0.99 2666 140 0.2085 0.2298 REMARK 3 18 1.5743 - 1.5446 0.99 2605 138 0.2239 0.2935 REMARK 3 19 1.5446 - 1.5170 0.65 1741 92 0.2554 0.2948 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1830 REMARK 3 ANGLE : 1.208 2466 REMARK 3 CHIRALITY : 0.070 262 REMARK 3 PLANARITY : 0.006 321 REMARK 3 DIHEDRAL : 11.982 680 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 213:454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7962 39.6403 24.4381 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.0865 REMARK 3 T33: 0.0989 T12: -0.0142 REMARK 3 T13: 0.0026 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.5442 L22: 1.0567 REMARK 3 L33: 1.8706 L12: -0.2833 REMARK 3 L13: -0.1496 L23: -0.2231 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.0324 S13: 0.1113 REMARK 3 S21: -0.0028 S22: -0.0277 S23: -0.0320 REMARK 3 S31: -0.0425 S32: 0.0932 S33: 0.0277 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03316 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52497 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 29.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 8.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : 2.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: LONG ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, PH7.5, 50MM NACL, 8% REMARK 280 PEG8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.32250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.75950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.32250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.75950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1225 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1230 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 193 REMARK 465 GLY A 194 REMARK 465 SER A 195 REMARK 465 SER A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 SER A 203 REMARK 465 SER A 204 REMARK 465 GLY A 205 REMARK 465 LEU A 206 REMARK 465 VAL A 207 REMARK 465 PRO A 208 REMARK 465 ARG A 209 REMARK 465 GLY A 210 REMARK 465 SER A 211 REMARK 465 HIS A 212 REMARK 465 GLY A 338 REMARK 465 ALA A 339 REMARK 465 TRP A 340 REMARK 465 ALA A 341 REMARK 465 ASP A 342 REMARK 465 GLU A 343 REMARK 465 VAL A 344 REMARK 465 VAL A 345 REMARK 465 GLN A 346 REMARK 465 GLY A 347 REMARK 465 ASP A 348 REMARK 465 ASN A 349 REMARK 465 LEU A 455 REMARK 465 VAL A 456 REMARK 465 ARG A 457 REMARK 465 GLU A 458 REMARK 465 GLU A 459 REMARK 465 THR A 460 REMARK 465 GLU A 461 REMARK 465 ILE A 462 REMARK 465 TYR A 463 REMARK 465 VAL A 464 REMARK 465 PRO A 465 REMARK 465 SER A 466 REMARK 465 SER A 467 REMARK 465 SER A 468 REMARK 465 GLY A 469 REMARK 465 TRP A 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 247 HG1 THR A 248 1.56 REMARK 500 MG MG A 800 O HOH A 910 1.69 REMARK 500 O HOH A 1047 O HOH A 1147 2.01 REMARK 500 O HOH A 1060 O HOH A 1105 2.01 REMARK 500 O HOH A 1089 O HOH A 1156 2.01 REMARK 500 O HOH A 1139 O HOH A 1179 2.02 REMARK 500 O HOH A 1187 O HOH A 1191 2.04 REMARK 500 O HOH A 1094 O HOH A 1204 2.05 REMARK 500 O HOH A 1101 O HOH A 1115 2.10 REMARK 500 O HOH A 1134 O HOH A 1163 2.12 REMARK 500 O HOH A 1152 O HOH A 1167 2.12 REMARK 500 O HOH A 1000 O HOH A 1193 2.13 REMARK 500 OG SER A 246 O THR A 248 2.14 REMARK 500 O HOH A 1038 O HOH A 1171 2.14 REMARK 500 O HOH A 1140 O HOH A 1172 2.15 REMARK 500 O HOH A 1099 O HOH A 1138 2.16 REMARK 500 O HOH A 1003 O HOH A 1114 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 925 O HOH A 1138 4546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 246 161.96 87.44 REMARK 500 THR A 248 152.26 71.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 244 OD2 REMARK 620 2 ASP A 444 OD2 98.6 REMARK 620 3 HOH A 908 O 86.8 94.6 REMARK 620 4 HOH A 910 O 93.5 166.5 92.0 REMARK 620 5 HOH A 995 O 94.4 80.3 174.9 92.9 REMARK 620 6 HOH A1027 O 176.1 84.5 90.5 83.7 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 800 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 296 OD2 REMARK 620 2 HOH A 972 O 72.1 REMARK 620 3 HOH A 995 O 88.7 160.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IDH RELATED DB: PDB REMARK 900 THE FULL LENGTH PROTEIN REMARK 900 RELATED ID: 5C10 RELATED DB: PDB REMARK 900 NATIVE GP2C REMARK 900 RELATED ID: 5C15 RELATED DB: PDB REMARK 900 K428A MUTANT PROTEIN WITH MN2+ REMARK 900 RELATED ID: 5C2D RELATED DB: PDB REMARK 900 K428A MUTANT PROTEIN WITH CA2+ REMARK 900 RELATED ID: 5C2F RELATED DB: PDB REMARK 900 K428A MUTANT PROTEIN WITH MN2+ AND BETA-THUJAPLICINOL DBREF 5C12 A 213 470 UNP Q716H3 Q716H3_BPSFV 213 470 SEQADV 5C12 MET A 193 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 GLY A 194 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 SER A 195 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 SER A 196 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 HIS A 197 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 HIS A 198 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 HIS A 199 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 HIS A 200 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 HIS A 201 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 HIS A 202 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 SER A 203 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 SER A 204 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 GLY A 205 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 LEU A 206 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 VAL A 207 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 PRO A 208 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 ARG A 209 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 GLY A 210 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 SER A 211 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 HIS A 212 UNP Q716H3 EXPRESSION TAG SEQADV 5C12 ALA A 428 UNP Q716H3 LYS 428 ENGINEERED MUTATION SEQRES 1 A 278 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 278 LEU VAL PRO ARG GLY SER HIS MET ALA ILE ILE LYS ARG SEQRES 3 A 278 GLU TRP LEU GLU ALA ALA THR ASP ALA HIS LYS LYS LEU SEQRES 4 A 278 GLY TRP LYS ALA LYS GLY ALA VAL VAL SER ALA HIS ASP SEQRES 5 A 278 PRO SER ASP THR GLY PRO ASP ALA LYS GLY TYR ALA SER SEQRES 6 A 278 ARG HIS GLY SER VAL VAL LYS ARG ILE ALA GLU GLY LEU SEQRES 7 A 278 LEU MET ASP ILE ASN GLU GLY ALA ASP TRP ALA THR SER SEQRES 8 A 278 LEU ALA ILE GLU ASP GLY ALA ASP HIS TYR LEU TRP ASP SEQRES 9 A 278 GLY ASP GLY VAL GLY ALA GLY LEU ARG ARG GLN THR THR SEQRES 10 A 278 GLU ALA PHE SER GLY LYS LYS ILE THR ALA THR MET PHE SEQRES 11 A 278 LYS GLY SER GLU SER PRO PHE ASP GLU ASP ALA PRO TYR SEQRES 12 A 278 GLN ALA GLY ALA TRP ALA ASP GLU VAL VAL GLN GLY ASP SEQRES 13 A 278 ASN VAL ARG THR ILE GLY ASP VAL PHE ARG ASN LYS ARG SEQRES 14 A 278 ALA GLN PHE TYR TYR ALA LEU ALA ASP ARG LEU TYR LEU SEQRES 15 A 278 THR TYR ARG ALA VAL VAL HIS GLY GLU TYR ALA ASP PRO SEQRES 16 A 278 ASP ASP MET LEU SER PHE ASP LYS GLU ALA ILE GLY GLU SEQRES 17 A 278 LYS MET LEU GLU LYS LEU PHE ALA GLU LEU THR GLN ILE SEQRES 18 A 278 GLN ARG LYS PHE ASN ASN ASN GLY LYS LEU GLU LEU MET SEQRES 19 A 278 THR ALA VAL GLU MET LYS GLN LYS LEU GLY ILE PRO SER SEQRES 20 A 278 PRO ASN LEU ALA ASP ALA LEU MET MET CYS MET HIS CYS SEQRES 21 A 278 PRO ALA LEU VAL ARG GLU GLU THR GLU ILE TYR VAL PRO SEQRES 22 A 278 SER SER SER GLY TRP HET MG A 800 1 HET MG A 801 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG 2(MG 2+) FORMUL 4 HOH *330(H2 O) HELIX 1 AA1 LYS A 217 THR A 225 1 9 HELIX 2 AA2 ASP A 226 GLY A 232 1 7 HELIX 3 AA3 ASP A 273 ASP A 288 1 16 HELIX 4 AA4 LEU A 304 PHE A 312 1 9 HELIX 5 AA5 THR A 352 PHE A 357 1 6 HELIX 6 AA6 ASN A 359 GLY A 382 1 24 HELIX 7 AA7 ASP A 386 MET A 390 5 5 HELIX 8 AA8 ASP A 394 GLY A 399 1 6 HELIX 9 AA9 GLY A 399 THR A 411 1 13 HELIX 10 AB1 THR A 427 GLY A 436 1 10 HELIX 11 AB2 PRO A 440 CYS A 449 1 10 SHEET 1 AA1 6 THR A 318 PHE A 322 0 SHEET 2 AA1 6 HIS A 292 ASP A 296 1 N TRP A 295 O PHE A 322 SHEET 3 AA1 6 VAL A 239 ASP A 244 1 N SER A 241 O HIS A 292 SHEET 4 AA1 6 LYS A 253 HIS A 259 -1 O GLY A 254 N ASP A 244 SHEET 5 AA1 6 VAL A 262 GLY A 269 -1 O VAL A 262 N HIS A 259 SHEET 6 AA1 6 SER A 392 PHE A 393 1 O SER A 392 N VAL A 263 LINK OD2 ASP A 244 MG MG A 801 1555 1555 2.03 LINK OD2 ASP A 296 MG MG A 800 1555 1555 2.02 LINK OD2 ASP A 444 MG MG A 801 1555 1555 2.19 LINK MG MG A 800 O HOH A 972 1555 1555 2.85 LINK MG MG A 800 O HOH A 995 1555 1555 1.91 LINK MG MG A 801 O HOH A 908 1555 1555 2.08 LINK MG MG A 801 O HOH A 910 1555 1555 1.90 LINK MG MG A 801 O HOH A 995 1555 1555 2.17 LINK MG MG A 801 O HOH A1027 1555 1555 2.07 SITE 1 AC1 8 ASP A 244 ASP A 247 ASP A 296 MG A 801 SITE 2 AC1 8 HOH A 910 HOH A 972 HOH A 995 HOH A1027 SITE 1 AC2 7 ASP A 244 ASP A 444 MG A 800 HOH A 908 SITE 2 AC2 7 HOH A 910 HOH A 995 HOH A1027 CRYST1 132.645 57.519 46.598 90.00 98.76 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007539 0.000000 0.001162 0.00000 SCALE2 0.000000 0.017386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021713 0.00000