HEADER HYDROLASE 12-JUN-15 5C13 TITLE CRYSTAL STRUCTURE OF TAF3 PHD FINGER BOUND TO HISTONE H3C4ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: PHD FINGER DOMAIN, UNP RESIDUES 853-915; COMPND 5 SYNONYM: 140 KDA TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR,TBP- COMPND 6 ASSOCIATED FACTOR 3,TRANSCRIPTION INITIATION FACTOR TFIID 140 KDA COMPND 7 SUBUNIT,TAFII140; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: H3 PEPTIDE; COMPND 11 CHAIN: P, D, F, H; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TAF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: CHEMICALLY SYNTHESIZED H3 PEPTIDE 1-10 WITH K4CME3 SOURCE 16 MODIFICATION KEYWDS ZINC FINGER PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,J.HUANG REVDAT 3 15-NOV-23 5C13 1 ATOM REVDAT 2 27-SEP-17 5C13 1 REMARK REVDAT 1 25-NOV-15 5C13 0 JRNL AUTH J.HUANG,H.LI JRNL TITL CRYSTAL STRUCTURE OF JARID1A PHD FINGER BOUND TO HISTONE JRNL TITL 2 H3C4ME3 PEPTIDE JRNL REF NAT COMMUN 2015 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 15001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6238 - 3.5921 0.98 2868 170 0.2049 0.2586 REMARK 3 2 3.5921 - 2.8517 0.99 2869 156 0.2195 0.2830 REMARK 3 3 2.8517 - 2.4914 1.00 2829 157 0.2367 0.3021 REMARK 3 4 2.4914 - 2.2637 0.99 2830 157 0.2439 0.2813 REMARK 3 5 2.2637 - 2.1014 0.98 2845 120 0.2448 0.3321 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2184 REMARK 3 ANGLE : 1.557 2984 REMARK 3 CHIRALITY : 0.070 280 REMARK 3 PLANARITY : 0.010 384 REMARK 3 DIHEDRAL : 16.894 796 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C13 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15064 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.03M MAGNESIUM CHLORIDE, 0.03M REMARK 280 CALCIUM CHLORIDE, 0.1M MES, 0.1M IMIDAZOLE, PH6.5, 15% PEGMME REMARK 280 550, 15% PEG 20K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.05250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 854 REMARK 465 SER A 855 REMARK 465 ALA A 915 REMARK 465 ASN A 916 REMARK 465 LYS A 917 REMARK 465 ALA P 7 REMARK 465 ARG P 8 REMARK 465 LYS P 9 REMARK 465 SER P 10 REMARK 465 GLY C 854 REMARK 465 SER C 855 REMARK 465 ALA C 915 REMARK 465 ASN C 916 REMARK 465 LYS C 917 REMARK 465 ALA D 7 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 GLY E 854 REMARK 465 SER E 855 REMARK 465 ALA E 915 REMARK 465 ASN E 916 REMARK 465 LYS E 917 REMARK 465 ALA F 7 REMARK 465 ARG F 8 REMARK 465 LYS F 9 REMARK 465 SER F 10 REMARK 465 GLY G 854 REMARK 465 SER G 855 REMARK 465 ALA G 915 REMARK 465 ASN G 916 REMARK 465 LYS G 917 REMARK 465 ALA H 7 REMARK 465 ARG H 8 REMARK 465 LYS H 9 REMARK 465 SER H 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN P 5 O HOH P 101 1.35 REMARK 500 HH TYR C 892 O HOH C 1102 1.46 REMARK 500 HG1 THR P 3 O HOH P 102 1.49 REMARK 500 H MET G 900 O HOH G 1103 1.51 REMARK 500 HH TYR E 892 O HOH E 1102 1.57 REMARK 500 HH TYR A 892 O HOH A 1104 1.60 REMARK 500 O GLY A 879 O HOH A 1101 1.86 REMARK 500 O THR G 901 O HOH G 1101 2.01 REMARK 500 O HOH A 1117 O HOH E 1114 2.01 REMARK 500 NE2 GLN P 5 O HOH P 101 2.05 REMARK 500 O HOH P 101 O HOH P 103 2.06 REMARK 500 O GLY G 879 O HOH G 1102 2.09 REMARK 500 O HOH G 1115 O HOH G 1116 2.11 REMARK 500 N MET E 856 O HOH E 1101 2.13 REMARK 500 O LYS C 875 O HOH C 1101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 878 -96.14 -88.08 REMARK 500 SER A 880 133.99 -37.67 REMARK 500 ASP A 887 -65.36 -102.40 REMARK 500 CYS A 911 141.77 72.16 REMARK 500 ASP C 877 91.72 -66.52 REMARK 500 ASP C 878 -82.25 -85.73 REMARK 500 SER C 880 143.41 -23.70 REMARK 500 ASP C 887 -70.95 -101.27 REMARK 500 CYS C 911 139.80 68.18 REMARK 500 ASP E 877 70.18 -67.54 REMARK 500 ASP E 878 -87.83 -82.33 REMARK 500 SER E 880 130.10 -26.82 REMARK 500 ASP E 887 -67.12 -103.98 REMARK 500 ASP E 889 19.55 58.62 REMARK 500 CYS E 911 140.53 70.30 REMARK 500 ASP G 878 -86.92 -67.40 REMARK 500 SER G 880 144.99 -37.56 REMARK 500 ASP G 887 -77.39 -100.70 REMARK 500 CYS G 911 138.87 69.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP C 878 GLY C 879 -148.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 870 SG REMARK 620 2 CYS A 873 SG 112.9 REMARK 620 3 HIS A 893 ND1 102.6 97.4 REMARK 620 4 CYS A 896 SG 115.4 115.9 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 885 SG REMARK 620 2 CYS A 888 SG 107.4 REMARK 620 3 CYS A 911 SG 107.9 118.8 REMARK 620 4 CYS A 914 SG 105.6 107.3 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 870 SG REMARK 620 2 CYS C 873 SG 113.9 REMARK 620 3 HIS C 893 ND1 102.0 96.7 REMARK 620 4 CYS C 896 SG 116.5 114.8 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 885 SG REMARK 620 2 CYS C 888 SG 110.7 REMARK 620 3 CYS C 911 SG 110.7 113.9 REMARK 620 4 CYS C 914 SG 104.4 107.5 109.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 870 SG REMARK 620 2 CYS E 873 SG 117.6 REMARK 620 3 HIS E 893 ND1 101.9 100.1 REMARK 620 4 CYS E 896 SG 113.4 111.8 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 885 SG REMARK 620 2 CYS E 888 SG 107.1 REMARK 620 3 CYS E 911 SG 109.6 117.0 REMARK 620 4 CYS E 914 SG 109.5 105.8 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 870 SG REMARK 620 2 CYS G 873 SG 112.5 REMARK 620 3 HIS G 893 ND1 100.5 99.0 REMARK 620 4 CYS G 896 SG 116.4 111.5 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 885 SG REMARK 620 2 CYS G 888 SG 107.7 REMARK 620 3 CYS G 911 SG 109.2 115.9 REMARK 620 4 CYS G 914 SG 106.9 109.2 107.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 4WQ D 4 through REMARK 800 GLN D 5 bound to THR D 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 4WQ F 4 through REMARK 800 GLN F 5 bound to THR F 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 4WQ H 4 through REMARK 800 GLN H 5 bound to THR H 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 4WQ P 4 through REMARK 800 GLN P 5 bound to THR P 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C11 RELATED DB: PDB DBREF 5C13 A 857 917 UNP Q5VWG9 TAF3_HUMAN 855 915 DBREF 5C13 P 1 10 PDB 5C13 5C13 1 10 DBREF 5C13 C 857 917 UNP Q5VWG9 TAF3_HUMAN 855 915 DBREF 5C13 D 1 10 PDB 5C13 5C13 1 10 DBREF 5C13 E 857 917 UNP Q5VWG9 TAF3_HUMAN 855 915 DBREF 5C13 F 1 10 PDB 5C13 5C13 1 10 DBREF 5C13 G 857 917 UNP Q5VWG9 TAF3_HUMAN 855 915 DBREF 5C13 H 1 10 PDB 5C13 5C13 1 10 SEQADV 5C13 GLY A 854 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 SER A 855 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 MET A 856 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 GLY C 854 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 SER C 855 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 MET C 856 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 GLY E 854 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 SER E 855 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 MET E 856 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 GLY G 854 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 SER G 855 UNP Q5VWG9 EXPRESSION TAG SEQADV 5C13 MET G 856 UNP Q5VWG9 EXPRESSION TAG SEQRES 1 A 64 GLY SER MET TYR VAL ILE ARG ASP GLU TRP GLY ASN GLN SEQRES 2 A 64 ILE TRP ILE CYS PRO GLY CYS ASN LYS PRO ASP ASP GLY SEQRES 3 A 64 SER PRO MET ILE GLY CYS ASP ASP CYS ASP ASP TRP TYR SEQRES 4 A 64 HIS TRP PRO CYS VAL GLY ILE MET THR ALA PRO PRO GLU SEQRES 5 A 64 GLU MET GLN TRP PHE CYS PRO LYS CYS ALA ASN LYS SEQRES 1 P 10 ALA ARG THR 4WQ GLN THR ALA ARG LYS SER SEQRES 1 C 64 GLY SER MET TYR VAL ILE ARG ASP GLU TRP GLY ASN GLN SEQRES 2 C 64 ILE TRP ILE CYS PRO GLY CYS ASN LYS PRO ASP ASP GLY SEQRES 3 C 64 SER PRO MET ILE GLY CYS ASP ASP CYS ASP ASP TRP TYR SEQRES 4 C 64 HIS TRP PRO CYS VAL GLY ILE MET THR ALA PRO PRO GLU SEQRES 5 C 64 GLU MET GLN TRP PHE CYS PRO LYS CYS ALA ASN LYS SEQRES 1 D 10 ALA ARG THR 4WQ GLN THR ALA ARG LYS SER SEQRES 1 E 64 GLY SER MET TYR VAL ILE ARG ASP GLU TRP GLY ASN GLN SEQRES 2 E 64 ILE TRP ILE CYS PRO GLY CYS ASN LYS PRO ASP ASP GLY SEQRES 3 E 64 SER PRO MET ILE GLY CYS ASP ASP CYS ASP ASP TRP TYR SEQRES 4 E 64 HIS TRP PRO CYS VAL GLY ILE MET THR ALA PRO PRO GLU SEQRES 5 E 64 GLU MET GLN TRP PHE CYS PRO LYS CYS ALA ASN LYS SEQRES 1 F 10 ALA ARG THR 4WQ GLN THR ALA ARG LYS SER SEQRES 1 G 64 GLY SER MET TYR VAL ILE ARG ASP GLU TRP GLY ASN GLN SEQRES 2 G 64 ILE TRP ILE CYS PRO GLY CYS ASN LYS PRO ASP ASP GLY SEQRES 3 G 64 SER PRO MET ILE GLY CYS ASP ASP CYS ASP ASP TRP TYR SEQRES 4 G 64 HIS TRP PRO CYS VAL GLY ILE MET THR ALA PRO PRO GLU SEQRES 5 G 64 GLU MET GLN TRP PHE CYS PRO LYS CYS ALA ASN LYS SEQRES 1 H 10 ALA ARG THR 4WQ GLN THR ALA ARG LYS SER HET 4WQ P 4 31 HET 4WQ D 4 31 HET 4WQ F 4 31 HET 4WQ H 4 31 HET ZN A1001 1 HET ZN A1002 1 HET ZN C1001 1 HET ZN C1002 1 HET ZN E1001 1 HET ZN E1002 1 HET ZN G1001 1 HET ZN G1002 1 HETNAM 4WQ (2S)-2-AMINO-7,7-DIMETHYLOCTANOIC ACID HETNAM ZN ZINC ION FORMUL 2 4WQ 4(C10 H21 N O2) FORMUL 9 ZN 8(ZN 2+) FORMUL 17 HOH *78(H2 O) HELIX 1 AA1 PRO A 895 GLY A 898 5 4 HELIX 2 AA2 PRO C 895 GLY C 898 5 4 HELIX 3 AA3 PRO E 895 GLY E 898 5 4 HELIX 4 AA4 PRO G 895 GLY G 898 5 4 SHEET 1 AA1 5 GLN A 866 TRP A 868 0 SHEET 2 AA1 5 VAL A 858 ARG A 860 -1 N ILE A 859 O ILE A 867 SHEET 3 AA1 5 THR F 3 GLN F 5 -1 O THR F 3 N ARG A 860 SHEET 4 AA1 5 MET E 882 GLY E 884 -1 N MET E 882 O 4WQ F 4 SHEET 5 AA1 5 TRP E 891 HIS E 893 -1 O TYR E 892 N ILE E 883 SHEET 1 AA2 3 TRP A 891 HIS A 893 0 SHEET 2 AA2 3 MET A 882 GLY A 884 -1 N ILE A 883 O TYR A 892 SHEET 3 AA2 3 THR P 3 4WQ P 4 -1 O 4WQ P 4 N MET A 882 SHEET 1 AA3 5 GLN C 866 ILE C 869 0 SHEET 2 AA3 5 TYR C 857 ARG C 860 -1 N ILE C 859 O ILE C 867 SHEET 3 AA3 5 THR H 3 GLN H 5 -1 O THR H 3 N ARG C 860 SHEET 4 AA3 5 MET G 882 GLY G 884 -1 N MET G 882 O 4WQ H 4 SHEET 5 AA3 5 TRP G 891 HIS G 893 -1 O TYR G 892 N ILE G 883 SHEET 1 AA4 3 TRP C 891 HIS C 893 0 SHEET 2 AA4 3 MET C 882 GLY C 884 -1 N ILE C 883 O TYR C 892 SHEET 3 AA4 3 THR D 3 4WQ D 4 -1 O 4WQ D 4 N MET C 882 SHEET 1 AA5 2 TYR E 857 ARG E 860 0 SHEET 2 AA5 2 GLN E 866 ILE E 869 -1 O ILE E 867 N ILE E 859 SHEET 1 AA6 2 VAL G 858 ARG G 860 0 SHEET 2 AA6 2 GLN G 866 TRP G 868 -1 O ILE G 867 N ILE G 859 LINK C THR P 3 N 4WQ P 4 1555 1555 1.33 LINK C 4WQ P 4 N GLN P 5 1555 1555 1.34 LINK C THR D 3 N 4WQ D 4 1555 1555 1.33 LINK C 4WQ D 4 N GLN D 5 1555 1555 1.34 LINK C THR F 3 N 4WQ F 4 1555 1555 1.32 LINK C 4WQ F 4 N GLN F 5 1555 1555 1.34 LINK C THR H 3 N 4WQ H 4 1555 1555 1.33 LINK C 4WQ H 4 N GLN H 5 1555 1555 1.34 LINK SG CYS A 870 ZN ZN A1002 1555 1555 2.21 LINK SG CYS A 873 ZN ZN A1002 1555 1555 2.35 LINK SG CYS A 885 ZN ZN A1001 1555 1555 2.39 LINK SG CYS A 888 ZN ZN A1001 1555 1555 2.23 LINK ND1 HIS A 893 ZN ZN A1002 1555 1555 2.04 LINK SG CYS A 896 ZN ZN A1002 1555 1555 2.29 LINK SG CYS A 911 ZN ZN A1001 1555 1555 2.45 LINK SG CYS A 914 ZN ZN A1001 1555 1555 2.42 LINK SG CYS C 870 ZN ZN C1002 1555 1555 2.27 LINK SG CYS C 873 ZN ZN C1002 1555 1555 2.33 LINK SG CYS C 885 ZN ZN C1001 1555 1555 2.32 LINK SG CYS C 888 ZN ZN C1001 1555 1555 2.15 LINK ND1 HIS C 893 ZN ZN C1002 1555 1555 2.03 LINK SG CYS C 896 ZN ZN C1002 1555 1555 2.26 LINK SG CYS C 911 ZN ZN C1001 1555 1555 2.43 LINK SG CYS C 914 ZN ZN C1001 1555 1555 2.42 LINK SG CYS E 870 ZN ZN E1002 1555 1555 2.26 LINK SG CYS E 873 ZN ZN E1002 1555 1555 2.29 LINK SG CYS E 885 ZN ZN E1001 1555 1555 2.40 LINK SG CYS E 888 ZN ZN E1001 1555 1555 2.18 LINK ND1 HIS E 893 ZN ZN E1002 1555 1555 2.07 LINK SG CYS E 896 ZN ZN E1002 1555 1555 2.33 LINK SG CYS E 911 ZN ZN E1001 1555 1555 2.49 LINK SG CYS E 914 ZN ZN E1001 1555 1555 2.46 LINK SG CYS G 870 ZN ZN G1002 1555 1555 2.28 LINK SG CYS G 873 ZN ZN G1002 1555 1555 2.34 LINK SG CYS G 885 ZN ZN G1001 1555 1555 2.42 LINK SG CYS G 888 ZN ZN G1001 1555 1555 2.21 LINK ND1 HIS G 893 ZN ZN G1002 1555 1555 1.92 LINK SG CYS G 896 ZN ZN G1002 1555 1555 2.30 LINK SG CYS G 911 ZN ZN G1001 1555 1555 2.36 LINK SG CYS G 914 ZN ZN G1001 1555 1555 2.47 SITE 1 AC1 5 CYS A 885 CYS A 888 PHE A 910 CYS A 911 SITE 2 AC1 5 CYS A 914 SITE 1 AC2 4 CYS A 870 CYS A 873 HIS A 893 CYS A 896 SITE 1 AC3 5 CYS C 885 CYS C 888 PHE C 910 CYS C 911 SITE 2 AC3 5 CYS C 914 SITE 1 AC4 4 CYS C 870 CYS C 873 HIS C 893 CYS C 896 SITE 1 AC5 5 CYS E 885 CYS E 888 PHE E 910 CYS E 911 SITE 2 AC5 5 CYS E 914 SITE 1 AC6 4 CYS E 870 CYS E 873 HIS E 893 CYS E 896 SITE 1 AC7 5 CYS G 885 CYS G 888 PHE G 910 CYS G 911 SITE 2 AC7 5 CYS G 914 SITE 1 AC8 4 CYS G 870 CYS G 873 HIS G 893 CYS G 896 SITE 1 AC9 8 TRP C 868 PRO C 881 MET C 882 TRP C 891 SITE 2 AC9 8 THR D 3 THR D 6 TYR G 857 VAL G 858 SITE 1 AD1 7 TYR A 857 VAL A 858 ILE A 859 PRO E 881 SITE 2 AD1 7 MET E 882 THR F 3 THR F 6 SITE 1 AD2 8 TYR C 857 VAL C 858 ILE C 859 TRP G 868 SITE 2 AD2 8 PRO G 881 MET G 882 THR H 3 THR H 6 SITE 1 AD3 9 PRO A 881 MET A 882 TRP A 891 TYR E 857 SITE 2 AD3 9 VAL E 858 THR P 3 THR P 6 HOH P 101 SITE 3 AD3 9 HOH P 103 CRYST1 30.212 50.105 85.949 90.00 90.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033099 0.000000 0.000002 0.00000 SCALE2 0.000000 0.019958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011635 0.00000 CONECT 253 4018 CONECT 284 4018 CONECT 443 4017 CONECT 477 4017 CONECT 557 4018 CONECT 611 4018 CONECT 840 4017 CONECT 886 4017 CONECT 930 942 CONECT 942 930 943 954 CONECT 943 942 944 952 955 CONECT 944 943 945 956 957 CONECT 945 944 946 958 959 CONECT 946 945 947 960 961 CONECT 947 946 948 962 963 CONECT 948 947 949 950 951 CONECT 949 948 964 965 966 CONECT 950 948 967 968 969 CONECT 951 948 970 971 972 CONECT 952 943 953 973 CONECT 953 952 CONECT 954 942 CONECT 955 943 CONECT 956 944 CONECT 957 944 CONECT 958 945 CONECT 959 945 CONECT 960 946 CONECT 961 946 CONECT 962 947 CONECT 963 947 CONECT 964 949 CONECT 965 949 CONECT 966 949 CONECT 967 950 CONECT 968 950 CONECT 969 950 CONECT 970 951 CONECT 971 951 CONECT 972 951 CONECT 973 952 CONECT 1257 4020 CONECT 1288 4020 CONECT 1447 4019 CONECT 1481 4019 CONECT 1561 4020 CONECT 1615 4020 CONECT 1844 4019 CONECT 1890 4019 CONECT 1934 1946 CONECT 1946 1934 1947 1958 CONECT 1947 1946 1948 1956 1959 CONECT 1948 1947 1949 1960 1961 CONECT 1949 1948 1950 1962 1963 CONECT 1950 1949 1951 1964 1965 CONECT 1951 1950 1952 1966 1967 CONECT 1952 1951 1953 1954 1955 CONECT 1953 1952 1968 1969 1970 CONECT 1954 1952 1971 1972 1973 CONECT 1955 1952 1974 1975 1976 CONECT 1956 1947 1957 1977 CONECT 1957 1956 CONECT 1958 1946 CONECT 1959 1947 CONECT 1960 1948 CONECT 1961 1948 CONECT 1962 1949 CONECT 1963 1949 CONECT 1964 1950 CONECT 1965 1950 CONECT 1966 1951 CONECT 1967 1951 CONECT 1968 1953 CONECT 1969 1953 CONECT 1970 1953 CONECT 1971 1954 CONECT 1972 1954 CONECT 1973 1954 CONECT 1974 1955 CONECT 1975 1955 CONECT 1976 1955 CONECT 1977 1956 CONECT 2261 4022 CONECT 2292 4022 CONECT 2451 4021 CONECT 2485 4021 CONECT 2565 4022 CONECT 2619 4022 CONECT 2848 4021 CONECT 2894 4021 CONECT 2938 2950 CONECT 2950 2938 2951 2962 CONECT 2951 2950 2952 2960 2963 CONECT 2952 2951 2953 2964 2965 CONECT 2953 2952 2954 2966 2967 CONECT 2954 2953 2955 2968 2969 CONECT 2955 2954 2956 2970 2971 CONECT 2956 2955 2957 2958 2959 CONECT 2957 2956 2972 2973 2974 CONECT 2958 2956 2975 2976 2977 CONECT 2959 2956 2978 2979 2980 CONECT 2960 2951 2961 2981 CONECT 2961 2960 CONECT 2962 2950 CONECT 2963 2951 CONECT 2964 2952 CONECT 2965 2952 CONECT 2966 2953 CONECT 2967 2953 CONECT 2968 2954 CONECT 2969 2954 CONECT 2970 2955 CONECT 2971 2955 CONECT 2972 2957 CONECT 2973 2957 CONECT 2974 2957 CONECT 2975 2958 CONECT 2976 2958 CONECT 2977 2958 CONECT 2978 2959 CONECT 2979 2959 CONECT 2980 2959 CONECT 2981 2960 CONECT 3265 4024 CONECT 3296 4024 CONECT 3455 4023 CONECT 3489 4023 CONECT 3569 4024 CONECT 3623 4024 CONECT 3852 4023 CONECT 3898 4023 CONECT 3942 3954 CONECT 3954 3942 3955 3966 CONECT 3955 3954 3956 3964 3967 CONECT 3956 3955 3957 3968 3969 CONECT 3957 3956 3958 3970 3971 CONECT 3958 3957 3959 3972 3973 CONECT 3959 3958 3960 3974 3975 CONECT 3960 3959 3961 3962 3963 CONECT 3961 3960 3976 3977 3978 CONECT 3962 3960 3979 3980 3981 CONECT 3963 3960 3982 3983 3984 CONECT 3964 3955 3965 3985 CONECT 3965 3964 CONECT 3966 3954 CONECT 3967 3955 CONECT 3968 3956 CONECT 3969 3956 CONECT 3970 3957 CONECT 3971 3957 CONECT 3972 3958 CONECT 3973 3958 CONECT 3974 3959 CONECT 3975 3959 CONECT 3976 3961 CONECT 3977 3961 CONECT 3978 3961 CONECT 3979 3962 CONECT 3980 3962 CONECT 3981 3962 CONECT 3982 3963 CONECT 3983 3963 CONECT 3984 3963 CONECT 3985 3964 CONECT 4017 443 477 840 886 CONECT 4018 253 284 557 611 CONECT 4019 1447 1481 1844 1890 CONECT 4020 1257 1288 1561 1615 CONECT 4021 2451 2485 2848 2894 CONECT 4022 2261 2292 2565 2619 CONECT 4023 3455 3489 3852 3898 CONECT 4024 3265 3296 3569 3623 MASTER 438 0 12 4 20 0 21 6 2194 8 172 24 END