HEADER CELL ADHESION 12-JUN-15 5C14 TITLE CRYSTAL STRUCTURE OF PECAM-1 D1D2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET ENDOTHELIAL CELL ADHESION MOLECULE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: D1D2 DOMAIN (UNP RESIDUES 28-229); COMPND 5 SYNONYM: PECAM-1,ENDOCAM,GPIIA',PECA1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PLATELET ENDOTHELIAL CELL ADHESION MOLECULE; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: D1D2 DOMAIN (UNP RESIDUES 28-229); COMPND 11 SYNONYM: PECAM-1,ENDOCAM,GPIIA',PECA1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PECAM1; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: PECAM1; SOURCE 13 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7215 KEYWDS IMMUNOGLOBULIN, CELL ADHESION MOLECULE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHOU,C.PADDOCK,P.NEWMAN,J.ZHU REVDAT 4 06-NOV-24 5C14 1 HETSYN REVDAT 3 29-JUL-20 5C14 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 09-MAR-16 5C14 1 JRNL REVDAT 1 06-JAN-16 5C14 0 JRNL AUTH C.PADDOCK,D.ZHOU,P.LERTKIATMONGKOL,P.J.NEWMAN,J.ZHU JRNL TITL STRUCTURAL BASIS FOR PECAM-1 HOMOPHILIC BINDING. JRNL REF BLOOD V. 127 1052 2016 JRNL REFN ESSN 1528-0020 JRNL PMID 26702061 JRNL DOI 10.1182/BLOOD-2015-07-660092 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7941 - 5.3262 1.00 5029 148 0.2238 0.2648 REMARK 3 2 5.3262 - 4.2412 1.00 5039 148 0.1709 0.2036 REMARK 3 3 4.2412 - 3.7091 1.00 5042 141 0.1972 0.2265 REMARK 3 4 3.7091 - 3.3718 1.00 5015 143 0.2458 0.3078 REMARK 3 5 3.3718 - 3.1311 1.00 5023 145 0.3041 0.3709 REMARK 3 6 3.1311 - 2.9472 1.00 5046 144 0.3559 0.3875 REMARK 3 7 2.9472 - 2.8000 1.00 5038 145 0.3987 0.4558 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.710 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3399 REMARK 3 ANGLE : 1.714 4569 REMARK 3 CHIRALITY : 0.066 534 REMARK 3 PLANARITY : 0.009 571 REMARK 3 DIHEDRAL : 17.352 1292 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 19.9177 33.0702 -0.8912 REMARK 3 T TENSOR REMARK 3 T11: 0.6149 T22: 0.6443 REMARK 3 T33: 0.4905 T12: 0.3242 REMARK 3 T13: 0.0535 T23: 0.0726 REMARK 3 L TENSOR REMARK 3 L11: 0.7233 L22: 0.5571 REMARK 3 L33: 0.7860 L12: 0.1936 REMARK 3 L13: 0.1711 L23: 0.2333 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: 0.1525 S13: 0.0919 REMARK 3 S21: -0.0286 S22: -0.0226 S23: 0.1266 REMARK 3 S31: -0.0173 S32: -0.0746 S33: -0.0201 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000210855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624, 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36261 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.170 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.79 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.1 M MGNO3, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.00500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.00500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.91700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.45850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.00500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 211.37550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.00500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 211.37550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.00500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.45850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 52.00500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 52.00500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 140.91700 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.00500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.00500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 140.91700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.00500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 211.37550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.00500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 70.45850 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.00500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 70.45850 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.00500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 211.37550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.00500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.00500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 140.91700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -1 REMARK 465 SER A 0 REMARK 465 GLN A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 205 REMARK 465 ASN A 206 REMARK 465 LEU A 207 REMARK 465 TYR A 208 REMARK 465 PHE A 209 REMARK 465 GLN A 210 REMARK 465 ARG B -1 REMARK 465 SER B 0 REMARK 465 GLN B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 GLU B 205 REMARK 465 ASN B 206 REMARK 465 LEU B 207 REMARK 465 TYR B 208 REMARK 465 PHE B 209 REMARK 465 GLN B 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 25 C1 NAG B 303 1.16 REMARK 500 ND2 ASN A 57 O5 NAG A 306 1.73 REMARK 500 ND2 ASN B 57 O5 NAG B 304 1.93 REMARK 500 NH1 ARG A 152 O GLU A 165 2.02 REMARK 500 ND2 ASN B 25 O5 NAG B 303 2.04 REMARK 500 ND2 ASN A 25 C2 NAG A 305 2.07 REMARK 500 CG ASN A 124 C1 NAG A 307 2.12 REMARK 500 OG SER B 14 O ASP B 17 2.15 REMARK 500 ND2 ASN A 124 O5 NAG A 307 2.16 REMARK 500 OG SER B 60 OE1 GLU B 65 2.17 REMARK 500 CG ASN A 25 C1 NAG A 305 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 86 -86.33 -114.20 REMARK 500 ASN A 88 -151.22 -144.72 REMARK 500 LYS A 89 71.16 47.31 REMARK 500 GLU A 130 -168.84 -101.97 REMARK 500 LYS A 146 45.13 -73.56 REMARK 500 GLN A 171 52.51 -95.11 REMARK 500 ARG A 173 -68.62 -131.83 REMARK 500 SER A 203 52.37 -112.85 REMARK 500 VAL B 86 -167.00 -109.76 REMARK 500 ASN B 88 -158.57 -145.53 REMARK 500 LYS B 89 153.96 53.63 REMARK 500 ALA B 94 -167.30 -70.56 REMARK 500 GLU B 130 -166.39 -104.18 REMARK 500 LYS B 146 47.21 -69.75 REMARK 500 ARG B 157 -54.09 -123.36 REMARK 500 GLN B 171 55.62 -95.55 REMARK 500 ARG B 173 -68.86 -134.44 REMARK 500 THR B 201 -95.36 -108.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 303 DBREF 5C14 A 1 202 UNP P16284 PECA1_HUMAN 28 229 DBREF 5C14 B 1 202 UNP P16284 PECA1_HUMAN 28 229 SEQADV 5C14 ARG A -1 UNP P16284 EXPRESSION TAG SEQADV 5C14 SER A 0 UNP P16284 EXPRESSION TAG SEQADV 5C14 SER A 203 UNP P16284 EXPRESSION TAG SEQADV 5C14 ARG A 204 UNP P16284 EXPRESSION TAG SEQADV 5C14 GLU A 205 UNP P16284 EXPRESSION TAG SEQADV 5C14 ASN A 206 UNP P16284 EXPRESSION TAG SEQADV 5C14 LEU A 207 UNP P16284 EXPRESSION TAG SEQADV 5C14 TYR A 208 UNP P16284 EXPRESSION TAG SEQADV 5C14 PHE A 209 UNP P16284 EXPRESSION TAG SEQADV 5C14 GLN A 210 UNP P16284 EXPRESSION TAG SEQADV 5C14 ARG B -1 UNP P16284 EXPRESSION TAG SEQADV 5C14 SER B 0 UNP P16284 EXPRESSION TAG SEQADV 5C14 SER B 203 UNP P16284 EXPRESSION TAG SEQADV 5C14 ARG B 204 UNP P16284 EXPRESSION TAG SEQADV 5C14 GLU B 205 UNP P16284 EXPRESSION TAG SEQADV 5C14 ASN B 206 UNP P16284 EXPRESSION TAG SEQADV 5C14 LEU B 207 UNP P16284 EXPRESSION TAG SEQADV 5C14 TYR B 208 UNP P16284 EXPRESSION TAG SEQADV 5C14 PHE B 209 UNP P16284 EXPRESSION TAG SEQADV 5C14 GLN B 210 UNP P16284 EXPRESSION TAG SEQRES 1 A 212 ARG SER GLN GLU ASN SER PHE THR ILE ASN SER VAL ASP SEQRES 2 A 212 MSE LYS SER LEU PRO ASP TRP THR VAL GLN ASN GLY LYS SEQRES 3 A 212 ASN LEU THR LEU GLN CYS PHE ALA ASP VAL SER THR THR SEQRES 4 A 212 SER HIS VAL LYS PRO GLN HIS GLN MET LEU PHE TYR LYS SEQRES 5 A 212 ASP ASP VAL LEU PHE TYR ASN ILE SER SER MET LYS SER SEQRES 6 A 212 THR GLU SER TYR PHE ILE PRO GLU VAL ARG ILE TYR ASP SEQRES 7 A 212 SER GLY THR TYR LYS CYS THR VAL ILE VAL ASN ASN LYS SEQRES 8 A 212 GLU LYS THR THR ALA GLU TYR GLN LEU LEU VAL GLU GLY SEQRES 9 A 212 VAL PRO SER PRO ARG VAL THR LEU ASP LYS LYS GLU ALA SEQRES 10 A 212 ILE GLN GLY GLY ILE VAL ARG VAL ASN CYS SER VAL PRO SEQRES 11 A 212 GLU GLU LYS ALA PRO ILE HIS PHE THR ILE GLU LYS LEU SEQRES 12 A 212 GLU LEU ASN GLU LYS MET VAL LYS LEU LYS ARG GLU LYS SEQRES 13 A 212 ASN SER ARG ASP GLN ASN PHE VAL ILE LEU GLU PHE PRO SEQRES 14 A 212 VAL GLU GLU GLN ASP ARG VAL LEU SER PHE ARG CYS GLN SEQRES 15 A 212 ALA ARG ILE ILE SER GLY ILE HIS MET GLN THR SER GLU SEQRES 16 A 212 SER THR LYS SER GLU LEU VAL THR VAL SER ARG GLU ASN SEQRES 17 A 212 LEU TYR PHE GLN SEQRES 1 B 212 ARG SER GLN GLU ASN SER PHE THR ILE ASN SER VAL ASP SEQRES 2 B 212 MET LYS SER LEU PRO ASP TRP THR VAL GLN ASN GLY LYS SEQRES 3 B 212 ASN LEU THR LEU GLN CYS PHE ALA ASP VAL SER THR THR SEQRES 4 B 212 SER HIS VAL LYS PRO GLN HIS GLN MET LEU PHE TYR LYS SEQRES 5 B 212 ASP ASP VAL LEU PHE TYR ASN ILE SER SER MET LYS SER SEQRES 6 B 212 THR GLU SER TYR PHE ILE PRO GLU VAL ARG ILE TYR ASP SEQRES 7 B 212 SER GLY THR TYR LYS CYS THR VAL ILE VAL ASN ASN LYS SEQRES 8 B 212 GLU LYS THR THR ALA GLU TYR GLN LEU LEU VAL GLU GLY SEQRES 9 B 212 VAL PRO SER PRO ARG VAL THR LEU ASP LYS LYS GLU ALA SEQRES 10 B 212 ILE GLN GLY GLY ILE VAL ARG VAL ASN CYS SER VAL PRO SEQRES 11 B 212 GLU GLU LYS ALA PRO ILE HIS PHE THR ILE GLU LYS LEU SEQRES 12 B 212 GLU LEU ASN GLU LYS MET VAL LYS LEU LYS ARG GLU LYS SEQRES 13 B 212 ASN SER ARG ASP GLN ASN PHE VAL ILE LEU GLU PHE PRO SEQRES 14 B 212 VAL GLU GLU GLN ASP ARG VAL LEU SER PHE ARG CYS GLN SEQRES 15 B 212 ALA ARG ILE ILE SER GLY ILE HIS MET GLN THR SER GLU SEQRES 16 B 212 SER THR LYS SER GLU LEU VAL THR VAL SER ARG GLU ASN SEQRES 17 B 212 LEU TYR PHE GLN MODRES 5C14 MSE A 12 MET MODIFIED RESIDUE HET MSE A 12 8 HET GOL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET CU A 304 1 HET NAG A 305 14 HET NAG A 306 14 HET NAG A 307 14 HET TRS A 308 8 HET GOL B 301 6 HET GOL B 302 6 HET NAG B 303 14 HET NAG B 304 14 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM CU COPPER (II) ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN TRS TRIS BUFFER FORMUL 1 MSE C5 H11 N O2 SE FORMUL 3 GOL 5(C3 H8 O3) FORMUL 6 CU CU 2+ FORMUL 7 NAG 5(C8 H15 N O6) FORMUL 10 TRS C4 H12 N O3 1+ FORMUL 15 HOH *27(H2 O) HELIX 1 AA1 ARG A 73 SER A 77 5 5 SHEET 1 AA1 3 PHE A 5 LEU A 15 0 SHEET 2 AA1 3 LEU A 26 THR A 36 -1 O THR A 27 N LEU A 15 SHEET 3 AA1 3 THR A 64 ILE A 69 -1 O ILE A 69 N LEU A 26 SHEET 1 AA2 5 THR A 19 GLN A 21 0 SHEET 2 AA2 5 TYR A 96 GLU A 101 1 O GLU A 101 N VAL A 20 SHEET 3 AA2 5 GLY A 78 ILE A 85 -1 N TYR A 80 O TYR A 96 SHEET 4 AA2 5 HIS A 44 LYS A 50 -1 N TYR A 49 O LYS A 81 SHEET 5 AA2 5 VAL A 53 SER A 60 -1 O PHE A 55 N PHE A 48 SHEET 1 AA3 4 THR A 19 GLN A 21 0 SHEET 2 AA3 4 TYR A 96 GLU A 101 1 O GLU A 101 N VAL A 20 SHEET 3 AA3 4 GLY A 78 ILE A 85 -1 N TYR A 80 O TYR A 96 SHEET 4 AA3 4 LYS A 91 THR A 92 -1 O LYS A 91 N VAL A 84 SHEET 1 AA4 3 ARG A 107 LEU A 110 0 SHEET 2 AA4 3 ILE A 120 SER A 126 -1 O ASN A 124 N THR A 109 SHEET 3 AA4 3 PHE A 161 PRO A 167 -1 O PHE A 166 N VAL A 121 SHEET 1 AA5 7 VAL A 148 ASN A 155 0 SHEET 2 AA5 7 ILE A 134 GLU A 142 -1 N PHE A 136 O LYS A 154 SHEET 3 AA5 7 VAL A 174 THR A 191 -1 O SER A 176 N LEU A 141 SHEET 4 AA5 7 LEU B 199 VAL B 200 -1 O LEU B 199 N LEU A 175 SHEET 5 AA5 7 VAL A 174 THR A 191 -1 N LEU A 175 O LEU B 199 SHEET 6 AA5 7 VAL B 174 THR B 191 -1 O HIS B 188 N GLY A 186 SHEET 7 AA5 7 THR A 195 LYS A 196 -1 N THR A 195 O CYS B 179 SHEET 1 AA6 4 VAL B 148 ASN B 155 0 SHEET 2 AA6 4 HIS B 135 GLU B 142 -1 N PHE B 136 O LYS B 154 SHEET 3 AA6 4 VAL B 174 THR B 191 -1 O ARG B 178 N GLU B 139 SHEET 4 AA6 4 VAL A 200 THR A 201 -1 N VAL A 200 O LEU B 175 SHEET 1 AA7 3 THR B 6 LEU B 15 0 SHEET 2 AA7 3 LEU B 26 SER B 35 -1 O GLN B 29 N LYS B 13 SHEET 3 AA7 3 GLU B 65 ILE B 69 -1 O TYR B 67 N LEU B 28 SHEET 1 AA8 5 THR B 19 GLN B 21 0 SHEET 2 AA8 5 TYR B 96 GLU B 101 1 O GLU B 101 N VAL B 20 SHEET 3 AA8 5 GLY B 78 ILE B 85 -1 N TYR B 80 O TYR B 96 SHEET 4 AA8 5 HIS B 44 LYS B 50 -1 N LEU B 47 O THR B 83 SHEET 5 AA8 5 VAL B 53 SER B 60 -1 O TYR B 56 N PHE B 48 SHEET 1 AA9 4 THR B 19 GLN B 21 0 SHEET 2 AA9 4 TYR B 96 GLU B 101 1 O GLU B 101 N VAL B 20 SHEET 3 AA9 4 GLY B 78 ILE B 85 -1 N TYR B 80 O TYR B 96 SHEET 4 AA9 4 GLU B 90 THR B 92 -1 O LYS B 91 N VAL B 84 SHEET 1 AB1 3 ARG B 107 LEU B 110 0 SHEET 2 AB1 3 ILE B 120 SER B 126 -1 O ASN B 124 N THR B 109 SHEET 3 AB1 3 PHE B 161 PRO B 167 -1 O PHE B 166 N VAL B 121 SSBOND 1 CYS A 30 CYS A 82 1555 1555 2.02 SSBOND 2 CYS A 125 CYS A 179 1555 1555 2.00 SSBOND 3 CYS B 30 CYS B 82 1555 1555 2.02 SSBOND 4 CYS B 125 CYS B 179 1555 1555 2.04 LINK C ASP A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N LYS A 13 1555 1555 1.32 LINK ND2 ASN A 25 C1 NAG A 305 1555 1555 1.35 LINK ND2 ASN A 57 C1 NAG A 306 1555 1555 1.35 LINK ND2 ASN A 124 C1 NAG A 307 1555 1555 1.24 LINK ND2 ASN B 57 C1 NAG B 304 1555 1555 1.23 CISPEP 1 LEU A 15 PRO A 16 0 9.72 CISPEP 2 ALA A 132 PRO A 133 0 4.48 CISPEP 3 LEU B 15 PRO B 16 0 11.54 CISPEP 4 ALA B 132 PRO B 133 0 0.84 CRYST1 104.010 104.010 281.834 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009614 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003548 0.00000 CONECT 56 62 CONECT 62 56 63 CONECT 63 62 64 66 CONECT 64 63 65 70 CONECT 65 64 CONECT 66 63 67 CONECT 67 66 68 CONECT 68 67 69 CONECT 69 68 CONECT 70 64 CONECT 173 3254 CONECT 211 641 CONECT 439 3268 CONECT 641 211 CONECT 964 3282 CONECT 970 1425 CONECT 1425 970 CONECT 1828 2258 CONECT 2056 3330 CONECT 2258 1828 CONECT 2587 3042 CONECT 3042 2587 CONECT 3235 3236 3237 CONECT 3236 3235 CONECT 3237 3235 3238 3239 CONECT 3238 3237 CONECT 3239 3237 3240 CONECT 3240 3239 CONECT 3241 3242 3243 CONECT 3242 3241 CONECT 3243 3241 3244 3245 CONECT 3244 3243 CONECT 3245 3243 3246 CONECT 3246 3245 CONECT 3247 3248 3249 CONECT 3248 3247 CONECT 3249 3247 3250 3251 CONECT 3250 3249 CONECT 3251 3249 3252 CONECT 3252 3251 CONECT 3254 173 3255 3265 CONECT 3255 3254 3256 3262 CONECT 3256 3255 3257 3263 CONECT 3257 3256 3258 3264 CONECT 3258 3257 3259 3265 CONECT 3259 3258 3266 CONECT 3260 3261 3262 3267 CONECT 3261 3260 CONECT 3262 3255 3260 CONECT 3263 3256 CONECT 3264 3257 CONECT 3265 3254 3258 CONECT 3266 3259 CONECT 3267 3260 CONECT 3268 439 3269 3279 CONECT 3269 3268 3270 3276 CONECT 3270 3269 3271 3277 CONECT 3271 3270 3272 3278 CONECT 3272 3271 3273 3279 CONECT 3273 3272 3280 CONECT 3274 3275 3276 3281 CONECT 3275 3274 CONECT 3276 3269 3274 CONECT 3277 3270 CONECT 3278 3271 CONECT 3279 3268 3272 CONECT 3280 3273 CONECT 3281 3274 CONECT 3282 964 3283 3293 CONECT 3283 3282 3284 3290 CONECT 3284 3283 3285 3291 CONECT 3285 3284 3286 3292 CONECT 3286 3285 3287 3293 CONECT 3287 3286 3294 CONECT 3288 3289 3290 3295 CONECT 3289 3288 CONECT 3290 3283 3288 CONECT 3291 3284 CONECT 3292 3285 CONECT 3293 3282 3286 CONECT 3294 3287 CONECT 3295 3288 CONECT 3296 3297 3298 3299 3300 CONECT 3297 3296 3301 CONECT 3298 3296 3302 CONECT 3299 3296 3303 CONECT 3300 3296 CONECT 3301 3297 CONECT 3302 3298 CONECT 3303 3299 CONECT 3304 3305 3306 CONECT 3305 3304 CONECT 3306 3304 3307 3308 CONECT 3307 3306 CONECT 3308 3306 3309 CONECT 3309 3308 CONECT 3310 3311 3312 CONECT 3311 3310 CONECT 3312 3310 3313 3314 CONECT 3313 3312 CONECT 3314 3312 3315 CONECT 3315 3314 CONECT 3316 3317 3327 CONECT 3317 3316 3318 3324 CONECT 3318 3317 3319 3325 CONECT 3319 3318 3320 3326 CONECT 3320 3319 3321 3327 CONECT 3321 3320 3328 CONECT 3322 3323 3324 3329 CONECT 3323 3322 CONECT 3324 3317 3322 CONECT 3325 3318 CONECT 3326 3319 CONECT 3327 3316 3320 CONECT 3328 3321 CONECT 3329 3322 CONECT 3330 2056 3331 3341 CONECT 3331 3330 3332 3338 CONECT 3332 3331 3333 3339 CONECT 3333 3332 3334 3340 CONECT 3334 3333 3335 3341 CONECT 3335 3334 3342 CONECT 3336 3337 3338 3343 CONECT 3337 3336 CONECT 3338 3331 3336 CONECT 3339 3332 CONECT 3340 3333 CONECT 3341 3330 3334 CONECT 3342 3335 CONECT 3343 3336 MASTER 368 0 13 1 41 0 0 6 3368 2 130 34 END