HEADER TRANSFERASE 14-JUN-15 5C1I TITLE M1A58 TRNA METHYLTRANSFERASE MUTANT - D170A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE TRMI; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TRNA(M1A58)-METHYLTRANSFERASE,TRNA(M1A58)MTASE; COMPND 5 EC: 2.1.1.220; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 GENE: TRMI, TT_C0244; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSFERASE, TRMI, M1A EXPDTA X-RAY DIFFRACTION AUTHOR L.PONCHON,C.DEGUT,M.FOLLY-KLAN,P.BARRAUD,C.TISNE REVDAT 4 10-JAN-24 5C1I 1 REMARK REVDAT 3 02-MAR-16 5C1I 1 JRNL REVDAT 2 29-JUL-15 5C1I 1 JRNL REVDAT 1 24-JUN-15 5C1I 0 JRNL AUTH C.DEGUT,L.PONCHON,M.FOLLY-KLAN,P.BARRAUD,C.TISNE JRNL TITL THE M1A58 MODIFICATION IN EUBACTERIAL TRNA: AN OVERVIEW OF JRNL TITL 2 TRNA RECOGNITION AND MECHANISM OF CATALYSIS BY TRMI. JRNL REF BIOPHYS.CHEM. V. 210 27 2016 JRNL REFN ISSN 0301-4622 JRNL PMID 26189113 JRNL DOI 10.1016/J.BPC.2015.06.012 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21045 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 95.635 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68600 REMARK 200 R SYM FOR SHELL (I) : 0.68600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: 2PWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE AND 10%, REMARK 280 ISOPROPANOL (V/V), PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.14700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 204.29400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 153.22050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 255.36750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.07350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 102.14700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 204.29400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 255.36750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 153.22050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.07350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 10 REMARK 465 ASP A 11 REMARK 465 ARG A 12 REMARK 465 LYS A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 ALA A 16 REMARK 465 TYR A 17 REMARK 465 LYS A 22 REMARK 465 GLU A 23 REMARK 465 GLY A 24 REMARK 465 GLY A 25 REMARK 465 VAL A 26 REMARK 465 PHE A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 LYS A 31 REMARK 465 GLY A 32 REMARK 465 SER A 33 REMARK 465 VAL A 34 REMARK 465 PRO A 35 REMARK 465 ARG A 49 REMARK 465 THR A 50 REMARK 465 HIS A 51 REMARK 465 LEU A 52 REMARK 465 GLY A 53 REMARK 465 GLU A 54 REMARK 465 GLU A 55 REMARK 465 LEU A 56 REMARK 465 SER A 255 REMARK 465 ASP C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 GLY C 14 REMARK 465 ARG C 15 REMARK 465 PRO C 21 REMARK 465 LYS C 22 REMARK 465 GLU C 23 REMARK 465 GLY C 24 REMARK 465 GLY C 25 REMARK 465 VAL C 26 REMARK 465 PHE C 27 REMARK 465 HIS C 28 REMARK 465 HIS C 29 REMARK 465 HIS C 30 REMARK 465 LYS C 31 REMARK 465 GLY C 32 REMARK 465 SER C 33 REMARK 465 VAL C 34 REMARK 465 PRO C 35 REMARK 465 HIS C 36 REMARK 465 GLU C 37 REMARK 465 ALA C 38 REMARK 465 LEU C 39 REMARK 465 LEU C 40 REMARK 465 GLU C 41 REMARK 465 ALA C 42 REMARK 465 GLY C 43 REMARK 465 PRO C 44 REMARK 465 GLY C 45 REMARK 465 GLY C 46 REMARK 465 VAL C 47 REMARK 465 VAL C 48 REMARK 465 ARG C 49 REMARK 465 THR C 50 REMARK 465 HIS C 51 REMARK 465 LEU C 52 REMARK 465 GLY C 53 REMARK 465 GLU C 54 REMARK 465 GLU C 55 REMARK 465 LEU C 56 REMARK 465 GLY D 5 REMARK 465 PRO D 6 REMARK 465 LEU D 7 REMARK 465 LEU D 8 REMARK 465 LEU D 9 REMARK 465 LYS D 10 REMARK 465 ASP D 11 REMARK 465 ARG D 12 REMARK 465 LYS D 13 REMARK 465 GLY D 14 REMARK 465 ARG D 15 REMARK 465 ALA D 16 REMARK 465 TYR D 17 REMARK 465 LEU D 18 REMARK 465 VAL D 19 REMARK 465 PHE D 20 REMARK 465 PRO D 21 REMARK 465 LYS D 22 REMARK 465 GLU D 23 REMARK 465 GLY D 24 REMARK 465 GLY D 25 REMARK 465 VAL D 26 REMARK 465 PHE D 27 REMARK 465 HIS D 28 REMARK 465 HIS D 29 REMARK 465 HIS D 30 REMARK 465 LYS D 31 REMARK 465 GLY D 32 REMARK 465 SER D 33 REMARK 465 VAL D 34 REMARK 465 PRO D 35 REMARK 465 HIS D 36 REMARK 465 GLU D 37 REMARK 465 ALA D 38 REMARK 465 LEU D 39 REMARK 465 LEU D 40 REMARK 465 GLU D 41 REMARK 465 ALA D 42 REMARK 465 GLY D 43 REMARK 465 PRO D 44 REMARK 465 GLY D 45 REMARK 465 GLY D 46 REMARK 465 VAL D 47 REMARK 465 VAL D 48 REMARK 465 ARG D 49 REMARK 465 THR D 50 REMARK 465 HIS D 51 REMARK 465 LEU D 52 REMARK 465 GLY D 53 REMARK 465 GLU D 54 REMARK 465 GLU D 55 REMARK 465 LEU D 56 REMARK 465 SER D 57 REMARK 465 VAL D 58 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 TRP C 252 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 252 CZ3 CH2 REMARK 470 HIS D 59 CG ND1 CD2 CE1 NE2 REMARK 470 ARG D 60 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 403 O HOH D 405 1.98 REMARK 500 NH1 ARG A 96 O ALA A 163 2.02 REMARK 500 O ALA A 157 NZ LYS A 180 2.02 REMARK 500 OD2 ASP A 81 OG1 THR A 243 2.08 REMARK 500 NH1 ARG B 229 O HOH B 401 2.08 REMARK 500 O LYS D 253 N SER D 255 2.10 REMARK 500 O ALA C 157 NZ LYS C 180 2.12 REMARK 500 O3 SO4 B 301 O HOH B 402 2.14 REMARK 500 NZ LYS C 80 O VAL C 221 2.15 REMARK 500 OG1 THR C 77 O HOH C 301 2.18 REMARK 500 OE1 GLU D 117 O HOH D 401 2.18 REMARK 500 O LEU C 154 N ALA C 157 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 72 CG ARG B 72 CD 0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 72 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 PRO B 76 C - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 PRO C 6 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 102 -174.30 -47.20 REMARK 500 GLU A 117 -96.00 44.09 REMARK 500 LYS A 118 62.42 -150.37 REMARK 500 ALA A 210 37.68 -99.48 REMARK 500 ALA A 233 88.46 -164.03 REMARK 500 HIS A 242 135.26 70.29 REMARK 500 GLU B 23 108.92 -53.56 REMARK 500 HIS B 30 -126.94 120.34 REMARK 500 THR B 243 -56.10 -122.45 REMARK 500 GLN C 143 70.89 -113.99 REMARK 500 ASP C 188 -12.05 82.42 REMARK 500 ALA C 233 105.15 -162.64 REMARK 500 VAL C 240 95.85 -57.76 REMARK 500 SER D 104 120.75 79.75 REMARK 500 GLU D 173 58.50 -103.10 REMARK 500 LYS D 186 170.43 -56.11 REMARK 500 ALA D 233 107.52 -164.66 REMARK 500 ALA D 244 168.59 175.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 118 GLY A 119 139.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PWY RELATED DB: PDB REMARK 900 WILD TYPE STRUCTURE DBREF 5C1I A 5 255 UNP Q8GBB2 TRMI_THET2 5 255 DBREF 5C1I B 5 255 UNP Q8GBB2 TRMI_THET2 5 255 DBREF 5C1I C 5 255 UNP Q8GBB2 TRMI_THET2 5 255 DBREF 5C1I D 5 255 UNP Q8GBB2 TRMI_THET2 5 255 SEQADV 5C1I ALA A 170 UNP Q8GBB2 ASP 170 ENGINEERED MUTATION SEQADV 5C1I GLY A 254 UNP Q8GBB2 ALA 254 CONFLICT SEQADV 5C1I ALA B 170 UNP Q8GBB2 ASP 170 ENGINEERED MUTATION SEQADV 5C1I GLY B 254 UNP Q8GBB2 ALA 254 CONFLICT SEQADV 5C1I ALA C 170 UNP Q8GBB2 ASP 170 ENGINEERED MUTATION SEQADV 5C1I GLY C 254 UNP Q8GBB2 ALA 254 CONFLICT SEQADV 5C1I ALA D 170 UNP Q8GBB2 ASP 170 ENGINEERED MUTATION SEQADV 5C1I GLY D 254 UNP Q8GBB2 ALA 254 CONFLICT SEQRES 1 A 251 GLY PRO LEU LEU LEU LYS ASP ARG LYS GLY ARG ALA TYR SEQRES 2 A 251 LEU VAL PHE PRO LYS GLU GLY GLY VAL PHE HIS HIS HIS SEQRES 3 A 251 LYS GLY SER VAL PRO HIS GLU ALA LEU LEU GLU ALA GLY SEQRES 4 A 251 PRO GLY GLY VAL VAL ARG THR HIS LEU GLY GLU GLU LEU SEQRES 5 A 251 SER VAL HIS ARG PRO THR LEU GLU GLU TYR LEU LEU HIS SEQRES 6 A 251 MET LYS ARG SER ALA THR PRO THR TYR PRO LYS ASP ALA SEQRES 7 A 251 SER ALA MET VAL THR LEU LEU ASP LEU ALA PRO GLY MET SEQRES 8 A 251 ARG VAL LEU GLU ALA GLY THR GLY SER GLY GLY LEU THR SEQRES 9 A 251 LEU PHE LEU ALA ARG ALA VAL GLY GLU LYS GLY LEU VAL SEQRES 10 A 251 GLU SER TYR GLU ALA ARG PRO HIS HIS LEU ALA GLN ALA SEQRES 11 A 251 GLU ARG ASN VAL ARG ALA PHE TRP GLN VAL GLU ASN VAL SEQRES 12 A 251 ARG PHE HIS LEU GLY LYS LEU GLU GLU ALA GLU LEU GLU SEQRES 13 A 251 GLU ALA ALA TYR ASP GLY VAL ALA LEU ALA LEU MET GLU SEQRES 14 A 251 PRO TRP LYS VAL LEU GLU LYS ALA ALA LEU ALA LEU LYS SEQRES 15 A 251 PRO ASP ARG PHE LEU VAL ALA TYR LEU PRO ASN ILE THR SEQRES 16 A 251 GLN VAL LEU GLU LEU VAL ARG ALA ALA GLU ALA HIS PRO SEQRES 17 A 251 PHE ARG LEU GLU ARG VAL LEU GLU VAL GLY TRP ARG GLU SEQRES 18 A 251 TRP GLU VAL ARG LEU PRO VAL ALA HIS PRO ARG PHE GLN SEQRES 19 A 251 GLN VAL GLY HIS THR ALA PHE LEU VAL ALA LEU ARG ARG SEQRES 20 A 251 TRP LYS GLY SER SEQRES 1 B 251 GLY PRO LEU LEU LEU LYS ASP ARG LYS GLY ARG ALA TYR SEQRES 2 B 251 LEU VAL PHE PRO LYS GLU GLY GLY VAL PHE HIS HIS HIS SEQRES 3 B 251 LYS GLY SER VAL PRO HIS GLU ALA LEU LEU GLU ALA GLY SEQRES 4 B 251 PRO GLY GLY VAL VAL ARG THR HIS LEU GLY GLU GLU LEU SEQRES 5 B 251 SER VAL HIS ARG PRO THR LEU GLU GLU TYR LEU LEU HIS SEQRES 6 B 251 MET LYS ARG SER ALA THR PRO THR TYR PRO LYS ASP ALA SEQRES 7 B 251 SER ALA MET VAL THR LEU LEU ASP LEU ALA PRO GLY MET SEQRES 8 B 251 ARG VAL LEU GLU ALA GLY THR GLY SER GLY GLY LEU THR SEQRES 9 B 251 LEU PHE LEU ALA ARG ALA VAL GLY GLU LYS GLY LEU VAL SEQRES 10 B 251 GLU SER TYR GLU ALA ARG PRO HIS HIS LEU ALA GLN ALA SEQRES 11 B 251 GLU ARG ASN VAL ARG ALA PHE TRP GLN VAL GLU ASN VAL SEQRES 12 B 251 ARG PHE HIS LEU GLY LYS LEU GLU GLU ALA GLU LEU GLU SEQRES 13 B 251 GLU ALA ALA TYR ASP GLY VAL ALA LEU ALA LEU MET GLU SEQRES 14 B 251 PRO TRP LYS VAL LEU GLU LYS ALA ALA LEU ALA LEU LYS SEQRES 15 B 251 PRO ASP ARG PHE LEU VAL ALA TYR LEU PRO ASN ILE THR SEQRES 16 B 251 GLN VAL LEU GLU LEU VAL ARG ALA ALA GLU ALA HIS PRO SEQRES 17 B 251 PHE ARG LEU GLU ARG VAL LEU GLU VAL GLY TRP ARG GLU SEQRES 18 B 251 TRP GLU VAL ARG LEU PRO VAL ALA HIS PRO ARG PHE GLN SEQRES 19 B 251 GLN VAL GLY HIS THR ALA PHE LEU VAL ALA LEU ARG ARG SEQRES 20 B 251 TRP LYS GLY SER SEQRES 1 C 251 GLY PRO LEU LEU LEU LYS ASP ARG LYS GLY ARG ALA TYR SEQRES 2 C 251 LEU VAL PHE PRO LYS GLU GLY GLY VAL PHE HIS HIS HIS SEQRES 3 C 251 LYS GLY SER VAL PRO HIS GLU ALA LEU LEU GLU ALA GLY SEQRES 4 C 251 PRO GLY GLY VAL VAL ARG THR HIS LEU GLY GLU GLU LEU SEQRES 5 C 251 SER VAL HIS ARG PRO THR LEU GLU GLU TYR LEU LEU HIS SEQRES 6 C 251 MET LYS ARG SER ALA THR PRO THR TYR PRO LYS ASP ALA SEQRES 7 C 251 SER ALA MET VAL THR LEU LEU ASP LEU ALA PRO GLY MET SEQRES 8 C 251 ARG VAL LEU GLU ALA GLY THR GLY SER GLY GLY LEU THR SEQRES 9 C 251 LEU PHE LEU ALA ARG ALA VAL GLY GLU LYS GLY LEU VAL SEQRES 10 C 251 GLU SER TYR GLU ALA ARG PRO HIS HIS LEU ALA GLN ALA SEQRES 11 C 251 GLU ARG ASN VAL ARG ALA PHE TRP GLN VAL GLU ASN VAL SEQRES 12 C 251 ARG PHE HIS LEU GLY LYS LEU GLU GLU ALA GLU LEU GLU SEQRES 13 C 251 GLU ALA ALA TYR ASP GLY VAL ALA LEU ALA LEU MET GLU SEQRES 14 C 251 PRO TRP LYS VAL LEU GLU LYS ALA ALA LEU ALA LEU LYS SEQRES 15 C 251 PRO ASP ARG PHE LEU VAL ALA TYR LEU PRO ASN ILE THR SEQRES 16 C 251 GLN VAL LEU GLU LEU VAL ARG ALA ALA GLU ALA HIS PRO SEQRES 17 C 251 PHE ARG LEU GLU ARG VAL LEU GLU VAL GLY TRP ARG GLU SEQRES 18 C 251 TRP GLU VAL ARG LEU PRO VAL ALA HIS PRO ARG PHE GLN SEQRES 19 C 251 GLN VAL GLY HIS THR ALA PHE LEU VAL ALA LEU ARG ARG SEQRES 20 C 251 TRP LYS GLY SER SEQRES 1 D 251 GLY PRO LEU LEU LEU LYS ASP ARG LYS GLY ARG ALA TYR SEQRES 2 D 251 LEU VAL PHE PRO LYS GLU GLY GLY VAL PHE HIS HIS HIS SEQRES 3 D 251 LYS GLY SER VAL PRO HIS GLU ALA LEU LEU GLU ALA GLY SEQRES 4 D 251 PRO GLY GLY VAL VAL ARG THR HIS LEU GLY GLU GLU LEU SEQRES 5 D 251 SER VAL HIS ARG PRO THR LEU GLU GLU TYR LEU LEU HIS SEQRES 6 D 251 MET LYS ARG SER ALA THR PRO THR TYR PRO LYS ASP ALA SEQRES 7 D 251 SER ALA MET VAL THR LEU LEU ASP LEU ALA PRO GLY MET SEQRES 8 D 251 ARG VAL LEU GLU ALA GLY THR GLY SER GLY GLY LEU THR SEQRES 9 D 251 LEU PHE LEU ALA ARG ALA VAL GLY GLU LYS GLY LEU VAL SEQRES 10 D 251 GLU SER TYR GLU ALA ARG PRO HIS HIS LEU ALA GLN ALA SEQRES 11 D 251 GLU ARG ASN VAL ARG ALA PHE TRP GLN VAL GLU ASN VAL SEQRES 12 D 251 ARG PHE HIS LEU GLY LYS LEU GLU GLU ALA GLU LEU GLU SEQRES 13 D 251 GLU ALA ALA TYR ASP GLY VAL ALA LEU ALA LEU MET GLU SEQRES 14 D 251 PRO TRP LYS VAL LEU GLU LYS ALA ALA LEU ALA LEU LYS SEQRES 15 D 251 PRO ASP ARG PHE LEU VAL ALA TYR LEU PRO ASN ILE THR SEQRES 16 D 251 GLN VAL LEU GLU LEU VAL ARG ALA ALA GLU ALA HIS PRO SEQRES 17 D 251 PHE ARG LEU GLU ARG VAL LEU GLU VAL GLY TRP ARG GLU SEQRES 18 D 251 TRP GLU VAL ARG LEU PRO VAL ALA HIS PRO ARG PHE GLN SEQRES 19 D 251 GLN VAL GLY HIS THR ALA PHE LEU VAL ALA LEU ARG ARG SEQRES 20 D 251 TRP LYS GLY SER HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 D 301 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *22(H2 O) HELIX 1 AA1 GLU A 37 GLY A 43 1 7 HELIX 2 AA2 THR A 62 MET A 70 1 9 HELIX 3 AA3 TYR A 78 LEU A 89 1 12 HELIX 4 AA4 GLY A 105 GLY A 116 1 12 HELIX 5 AA5 ARG A 127 TRP A 142 1 16 HELIX 6 AA6 GLU A 173 LYS A 176 5 4 HELIX 7 AA7 VAL A 177 ALA A 184 1 8 HELIX 8 AA8 ASN A 197 ALA A 208 1 12 HELIX 9 AA9 GLU A 209 HIS A 211 5 3 HELIX 10 AB1 HIS B 36 GLY B 43 1 8 HELIX 11 AB2 THR B 62 MET B 70 1 9 HELIX 12 AB3 TYR B 78 ASP B 90 1 13 HELIX 13 AB4 GLY B 105 GLY B 116 1 12 HELIX 14 AB5 ARG B 127 TRP B 142 1 16 HELIX 15 AB6 GLU B 173 LYS B 176 5 4 HELIX 16 AB7 VAL B 177 ALA B 184 1 8 HELIX 17 AB8 ASN B 197 GLU B 209 1 13 HELIX 18 AB9 THR C 62 MET C 70 1 9 HELIX 19 AC1 TYR C 78 ASP C 90 1 13 HELIX 20 AC2 GLY C 105 GLY C 116 1 12 HELIX 21 AC3 PRO C 128 TRP C 142 1 15 HELIX 22 AC4 GLU C 173 LYS C 176 5 4 HELIX 23 AC5 VAL C 177 ALA C 184 1 8 HELIX 24 AC6 ASN C 197 ALA C 208 1 12 HELIX 25 AC7 GLU C 209 HIS C 211 5 3 HELIX 26 AC8 THR D 62 MET D 70 1 9 HELIX 27 AC9 TYR D 78 ASP D 90 1 13 HELIX 28 AD1 GLY D 105 GLY D 116 1 12 HELIX 29 AD2 ARG D 127 TRP D 142 1 16 HELIX 30 AD3 GLU D 173 LYS D 176 5 4 HELIX 31 AD4 VAL D 177 ALA D 184 1 8 HELIX 32 AD5 ASN D 197 GLU D 209 1 13 SHEET 1 AA114 VAL A 147 LEU A 151 0 SHEET 2 AA114 LEU A 120 GLU A 125 1 N VAL A 121 O ARG A 148 SHEET 3 AA114 ARG A 96 ALA A 100 1 N GLU A 99 O TYR A 124 SHEET 4 AA114 TYR A 164 LEU A 169 1 O ALA A 168 N LEU A 98 SHEET 5 AA114 LEU A 185 LEU A 195 1 O VAL A 192 N LEU A 169 SHEET 6 AA114 PHE A 245 ARG A 250 -1 O PHE A 245 N LEU A 195 SHEET 7 AA114 ARG A 214 ARG A 229 -1 N LEU A 219 O LEU A 246 SHEET 8 AA114 PHE C 213 ARG C 229 -1 O GLU C 220 N ARG A 224 SHEET 9 AA114 PHE C 245 ARG C 251 -1 O ALA C 248 N ARG C 217 SHEET 10 AA114 LEU C 185 LEU C 195 -1 N LEU C 195 O PHE C 245 SHEET 11 AA114 TYR C 164 LEU C 169 1 N LEU C 169 O TYR C 194 SHEET 12 AA114 ARG C 96 GLU C 99 1 N LEU C 98 O ALA C 168 SHEET 13 AA114 LEU C 120 GLU C 125 1 O TYR C 124 N GLU C 99 SHEET 14 AA114 VAL C 147 LEU C 151 1 O ARG C 148 N VAL C 121 SHEET 1 AA2 4 VAL A 232 PRO A 235 0 SHEET 2 AA2 4 ARG A 214 ARG A 229 -1 N GLU A 227 O HIS A 234 SHEET 3 AA2 4 PHE C 213 ARG C 229 -1 O GLU C 220 N ARG A 224 SHEET 4 AA2 4 VAL C 232 PRO C 235 -1 O HIS C 234 N GLU C 227 SHEET 1 AA3 4 ALA B 16 VAL B 19 0 SHEET 2 AA3 4 LEU B 7 LYS B 10 -1 N LEU B 7 O VAL B 19 SHEET 3 AA3 4 GLU B 55 HIS B 59 -1 O HIS B 59 N LEU B 8 SHEET 4 AA3 4 VAL B 47 ARG B 49 -1 N VAL B 48 O LEU B 56 SHEET 1 AA4 2 VAL B 26 HIS B 28 0 SHEET 2 AA4 2 SER B 33 PRO B 35 -1 O VAL B 34 N PHE B 27 SHEET 1 AA514 VAL B 147 LEU B 151 0 SHEET 2 AA514 LEU B 120 GLU B 125 1 N SER B 123 O HIS B 150 SHEET 3 AA514 ARG B 96 ALA B 100 1 N VAL B 97 O LEU B 120 SHEET 4 AA514 TYR B 164 LEU B 169 1 O ASP B 165 N ARG B 96 SHEET 5 AA514 LEU B 185 LEU B 195 1 O VAL B 192 N LEU B 169 SHEET 6 AA514 PHE B 245 ARG B 251 -1 O PHE B 245 N LEU B 195 SHEET 7 AA514 PHE B 213 ARG B 229 -1 N ARG B 214 O ARG B 250 SHEET 8 AA514 PHE D 213 ARG D 229 -1 O GLY D 222 N GLY B 222 SHEET 9 AA514 PHE D 245 ARG D 251 -1 O ARG D 250 N ARG D 214 SHEET 10 AA514 LEU D 185 LEU D 195 -1 N LEU D 195 O PHE D 245 SHEET 11 AA514 TYR D 164 LEU D 169 1 N TYR D 164 O LYS D 186 SHEET 12 AA514 ARG D 96 ALA D 100 1 N LEU D 98 O ALA D 168 SHEET 13 AA514 LEU D 120 TYR D 124 1 O TYR D 124 N GLU D 99 SHEET 14 AA514 VAL D 147 HIS D 150 1 O ARG D 148 N VAL D 121 SHEET 1 AA6 4 VAL B 232 PRO B 235 0 SHEET 2 AA6 4 PHE B 213 ARG B 229 -1 N GLU B 227 O HIS B 234 SHEET 3 AA6 4 PHE D 213 ARG D 229 -1 O GLY D 222 N GLY B 222 SHEET 4 AA6 4 VAL D 232 PRO D 235 -1 O HIS D 234 N GLU D 227 SHEET 1 AA7 2 GLN B 238 GLN B 239 0 SHEET 2 AA7 2 GLN C 239 VAL C 240 -1 N GLN C 239 O GLN B 239 SHEET 1 AA8 2 LEU C 7 LEU C 8 0 SHEET 2 AA8 2 LEU C 18 VAL C 19 -1 O VAL C 19 N LEU C 7 CISPEP 1 THR A 75 PRO A 76 0 -4.30 CISPEP 2 ALA A 100 GLY A 101 0 -11.89 CISPEP 3 GLY A 103 SER A 104 0 -4.56 CISPEP 4 LEU A 230 PRO A 231 0 1.92 CISPEP 5 LEU B 52 GLY B 53 0 -11.26 CISPEP 6 LEU B 230 PRO B 231 0 11.53 CISPEP 7 SER C 73 ALA C 74 0 -15.21 CISPEP 8 ALA C 100 GLY C 101 0 -28.60 CISPEP 9 THR C 102 GLY C 103 0 1.35 CISPEP 10 LEU C 230 PRO C 231 0 6.38 CISPEP 11 LYS C 253 GLY C 254 0 9.01 CISPEP 12 ALA D 100 GLY D 101 0 3.72 CISPEP 13 SER D 104 GLY D 105 0 -3.05 CISPEP 14 LEU D 230 PRO D 231 0 7.49 SITE 1 AC1 10 GLU B 99 GLY B 101 THR B 102 SER B 104 SITE 2 AC1 10 GLY B 105 LEU B 107 THR B 108 GLU B 125 SITE 3 AC1 10 ALA B 134 HOH B 402 SITE 1 AC2 4 ARG B 127 PRO B 128 HIS B 129 HIS C 211 SITE 1 AC3 9 ARG D 72 GLU D 99 GLY D 101 THR D 102 SITE 2 AC3 9 SER D 104 GLY D 105 GLY D 106 LEU D 107 SITE 3 AC3 9 THR D 108 CRYST1 110.429 110.429 306.441 90.00 90.00 120.00 P 61 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009056 0.005228 0.000000 0.00000 SCALE2 0.000000 0.010456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003263 0.00000