HEADER OXIDOREDUCTASE 14-JUN-15 5C1K OBSLTE 25-NOV-15 5C1K 5ENV TITLE ASYMMETRY OF YEAST ALCOHOL DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALCOHOL DEHYDROGENASE I,YADH-1; COMPND 5 EC: 1.1.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: ADH1, ADC1, YOL086C, O0947; SOURCE 8 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 559292; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ATC 204508; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: YEP13 KEYWDS TETRAMER ROSSMANN NAD ALCOHOL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.V.PLAPP,H.A.CHARLIER JR.,S.RAMASWAMY REVDAT 2 25-NOV-15 5C1K 1 OBSLTE REVDAT 1 01-JUL-15 5C1K 0 JRNL AUTH B.V.PLAPP,H.A.CHARLIER JR.,S.RAMASWAMY JRNL TITL ASYMMETRY OF YEAST ALCOHOL DEHYDROGENASE PROVIDES TWO JRNL TITL 2 STRUCTURES FOR THE CATALYTIC MECHANISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 15427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 733 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 937 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.22000 REMARK 3 B22 (A**2) : -6.22000 REMARK 3 B33 (A**2) : 12.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.295 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.521 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5383 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5105 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7313 ; 1.756 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11777 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 692 ; 7.357 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;41.146 ;24.752 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 861 ;18.104 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.755 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 815 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6096 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1170 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2774 ; 0.727 ; 2.270 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2773 ; 0.727 ; 2.270 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3464 ; 1.303 ; 3.403 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3465 ; 1.303 ; 3.403 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2608 ; 0.572 ; 2.404 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2608 ; 0.572 ; 2.404 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3850 ; 1.049 ; 3.582 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5886 ; 2.807 ;18.106 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5887 ; 2.807 ;18.104 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.713 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, -K, L REMARK 3 TWIN FRACTION : 0.287 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 154 REMARK 3 RESIDUE RANGE : A 294 A 347 REMARK 3 RESIDUE RANGE : A 401 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): -37.9530 33.5560 -13.2410 REMARK 3 T TENSOR REMARK 3 T11: 0.3906 T22: 0.3019 REMARK 3 T33: 0.3848 T12: -0.0767 REMARK 3 T13: 0.0044 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 2.0420 L22: 2.5656 REMARK 3 L33: 1.4647 L12: 0.8396 REMARK 3 L13: -0.3011 L23: 0.3738 REMARK 3 S TENSOR REMARK 3 S11: -0.0684 S12: 0.3250 S13: -0.7007 REMARK 3 S21: -0.4155 S22: 0.1266 S23: -0.2021 REMARK 3 S31: 0.3671 S32: -0.0119 S33: -0.0583 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 155 A 293 REMARK 3 RESIDUE RANGE : A 403 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): -50.8970 56.2580 -16.3160 REMARK 3 T TENSOR REMARK 3 T11: 0.2721 T22: 0.2647 REMARK 3 T33: 0.0882 T12: -0.1271 REMARK 3 T13: -0.0634 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.2307 L22: 2.3357 REMARK 3 L33: 1.7585 L12: 0.7427 REMARK 3 L13: -0.4787 L23: -0.0986 REMARK 3 S TENSOR REMARK 3 S11: -0.2069 S12: 0.4064 S13: -0.0548 REMARK 3 S21: -0.5497 S22: 0.1493 S23: 0.3782 REMARK 3 S31: 0.0790 S32: -0.1755 S33: 0.0576 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 154 REMARK 3 RESIDUE RANGE : B 294 B 347 REMARK 3 RESIDUE RANGE : B 401 B 402 REMARK 3 ORIGIN FOR THE GROUP (A): -38.6300 93.7660 -14.3510 REMARK 3 T TENSOR REMARK 3 T11: 0.5553 T22: 0.5377 REMARK 3 T33: 0.4125 T12: -0.0269 REMARK 3 T13: -0.0040 T23: 0.1240 REMARK 3 L TENSOR REMARK 3 L11: 3.2585 L22: 3.4985 REMARK 3 L33: 0.9480 L12: 0.9467 REMARK 3 L13: 0.6419 L23: -0.6071 REMARK 3 S TENSOR REMARK 3 S11: -0.2078 S12: 0.9474 S13: 0.6782 REMARK 3 S21: -0.8391 S22: 0.1748 S23: 0.2085 REMARK 3 S31: -0.2084 S32: -0.0270 S33: 0.0331 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 155 B 293 REMARK 3 RESIDUE RANGE : B 403 B 403 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9570 69.5290 -18.6570 REMARK 3 T TENSOR REMARK 3 T11: 0.3764 T22: 0.3666 REMARK 3 T33: 0.1371 T12: -0.1304 REMARK 3 T13: 0.0786 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 3.0526 L22: 2.7384 REMARK 3 L33: 1.7895 L12: 1.1662 REMARK 3 L13: -0.1247 L23: 0.9828 REMARK 3 S TENSOR REMARK 3 S11: -0.2430 S12: 0.6932 S13: 0.2175 REMARK 3 S21: -0.7245 S22: 0.2394 S23: -0.2965 REMARK 3 S31: -0.1488 S32: 0.1639 S33: 0.0035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5C1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.39 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15427 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.32600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4W6Z REMARK 200 REMARK 200 REMARK: HEAXOGONAL PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM N REMARK 280 -TRIS(HYDROXYMETHYL)METHYL-3-AMINOPROPANESULFONATE, 0.25 MM EDTA, REMARK 280 2 MM NAD+, 0.2 M 2,2,2-TRIFLUOROETHANOL, 1 MM YBCL3, 16 % REMARK 280 POLYETHYETHYLENE GLYCOL 5000 MONOMETHYL ETHER, PH 8.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -224.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 3 -178.42 -58.07 REMARK 500 GLU A 4 -52.17 -123.14 REMARK 500 SER A 14 130.67 -36.40 REMARK 500 ASP A 22 131.99 -37.82 REMARK 500 HIS A 66 41.42 -156.42 REMARK 500 LYS A 80 -71.22 -111.11 REMARK 500 ALA A 99 -2.26 -163.36 REMARK 500 TYR A 119 -61.89 -150.24 REMARK 500 PHE A 125 44.33 -86.40 REMARK 500 CYS A 153 -48.16 -143.15 REMARK 500 ASN A 262 19.21 59.19 REMARK 500 VAL A 268 -57.10 -138.23 REMARK 500 VAL A 295 -155.90 44.26 REMARK 500 HIS B 15 72.84 63.04 REMARK 500 LEU B 18 69.10 -117.97 REMARK 500 HIS B 66 27.97 -151.23 REMARK 500 ALA B 99 27.76 -158.46 REMARK 500 GLU B 101 -52.41 -18.39 REMARK 500 ASN B 107 61.65 -113.10 REMARK 500 TYR B 119 -77.73 -167.39 REMARK 500 CYS B 153 -73.69 -134.87 REMARK 500 ASN B 166 68.52 73.43 REMARK 500 SER B 212 -8.15 -58.15 REMARK 500 VAL B 268 -50.30 -121.77 REMARK 500 TYR B 294 -149.37 -87.34 REMARK 500 VAL B 338 -39.11 -157.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 43 SG REMARK 620 2 HIS A 66 NE2 129.6 REMARK 620 3 CYS A 153 SG 141.6 80.9 REMARK 620 4 ETF A 404 O 128.7 74.7 76.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 100.1 REMARK 620 3 CYS A 103 SG 118.5 108.3 REMARK 620 4 CYS A 111 SG 105.3 118.1 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 43 SG REMARK 620 2 HIS B 66 NE2 97.3 REMARK 620 3 GLU B 67 OE2 94.2 89.2 REMARK 620 4 CYS B 153 SG 146.6 82.7 119.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 100 SG 108.7 REMARK 620 3 CYS B 103 SG 113.3 104.5 REMARK 620 4 CYS B 111 SG 117.1 109.8 102.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ETF A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ETF B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4W6Z RELATED DB: PDB REMARK 900 DIFFERENT SPACE GROUP AND LIGAND BINDING DBREF 5C1K A 1 347 UNP P00330 ADH1_YEAST 2 348 DBREF 5C1K B 1 347 UNP P00330 ADH1_YEAST 2 348 SEQRES 1 A 347 SER ILE PRO GLU THR GLN LYS GLY VAL ILE PHE TYR GLU SEQRES 2 A 347 SER HIS GLY LYS LEU GLU TYR LYS ASP ILE PRO VAL PRO SEQRES 3 A 347 LYS PRO LYS ALA ASN GLU LEU LEU ILE ASN VAL LYS TYR SEQRES 4 A 347 SER GLY VAL CYS HIS THR ASP LEU HIS ALA TRP HIS GLY SEQRES 5 A 347 ASP TRP PRO LEU PRO VAL LYS LEU PRO LEU VAL GLY GLY SEQRES 6 A 347 HIS GLU GLY ALA GLY VAL VAL VAL GLY MET GLY GLU ASN SEQRES 7 A 347 VAL LYS GLY TRP LYS ILE GLY ASP TYR ALA GLY ILE LYS SEQRES 8 A 347 TRP LEU ASN GLY SER CYS MET ALA CYS GLU TYR CYS GLU SEQRES 9 A 347 LEU GLY ASN GLU SER ASN CYS PRO HIS ALA ASP LEU SER SEQRES 10 A 347 GLY TYR THR HIS ASP GLY SER PHE GLN GLN TYR ALA THR SEQRES 11 A 347 ALA ASP ALA VAL GLN ALA ALA HIS ILE PRO GLN GLY THR SEQRES 12 A 347 ASP LEU ALA GLN VAL ALA PRO ILE LEU CYS ALA GLY ILE SEQRES 13 A 347 THR VAL TYR LYS ALA LEU LYS SER ALA ASN LEU MET ALA SEQRES 14 A 347 GLY HIS TRP VAL ALA ILE SER GLY ALA ALA GLY GLY LEU SEQRES 15 A 347 GLY SER LEU ALA VAL GLN TYR ALA LYS ALA MET GLY TYR SEQRES 16 A 347 ARG VAL LEU GLY ILE ASP GLY GLY GLU GLY LYS GLU GLU SEQRES 17 A 347 LEU PHE ARG SER ILE GLY GLY GLU VAL PHE ILE ASP PHE SEQRES 18 A 347 THR LYS GLU LYS ASP ILE VAL GLY ALA VAL LEU LYS ALA SEQRES 19 A 347 THR ASP GLY GLY ALA HIS GLY VAL ILE ASN VAL SER VAL SEQRES 20 A 347 SER GLU ALA ALA ILE GLU ALA SER THR ARG TYR VAL ARG SEQRES 21 A 347 ALA ASN GLY THR THR VAL LEU VAL GLY MET PRO ALA GLY SEQRES 22 A 347 ALA LYS CYS CYS SER ASP VAL PHE ASN GLN VAL VAL LYS SEQRES 23 A 347 SER ILE SER ILE VAL GLY SER TYR VAL GLY ASN ARG ALA SEQRES 24 A 347 ASP THR ARG GLU ALA LEU ASP PHE PHE ALA ARG GLY LEU SEQRES 25 A 347 VAL LYS SER PRO ILE LYS VAL VAL GLY LEU SER THR LEU SEQRES 26 A 347 PRO GLU ILE TYR GLU LYS MET GLU LYS GLY GLN ILE VAL SEQRES 27 A 347 GLY ARG TYR VAL VAL ASP THR SER LYS SEQRES 1 B 347 SER ILE PRO GLU THR GLN LYS GLY VAL ILE PHE TYR GLU SEQRES 2 B 347 SER HIS GLY LYS LEU GLU TYR LYS ASP ILE PRO VAL PRO SEQRES 3 B 347 LYS PRO LYS ALA ASN GLU LEU LEU ILE ASN VAL LYS TYR SEQRES 4 B 347 SER GLY VAL CYS HIS THR ASP LEU HIS ALA TRP HIS GLY SEQRES 5 B 347 ASP TRP PRO LEU PRO VAL LYS LEU PRO LEU VAL GLY GLY SEQRES 6 B 347 HIS GLU GLY ALA GLY VAL VAL VAL GLY MET GLY GLU ASN SEQRES 7 B 347 VAL LYS GLY TRP LYS ILE GLY ASP TYR ALA GLY ILE LYS SEQRES 8 B 347 TRP LEU ASN GLY SER CYS MET ALA CYS GLU TYR CYS GLU SEQRES 9 B 347 LEU GLY ASN GLU SER ASN CYS PRO HIS ALA ASP LEU SER SEQRES 10 B 347 GLY TYR THR HIS ASP GLY SER PHE GLN GLN TYR ALA THR SEQRES 11 B 347 ALA ASP ALA VAL GLN ALA ALA HIS ILE PRO GLN GLY THR SEQRES 12 B 347 ASP LEU ALA GLN VAL ALA PRO ILE LEU CYS ALA GLY ILE SEQRES 13 B 347 THR VAL TYR LYS ALA LEU LYS SER ALA ASN LEU MET ALA SEQRES 14 B 347 GLY HIS TRP VAL ALA ILE SER GLY ALA ALA GLY GLY LEU SEQRES 15 B 347 GLY SER LEU ALA VAL GLN TYR ALA LYS ALA MET GLY TYR SEQRES 16 B 347 ARG VAL LEU GLY ILE ASP GLY GLY GLU GLY LYS GLU GLU SEQRES 17 B 347 LEU PHE ARG SER ILE GLY GLY GLU VAL PHE ILE ASP PHE SEQRES 18 B 347 THR LYS GLU LYS ASP ILE VAL GLY ALA VAL LEU LYS ALA SEQRES 19 B 347 THR ASP GLY GLY ALA HIS GLY VAL ILE ASN VAL SER VAL SEQRES 20 B 347 SER GLU ALA ALA ILE GLU ALA SER THR ARG TYR VAL ARG SEQRES 21 B 347 ALA ASN GLY THR THR VAL LEU VAL GLY MET PRO ALA GLY SEQRES 22 B 347 ALA LYS CYS CYS SER ASP VAL PHE ASN GLN VAL VAL LYS SEQRES 23 B 347 SER ILE SER ILE VAL GLY SER TYR VAL GLY ASN ARG ALA SEQRES 24 B 347 ASP THR ARG GLU ALA LEU ASP PHE PHE ALA ARG GLY LEU SEQRES 25 B 347 VAL LYS SER PRO ILE LYS VAL VAL GLY LEU SER THR LEU SEQRES 26 B 347 PRO GLU ILE TYR GLU LYS MET GLU LYS GLY GLN ILE VAL SEQRES 27 B 347 GLY ARG TYR VAL VAL ASP THR SER LYS HET ZN A 401 1 HET ZN A 402 1 HET NAD A 403 44 HET ETF A 404 6 HET ZN B 401 1 HET ZN B 402 1 HET NAD B 403 44 HET ETF B 404 6 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ETF TRIFLUOROETHANOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 6 ETF 2(C2 H3 F3 O) FORMUL 11 HOH *21(H2 O) HELIX 1 AA1 CYS A 43 HIS A 51 1 9 HELIX 2 AA2 CYS A 100 LEU A 105 1 6 HELIX 3 AA3 GLY A 106 CYS A 111 5 6 HELIX 4 AA4 ASP A 144 ALA A 149 1 6 HELIX 5 AA5 PRO A 150 LEU A 152 5 3 HELIX 6 AA6 CYS A 153 ALA A 165 1 13 HELIX 7 AA7 GLY A 180 MET A 193 1 14 HELIX 8 AA8 GLY A 205 ILE A 213 1 9 HELIX 9 AA9 ASP A 226 ASP A 236 1 11 HELIX 10 AB1 SER A 248 TYR A 258 1 11 HELIX 11 AB2 VAL A 280 SER A 287 1 8 HELIX 12 AB3 ASN A 297 ARG A 310 1 14 HELIX 13 AB4 THR A 324 GLU A 333 1 10 HELIX 14 AB5 HIS B 44 GLY B 52 1 9 HELIX 15 AB6 TYR B 102 GLY B 106 5 5 HELIX 16 AB7 ASP B 144 ALA B 149 1 6 HELIX 17 AB8 CYS B 153 ASN B 166 1 14 HELIX 18 AB9 GLY B 180 MET B 193 1 14 HELIX 19 AC1 GLY B 205 SER B 212 1 8 HELIX 20 AC2 ASP B 226 ASP B 236 1 11 HELIX 21 AC3 SER B 248 TYR B 258 1 11 HELIX 22 AC4 VAL B 280 LYS B 286 1 7 HELIX 23 AC5 ASN B 297 ARG B 310 1 14 HELIX 24 AC6 THR B 324 LYS B 334 1 11 SHEET 1 AA1 2 THR A 5 ILE A 10 0 SHEET 2 AA1 2 GLU A 19 PRO A 24 -1 O GLU A 19 N ILE A 10 SHEET 1 AA2 5 TYR A 128 ASP A 132 0 SHEET 2 AA2 5 GLU A 32 GLY A 41 -1 N LEU A 33 O ALA A 131 SHEET 3 AA2 5 GLY A 68 MET A 75 -1 O ALA A 69 N TYR A 39 SHEET 4 AA2 5 TYR A 87 ILE A 90 -1 O ILE A 90 N GLY A 68 SHEET 5 AA2 5 ALA A 137 ILE A 139 -1 O ILE A 139 N TYR A 87 SHEET 1 AA3 4 TYR A 128 ASP A 132 0 SHEET 2 AA3 4 GLU A 32 GLY A 41 -1 N LEU A 33 O ALA A 131 SHEET 3 AA3 4 ARG A 340 ASP A 344 -1 O VAL A 343 N SER A 40 SHEET 4 AA3 4 ILE A 317 GLY A 321 1 N VAL A 320 O ASP A 344 SHEET 1 AA4 2 LEU A 93 GLY A 95 0 SHEET 2 AA4 2 ASP A 115 LEU A 116 -1 O ASP A 115 N GLY A 95 SHEET 1 AA512 VAL A 217 ASP A 220 0 SHEET 2 AA512 ARG A 196 ASP A 201 1 N GLY A 199 O VAL A 217 SHEET 3 AA512 TRP A 172 SER A 176 1 N VAL A 173 O LEU A 198 SHEET 4 AA512 ALA A 239 ASN A 244 1 O ILE A 243 N ALA A 174 SHEET 5 AA512 VAL A 259 LEU A 267 1 O ARG A 260 N ALA A 239 SHEET 6 AA512 SER A 289 GLY A 292 1 O VAL A 291 N LEU A 267 SHEET 7 AA512 SER B 289 GLY B 292 -1 O ILE B 290 N ILE A 290 SHEET 8 AA512 VAL B 259 LEU B 267 1 N LEU B 267 O VAL B 291 SHEET 9 AA512 ALA B 239 ASN B 244 1 N ALA B 239 O ARG B 260 SHEET 10 AA512 TRP B 172 SER B 176 1 N ALA B 174 O ILE B 243 SHEET 11 AA512 ARG B 196 ASP B 201 1 O ARG B 196 N VAL B 173 SHEET 12 AA512 VAL B 217 ASP B 220 1 O VAL B 217 N GLY B 199 SHEET 1 AA6 2 LYS A 275 ASP A 279 0 SHEET 2 AA6 2 LYS B 275 ASP B 279 -1 O SER B 278 N CYS A 276 SHEET 1 AA7 2 THR B 5 VAL B 9 0 SHEET 2 AA7 2 TYR B 20 PRO B 24 -1 O ILE B 23 N GLN B 6 SHEET 1 AA8 5 TYR B 128 ASP B 132 0 SHEET 2 AA8 5 GLU B 32 GLY B 41 -1 N ILE B 35 O ALA B 129 SHEET 3 AA8 5 GLY B 68 MET B 75 -1 O ALA B 69 N TYR B 39 SHEET 4 AA8 5 TYR B 87 ILE B 90 -1 O ILE B 90 N GLY B 68 SHEET 5 AA8 5 ALA B 137 ILE B 139 -1 O ILE B 139 N TYR B 87 SHEET 1 AA9 4 TYR B 128 ASP B 132 0 SHEET 2 AA9 4 GLU B 32 GLY B 41 -1 N ILE B 35 O ALA B 129 SHEET 3 AA9 4 ARG B 340 ASP B 344 -1 O VAL B 343 N SER B 40 SHEET 4 AA9 4 ILE B 317 GLY B 321 1 N VAL B 320 O ASP B 344 SHEET 1 AB1 2 LEU B 93 GLY B 95 0 SHEET 2 AB1 2 ASP B 115 LEU B 116 -1 O ASP B 115 N GLY B 95 SSBOND 1 CYS A 277 CYS B 277 1555 1555 2.03 LINK SG CYS A 43 ZN ZN A 401 1555 1555 2.45 LINK NE2 HIS A 66 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 97 ZN ZN A 402 1555 1555 2.31 LINK SG CYS A 100 ZN ZN A 402 1555 1555 2.38 LINK SG CYS A 103 ZN ZN A 402 1555 1555 2.19 LINK SG CYS A 111 ZN ZN A 402 1555 1555 2.44 LINK SG CYS A 153 ZN ZN A 401 1555 1555 2.60 LINK SG CYS B 43 ZN ZN B 401 1555 1555 2.08 LINK NE2 HIS B 66 ZN ZN B 401 1555 1555 2.45 LINK OE2 GLU B 67 ZN ZN B 401 1555 1555 2.63 LINK SG CYS B 97 ZN ZN B 402 1555 1555 2.24 LINK SG CYS B 100 ZN ZN B 402 1555 1555 2.64 LINK SG CYS B 103 ZN ZN B 402 1555 1555 2.15 LINK SG CYS B 111 ZN ZN B 402 1555 1555 2.29 LINK SG CYS B 153 ZN ZN B 401 1555 1555 2.52 LINK ZN ZN A 401 O ETF A 404 1555 1555 2.10 CISPEP 1 LEU A 60 PRO A 61 0 -1.54 CISPEP 2 LEU B 60 PRO B 61 0 -3.18 SITE 1 AC1 6 CYS A 43 THR A 45 HIS A 66 CYS A 153 SITE 2 AC1 6 NAD A 403 ETF A 404 SITE 1 AC2 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC3 27 HIS A 44 THR A 45 HIS A 48 TRP A 54 SITE 2 AC3 27 THR A 157 SER A 176 GLY A 177 ALA A 179 SITE 3 AC3 27 GLY A 180 GLY A 181 LEU A 182 ILE A 200 SITE 4 AC3 27 ASP A 201 LYS A 206 PHE A 221 SER A 246 SITE 5 AC3 27 VAL A 268 GLY A 269 MET A 270 SER A 293 SITE 6 AC3 27 TYR A 294 VAL A 295 ARG A 340 ZN A 401 SITE 7 AC3 27 ETF A 404 HOH A 509 VAL B 284 SITE 1 AC4 9 THR A 45 HIS A 66 TRP A 92 CYS A 153 SITE 2 AC4 9 MET A 270 TYR A 294 VAL A 295 ZN A 401 SITE 3 AC4 9 NAD A 403 SITE 1 AC5 5 CYS B 43 HIS B 66 GLU B 67 CYS B 153 SITE 2 AC5 5 ETF B 404 SITE 1 AC6 4 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 1 AC7 20 VAL A 284 HIS B 44 GLY B 177 GLY B 180 SITE 2 AC7 20 GLY B 181 LEU B 182 ILE B 200 ASP B 201 SITE 3 AC7 20 LYS B 206 PHE B 221 VAL B 245 SER B 246 SITE 4 AC7 20 VAL B 247 ALA B 251 VAL B 268 MET B 270 SITE 5 AC7 20 SER B 293 TYR B 294 VAL B 295 ETF B 404 SITE 1 AC8 7 THR B 45 HIS B 66 TRP B 92 CYS B 153 SITE 2 AC8 7 VAL B 295 ZN B 401 NAD B 403 CRYST1 146.256 146.256 65.980 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006837 0.003948 0.000000 0.00000 SCALE2 0.000000 0.007895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015156 0.00000