HEADER TRANSFERASE 15-JUN-15 5C1R TITLE STEREOISOMER OF PRPP BOUND IN THE ACTIVE SITE OF MYCOBACTERIUM TITLE 2 TUBERCULOSIS ANTHRANILATE PHOSPHORIBOSYL (ANPRT; TRPD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: TRPD, RV2192C, MTCY190.03C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PGROESL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS STEREOISOMER OF PRPP, PHOSPHORIBOYSL PYROPHOSPHATE, TB STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, TBSGC, MAGNESIUM BINDING, TRANSFERASE, PSI-2, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE EXPDTA X-RAY DIFFRACTION AUTHOR G.L.EVANS,E.N.BAKER,J.S.LOTT,TB STRUCTURAL GENOMICS CONSORTIUM AUTHOR 2 (TBSGC) REVDAT 5 27-SEP-23 5C1R 1 HETSYN REVDAT 4 29-JUL-20 5C1R 1 REMARK LINK SITE ATOM REVDAT 3 01-JAN-20 5C1R 1 REMARK REVDAT 2 20-SEP-17 5C1R 1 REMARK REVDAT 1 20-JUL-16 5C1R 0 JRNL AUTH G.L.EVANS,E.N.BAKER,J.S.LOTT JRNL TITL BINDING AND MIMICKING OF THE PHOSPHATE-RICH SUBSTRATE, PRPP. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 61653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1044 - 4.4439 1.00 4085 246 0.1576 0.1671 REMARK 3 2 4.4439 - 3.5276 1.00 4030 235 0.1526 0.1878 REMARK 3 3 3.5276 - 3.0818 1.00 4031 207 0.1822 0.2084 REMARK 3 4 3.0818 - 2.8001 1.00 4013 215 0.1816 0.2106 REMARK 3 5 2.8001 - 2.5994 1.00 3988 253 0.1830 0.2060 REMARK 3 6 2.5994 - 2.4461 1.00 4006 191 0.1741 0.2291 REMARK 3 7 2.4461 - 2.3236 1.00 4056 188 0.1749 0.2402 REMARK 3 8 2.3236 - 2.2225 1.00 3995 217 0.1681 0.2219 REMARK 3 9 2.2225 - 2.1369 1.00 3998 218 0.1708 0.2165 REMARK 3 10 2.1369 - 2.0632 1.00 4014 207 0.1708 0.2305 REMARK 3 11 2.0632 - 1.9987 1.00 3993 224 0.1785 0.2261 REMARK 3 12 1.9987 - 1.9415 1.00 4015 180 0.1733 0.2160 REMARK 3 13 1.9415 - 1.8904 0.98 3938 195 0.1825 0.2468 REMARK 3 14 1.8904 - 1.8443 0.93 3710 164 0.2069 0.2543 REMARK 3 15 1.8443 - 1.8024 0.67 2664 177 0.2362 0.2794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5194 REMARK 3 ANGLE : 1.159 7107 REMARK 3 CHIRALITY : 0.043 822 REMARK 3 PLANARITY : 0.006 944 REMARK 3 DIHEDRAL : 11.615 1809 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C1R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61658 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: PDB ENTRY 3QR9 CHAIN A REMARK 200 REMARK 200 REMARK: SQUARE-DIAMOND SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M IMIDAZOLE-MALATE, 15 % PEG-4000, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.15050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.24500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.15050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.24500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 LYS A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 VAL A 24 REMARK 465 SER A 332 REMARK 465 ARG A 333 REMARK 465 ILE A 370 REMARK 465 LEU A 371 REMARK 465 GLU A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 LYS B 18 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 SER B 332 REMARK 465 LEU B 371 REMARK 465 GLU B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 100 CG OD1 OD2 REMARK 470 LEU A 144 CG CD1 CD2 REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 SER A 331 OG REMARK 470 VAL B 24 CG1 CG2 REMARK 470 LEU B 144 CG CD1 CD2 REMARK 470 ARG B 333 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 335 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 73 104.46 93.35 REMARK 500 ASP A 159 40.18 -105.22 REMARK 500 ASP A 251 49.95 -91.07 REMARK 500 THR A 257 -163.68 -170.68 REMARK 500 ALA B 73 100.99 95.97 REMARK 500 ASP B 251 48.65 -92.34 REMARK 500 THR B 257 -162.09 -176.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 111 OD1 REMARK 620 2 VAL A 113 O 92.3 REMARK 620 3 HOH A 505 O 84.8 93.2 REMARK 620 4 HOH A 511 O 88.0 92.1 171.3 REMARK 620 5 HOH A 601 O 170.5 81.1 88.7 99.0 REMARK 620 6 HOH A 639 O 85.5 176.2 89.8 84.7 101.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 119 OG REMARK 620 2 GLU A 252 OE1 86.9 REMARK 620 3 51N A 403 O19 96.0 86.7 REMARK 620 4 51N A 403 O21 90.5 177.3 92.8 REMARK 620 5 HOH A 524 O 167.6 91.3 96.2 91.4 REMARK 620 6 HOH A 594 O 80.9 83.6 170.0 96.7 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 111 OD1 REMARK 620 2 VAL B 113 O 80.1 REMARK 620 3 HOH B 515 O 91.2 72.2 REMARK 620 4 HOH B 559 O 77.8 94.8 164.3 REMARK 620 5 HOH B 636 O 91.9 166.5 97.3 94.1 REMARK 620 6 HOH B 709 O 157.4 85.9 67.6 121.3 98.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 119 OG REMARK 620 2 GLU B 252 OE2 88.6 REMARK 620 3 51N B 403 O21 92.0 175.4 REMARK 620 4 51N B 403 O19 95.5 87.1 88.3 REMARK 620 5 HOH B 534 O 171.8 89.5 90.6 92.3 REMARK 620 6 HOH B 600 O 81.2 87.1 97.5 173.4 90.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QR9 RELATED DB: PDB REMARK 900 3QR9 CONTAINS THE SAME PROTEIN WITH NO LIGANDS BOUND AND WAS USED REMARK 900 IN MR FOR THIS STRUCTURE REMARK 900 RELATED ID: 1ZVW RELATED DB: PDB REMARK 900 1ZVW CONTAINS THE SAME PROTEIN WITH RELATED LIGAND, PRPP, BUT REMARK 900 CRYSTALLIZED IN DIFFERENT CONDITION WITH DIFFERENT UNIT CELL AND REMARK 900 SPACE GROUP REMARK 900 RELATED ID: 3BYT RELATED DB: PDB REMARK 900 3BYT CONTAINS THE SAME PROTEIN WITH RELATED LIGAND, PRPP, REMARK 900 CRYSTALLIZED IN SAME CONDITION, BUT WITH DIFFERENT UNIT CELL AND REMARK 900 SPACE GROUP DBREF 5C1R A 2 370 UNP P9WFX5 TRPD_MYCTU 2 370 DBREF 5C1R B 2 370 UNP P9WFX5 TRPD_MYCTU 2 370 SEQADV 5C1R MET A 0 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R VAL A 1 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R LEU A 371 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R GLU A 372 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS A 373 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS A 374 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS A 375 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS A 376 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS A 377 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS A 378 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R MET B 0 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R VAL B 1 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R LEU B 371 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R GLU B 372 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS B 373 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS B 374 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS B 375 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS B 376 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS B 377 UNP P9WFX5 EXPRESSION TAG SEQADV 5C1R HIS B 378 UNP P9WFX5 EXPRESSION TAG SEQRES 1 A 379 MET VAL ALA LEU SER ALA GLU GLY SER SER GLY GLY SER SEQRES 2 A 379 ARG GLY GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SEQRES 3 A 379 SER TRP PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG SEQRES 4 A 379 ASP LEU ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN SEQRES 5 A 379 ILE MET THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA SEQRES 6 A 379 PHE ALA VAL ALA MET THR MET LYS ALA PRO THR ALA ASP SEQRES 7 A 379 GLU VAL GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA SEQRES 8 A 379 HIS PRO LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL SEQRES 9 A 379 ASP VAL VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL SEQRES 10 A 379 ASN LEU SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA SEQRES 11 A 379 GLY VAL PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SEQRES 12 A 379 SER LEU SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY SEQRES 13 A 379 VAL ARG ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER SEQRES 14 A 379 LEU ALA GLU VAL GLY ILE GLY PHE CYS PHE ALA PRO ARG SEQRES 15 A 379 PHE HIS PRO SER TYR ARG HIS ALA ALA ALA VAL ARG ARG SEQRES 16 A 379 GLU ILE GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO SEQRES 17 A 379 LEU THR ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY SEQRES 18 A 379 CYS ALA PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL SEQRES 19 A 379 PHE ALA ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY SEQRES 20 A 379 ASP ASP GLY LEU ASP GLU LEU THR THR THR THR THR SER SEQRES 21 A 379 THR ILE TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU SEQRES 22 A 379 THR PHE ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN SEQRES 23 A 379 LEU ASP GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA SEQRES 24 A 379 ALA ALA VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO SEQRES 25 A 379 VAL ARG ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE SEQRES 26 A 379 VAL ALA HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU SEQRES 27 A 379 PRO ALA TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA SEQRES 28 A 379 ILE ASP THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP SEQRES 29 A 379 VAL ARG PHE GLY ARG GLN ILE LEU GLU HIS HIS HIS HIS SEQRES 30 A 379 HIS HIS SEQRES 1 B 379 MET VAL ALA LEU SER ALA GLU GLY SER SER GLY GLY SER SEQRES 2 B 379 ARG GLY GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SEQRES 3 B 379 SER TRP PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG SEQRES 4 B 379 ASP LEU ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN SEQRES 5 B 379 ILE MET THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA SEQRES 6 B 379 PHE ALA VAL ALA MET THR MET LYS ALA PRO THR ALA ASP SEQRES 7 B 379 GLU VAL GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA SEQRES 8 B 379 HIS PRO LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL SEQRES 9 B 379 ASP VAL VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL SEQRES 10 B 379 ASN LEU SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA SEQRES 11 B 379 GLY VAL PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SEQRES 12 B 379 SER LEU SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY SEQRES 13 B 379 VAL ARG ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER SEQRES 14 B 379 LEU ALA GLU VAL GLY ILE GLY PHE CYS PHE ALA PRO ARG SEQRES 15 B 379 PHE HIS PRO SER TYR ARG HIS ALA ALA ALA VAL ARG ARG SEQRES 16 B 379 GLU ILE GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO SEQRES 17 B 379 LEU THR ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY SEQRES 18 B 379 CYS ALA PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL SEQRES 19 B 379 PHE ALA ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY SEQRES 20 B 379 ASP ASP GLY LEU ASP GLU LEU THR THR THR THR THR SER SEQRES 21 B 379 THR ILE TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU SEQRES 22 B 379 THR PHE ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN SEQRES 23 B 379 LEU ASP GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA SEQRES 24 B 379 ALA ALA VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO SEQRES 25 B 379 VAL ARG ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE SEQRES 26 B 379 VAL ALA HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU SEQRES 27 B 379 PRO ALA TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA SEQRES 28 B 379 ILE ASP THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP SEQRES 29 B 379 VAL ARG PHE GLY ARG GLN ILE LEU GLU HIS HIS HIS HIS SEQRES 30 B 379 HIS HIS HET MG A 401 1 HET MG A 402 1 HET 51N A 403 22 HET GOL A 404 6 HET MG B 401 1 HET MG B 402 1 HET 51N B 403 22 HETNAM MG MAGNESIUM ION HETNAM 51N 5-O-[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]-1-O- HETNAM 2 51N PHOSPHONO-ALPHA-D-RIBOFURANOSE HETNAM GOL GLYCEROL HETSYN 51N 1'-ALPHA-PHOSPHORIBOSYL-5'-PYROPHOSPHORIC ACID; 5-O- HETSYN 2 51N [(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]-1-O-PHOSPHONO- HETSYN 3 51N ALPHA-D-RIBOSE; 5-O-[(R)-HYDROXY(PHOSPHONOOXY) HETSYN 4 51N PHOSPHORYL]-1-O-PHOSPHONO-D-RIBOSE; 5-O-[(R)- HETSYN 5 51N HYDROXY(PHOSPHONOOXY)PHOSPHORYL]-1-O-PHOSPHONO-RIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 4(MG 2+) FORMUL 5 51N 2(C5 H13 O14 P3) FORMUL 6 GOL C3 H8 O3 FORMUL 10 HOH *500(H2 O) HELIX 1 AA1 SER A 26 ASP A 36 1 11 HELIX 2 AA2 GLY A 43 THR A 54 1 12 HELIX 3 AA3 ARG A 58 ALA A 73 1 16 HELIX 4 AA4 THR A 75 ALA A 90 1 16 HELIX 5 AA5 ASN A 117 ALA A 129 1 13 HELIX 6 AA6 GLY A 146 LEU A 154 1 9 HELIX 7 AA7 GLY A 161 VAL A 172 1 12 HELIX 8 AA8 ALA A 179 HIS A 183 1 5 HELIX 9 AA9 TYR A 186 GLY A 197 1 12 HELIX 10 AB1 THR A 200 THR A 209 5 10 HELIX 11 AB2 PHE A 223 ASP A 225 5 3 HELIX 12 AB3 LEU A 226 ARG A 237 1 12 HELIX 13 AB4 ASP A 275 GLY A 280 5 6 HELIX 14 AB5 GLN A 285 ALA A 290 5 6 HELIX 15 AB6 ASP A 293 GLY A 306 1 14 HELIX 16 AB7 GLY A 310 GLY A 329 1 20 HELIX 17 AB8 GLU A 335 THR A 353 1 19 HELIX 18 AB9 GLY A 354 GLN A 369 1 16 HELIX 19 AC1 SER B 26 ASP B 36 1 11 HELIX 20 AC2 GLY B 43 THR B 54 1 12 HELIX 21 AC3 ARG B 58 ALA B 73 1 16 HELIX 22 AC4 THR B 75 ALA B 90 1 16 HELIX 23 AC5 ASN B 117 ALA B 129 1 13 HELIX 24 AC6 GLY B 146 LEU B 154 1 9 HELIX 25 AC7 GLY B 161 GLY B 173 1 13 HELIX 26 AC8 ALA B 179 HIS B 183 1 5 HELIX 27 AC9 TYR B 186 GLY B 197 1 12 HELIX 28 AD1 THR B 200 ASN B 203 5 4 HELIX 29 AD2 LEU B 204 THR B 209 1 6 HELIX 30 AD3 PHE B 223 ASP B 225 5 3 HELIX 31 AD4 LEU B 226 ARG B 237 1 12 HELIX 32 AD5 ASP B 275 GLY B 280 5 6 HELIX 33 AD6 GLN B 285 ALA B 290 5 6 HELIX 34 AD7 ASP B 293 GLY B 306 1 14 HELIX 35 AD8 GLY B 310 GLY B 329 1 20 HELIX 36 AD9 GLU B 335 THR B 353 1 19 HELIX 37 AE1 GLY B 354 GLN B 369 1 16 SHEET 1 AA1 5 VAL A 103 GLY A 107 0 SHEET 2 AA1 5 ALA A 216 GLY A 220 1 O LEU A 218 N ASP A 104 SHEET 3 AA1 5 SER A 240 GLY A 246 1 O LEU A 242 N ILE A 219 SHEET 4 AA1 5 SER A 259 ALA A 265 -1 O TRP A 262 N VAL A 243 SHEET 5 AA1 5 SER A 268 PHE A 274 -1 O LEU A 272 N ILE A 261 SHEET 1 AA2 2 VAL A 133 GLY A 137 0 SHEET 2 AA2 2 ILE A 174 PHE A 178 1 O CYS A 177 N LYS A 135 SHEET 1 AA3 5 VAL B 103 GLY B 107 0 SHEET 2 AA3 5 ALA B 216 GLY B 220 1 O LEU B 218 N ASP B 104 SHEET 3 AA3 5 SER B 240 GLY B 246 1 O LEU B 242 N ILE B 219 SHEET 4 AA3 5 SER B 259 ALA B 265 -1 O VAL B 264 N VAL B 241 SHEET 5 AA3 5 SER B 268 PHE B 274 -1 O PHE B 274 N SER B 259 SHEET 1 AA4 2 VAL B 133 GLY B 137 0 SHEET 2 AA4 2 ILE B 174 PHE B 178 1 O CYS B 177 N LYS B 135 LINK OD1 ASP A 111 MG MG A 402 1555 1555 2.13 LINK O VAL A 113 MG MG A 402 1555 1555 2.11 LINK OG SER A 119 MG MG A 401 1555 1555 2.21 LINK OE1 GLU A 252 MG MG A 401 1555 1555 2.20 LINK MG MG A 401 O19 51N A 403 1555 1555 2.07 LINK MG MG A 401 O21 51N A 403 1555 1555 2.16 LINK MG MG A 401 O HOH A 524 1555 1555 2.07 LINK MG MG A 401 O HOH A 594 1555 1555 2.18 LINK MG MG A 402 O HOH A 505 1555 1555 2.13 LINK MG MG A 402 O HOH A 511 1555 1555 2.17 LINK MG MG A 402 O HOH A 601 1555 1555 2.18 LINK MG MG A 402 O HOH A 639 1555 1555 2.16 LINK OD1 ASP B 111 MG MG B 402 1555 1555 2.04 LINK O VAL B 113 MG MG B 402 1555 1555 2.34 LINK OG SER B 119 MG MG B 401 1555 1555 2.12 LINK OE2 GLU B 252 MG MG B 401 1555 1555 2.00 LINK MG MG B 401 O21 51N B 403 1555 1555 2.15 LINK MG MG B 401 O19 51N B 403 1555 1555 2.07 LINK MG MG B 401 O HOH B 534 1555 1555 2.17 LINK MG MG B 401 O HOH B 600 1555 1555 2.08 LINK MG MG B 402 O HOH B 515 1555 1555 2.19 LINK MG MG B 402 O HOH B 559 1555 1555 2.32 LINK MG MG B 402 O HOH B 636 1555 1555 2.19 LINK MG MG B 402 O HOH B 709 1555 1555 2.20 CRYST1 94.301 78.490 100.485 90.00 110.41 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010604 0.000000 0.003946 0.00000 SCALE2 0.000000 0.012740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010618 0.00000