HEADER HYDROLASE/HYDROLASE INHIBITOR 15-JUN-15 5C1U TITLE CRYSTAL STRUCTURE OF EV71 3C PROTEINASE IN COMPLEX WITH COMPOUND XB COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.22.28; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROVIRUS A71; SOURCE 3 ORGANISM_TAXID: 39054; SOURCE 4 STRAIN: E2004104-TW-CDC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROLASE, CYSTEINE PROTEINASE, INHIBITOR, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.ZHANG,G.HUANG,Q.CAI,C.ZHAO,H.REN,P.LI,N.LI,S.CHEN,J.LI,T.LIN REVDAT 5 06-NOV-24 5C1U 1 REMARK REVDAT 4 08-NOV-23 5C1U 1 REMARK REVDAT 3 02-SEP-20 5C1U 1 COMPND REMARK HETNAM FORMUL REVDAT 3 2 1 ATOM REVDAT 2 26-OCT-16 5C1U 1 JRNL REVDAT 1 01-JUN-16 5C1U 0 JRNL AUTH L.ZHANG,G.HUANG,Q.CAI,C.ZHAO,L.TANG,H.REN,P.LI,N.LI,J.HUANG, JRNL AUTH 2 X.CHEN,Y.GUAN,H.YOU,S.CHEN,J.LI,T.LIN JRNL TITL OPTIMIZE THE INTERACTIONS AT S4 WITH EFFICIENT INHIBITORS JRNL TITL 2 TARGETING 3C PROTEINASE FROM ENTEROVIRUS 71 JRNL REF J.MOL.RECOGNIT. V. 29 520 2016 JRNL REFN ISSN 0952-3499 JRNL PMID 27185390 JRNL DOI 10.1002/JMR.2551 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 50853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2584 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3521 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.383 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2957 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4007 ; 2.382 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.448 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;35.191 ;23.543 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;13.166 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.951 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.408 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2226 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 180 B 0 180 204 0.140 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 4 REMARK 4 5C1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50941 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4GHQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, 25% PEG4000, 0.8M LITHIUM REMARK 280 CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.77050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.70150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.10750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.70150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.77050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.10750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 181 REMARK 465 GLU A 182 REMARK 465 GLN A 183 REMARK 465 LEU A 184 REMARK 465 GLU A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 SER B 181 REMARK 465 GLU B 182 REMARK 465 GLN B 183 REMARK 465 LEU B 184 REMARK 465 GLU B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 312 O HOH B 410 1.45 REMARK 500 O HOH A 439 O HOH A 458 1.64 REMARK 500 NZ LYS B 52 O HOH B 301 1.95 REMARK 500 NZ LYS A 143 O HOH A 301 2.12 REMARK 500 O HOH A 414 O HOH A 425 2.13 REMARK 500 O HOH A 301 O HOH B 400 2.15 REMARK 500 O HOH A 416 O HOH A 420 2.19 REMARK 500 O HOH B 311 O HOH B 410 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 307 O HOH A 458 3544 1.51 REMARK 500 O HOH A 354 O HOH B 401 4444 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 12 CZ ARG A 12 NH2 -0.080 REMARK 500 SER B 9 CB SER B 9 OG 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 12 NE - CZ - NH2 ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG A 84 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 118 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 118 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 13 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 167 CG - CD - NE ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 -128.94 49.67 REMARK 500 GLU A 50 -68.61 66.64 REMARK 500 TYR A 122 -51.39 -126.55 REMARK 500 ASP B 32 -129.22 51.50 REMARK 500 GLU B 50 -96.30 66.27 REMARK 500 VAL B 154 61.23 37.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GHV A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GHV B 201 and CYS B REMARK 800 147 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GHQ RELATED DB: PDB REMARK 900 RELATED ID: 4GHT RELATED DB: PDB REMARK 900 RELATED ID: 5C1X RELATED DB: PDB REMARK 900 RELATED ID: 5C1Y RELATED DB: PDB REMARK 900 RELATED ID: 5C20 RELATED DB: PDB DBREF 5C1U A 1 183 UNP A9XG43 A9XG43_9ENTO 1549 1731 DBREF 5C1U B 1 183 UNP A9XG43 A9XG43_9ENTO 1549 1731 SEQADV 5C1U MET A 0 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U LEU A 184 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U GLU A 185 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS A 186 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS A 187 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS A 188 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS A 189 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS A 190 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS A 191 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U MET B 0 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U LEU B 184 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U GLU B 185 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS B 186 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS B 187 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS B 188 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS B 189 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS B 190 UNP A9XG43 EXPRESSION TAG SEQADV 5C1U HIS B 191 UNP A9XG43 EXPRESSION TAG SEQRES 1 A 192 MET GLY PRO SER LEU ASP PHE ALA LEU SER LEU LEU ARG SEQRES 2 A 192 ARG ASN VAL ARG GLN VAL GLN THR ASP GLN GLY HIS PHE SEQRES 3 A 192 THR MET LEU GLY VAL ARG ASP ARG LEU ALA VAL LEU PRO SEQRES 4 A 192 ARG HIS SER GLN PRO GLY LYS THR ILE TRP ILE GLU HIS SEQRES 5 A 192 LYS LEU VAL ASN ILE LEU ASP ALA VAL GLU LEU VAL ASP SEQRES 6 A 192 GLU GLN GLY VAL ASN LEU GLU LEU THR LEU ILE THR LEU SEQRES 7 A 192 ASP THR ASN GLU LYS PHE ARG ASP ILE THR LYS PHE ILE SEQRES 8 A 192 PRO GLU ASN ILE SER THR ALA SER ASP ALA THR LEU VAL SEQRES 9 A 192 ILE ASN THR GLU HIS MET PRO SER MET PHE VAL PRO VAL SEQRES 10 A 192 GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN LEU SER GLY SEQRES 11 A 192 LYS PRO THR HIS ARG THR MET MET TYR ASN PHE PRO THR SEQRES 12 A 192 LYS ALA GLY GLN CYS GLY GLY VAL VAL THR SER VAL GLY SEQRES 13 A 192 LYS VAL ILE GLY ILE HIS ILE GLY GLY ASN GLY ARG GLN SEQRES 14 A 192 GLY PHE CYS ALA GLY LEU LYS ARG SER TYR PHE ALA SER SEQRES 15 A 192 GLU GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 192 MET GLY PRO SER LEU ASP PHE ALA LEU SER LEU LEU ARG SEQRES 2 B 192 ARG ASN VAL ARG GLN VAL GLN THR ASP GLN GLY HIS PHE SEQRES 3 B 192 THR MET LEU GLY VAL ARG ASP ARG LEU ALA VAL LEU PRO SEQRES 4 B 192 ARG HIS SER GLN PRO GLY LYS THR ILE TRP ILE GLU HIS SEQRES 5 B 192 LYS LEU VAL ASN ILE LEU ASP ALA VAL GLU LEU VAL ASP SEQRES 6 B 192 GLU GLN GLY VAL ASN LEU GLU LEU THR LEU ILE THR LEU SEQRES 7 B 192 ASP THR ASN GLU LYS PHE ARG ASP ILE THR LYS PHE ILE SEQRES 8 B 192 PRO GLU ASN ILE SER THR ALA SER ASP ALA THR LEU VAL SEQRES 9 B 192 ILE ASN THR GLU HIS MET PRO SER MET PHE VAL PRO VAL SEQRES 10 B 192 GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN LEU SER GLY SEQRES 11 B 192 LYS PRO THR HIS ARG THR MET MET TYR ASN PHE PRO THR SEQRES 12 B 192 LYS ALA GLY GLN CYS GLY GLY VAL VAL THR SER VAL GLY SEQRES 13 B 192 LYS VAL ILE GLY ILE HIS ILE GLY GLY ASN GLY ARG GLN SEQRES 14 B 192 GLY PHE CYS ALA GLY LEU LYS ARG SER TYR PHE ALA SER SEQRES 15 B 192 GLU GLN LEU GLU HIS HIS HIS HIS HIS HIS HET GHV A 201 35 HET GHV B 201 35 HETNAM GHV (2S)-2-[[(E)-3-[4-(DIMETHYLAMINO)PHENYL]PROP-2- HETNAM 2 GHV ENOYL]AMINO]-N-[(2S)-1-OXIDANYL-3-[(3S)-2- HETNAM 3 GHV OXIDANYLIDENEPYRROLIDIN-3-YL]PROPAN-2-YL]-3-PHENYL- HETNAM 4 GHV PROPANAMIDE FORMUL 3 GHV 2(C27 H34 N4 O4) FORMUL 5 HOH *325(H2 O) HELIX 1 AA1 GLY A 1 ASN A 14 1 14 HELIX 2 AA2 HIS A 40 GLN A 42 5 3 HELIX 3 AA3 ILE A 86 ILE A 90 5 5 HELIX 4 AA4 LYS A 175 ALA A 180 5 6 HELIX 5 AA5 GLY B 1 ASN B 14 1 14 HELIX 6 AA6 HIS B 40 GLN B 42 5 3 HELIX 7 AA7 ILE B 86 ILE B 90 5 5 HELIX 8 AA8 LYS B 175 ALA B 180 5 6 SHEET 1 AA1 7 VAL A 15 THR A 20 0 SHEET 2 AA1 7 GLY A 23 ARG A 31 -1 O MET A 27 N ARG A 16 SHEET 3 AA1 7 LEU A 34 PRO A 38 -1 O LEU A 34 N ARG A 31 SHEET 4 AA1 7 ASN A 69 LEU A 77 -1 O THR A 73 N LEU A 37 SHEET 5 AA1 7 LYS A 52 VAL A 63 -1 N LEU A 57 O THR A 76 SHEET 6 AA1 7 THR A 46 ILE A 49 -1 N ILE A 47 O VAL A 54 SHEET 7 AA1 7 VAL A 15 THR A 20 -1 N GLN A 19 O TRP A 48 SHEET 1 AA2 7 ALA A 97 ILE A 104 0 SHEET 2 AA2 7 MET A 112 LEU A 127 -1 O VAL A 114 N LEU A 102 SHEET 3 AA2 7 LYS A 130 TYR A 138 -1 O MET A 137 N VAL A 120 SHEET 4 AA2 7 GLY A 169 GLY A 173 -1 O GLY A 169 N TYR A 138 SHEET 5 AA2 7 LYS A 156 GLY A 164 -1 N GLY A 163 O PHE A 170 SHEET 6 AA2 7 VAL A 150 SER A 153 -1 N VAL A 151 O GLY A 159 SHEET 7 AA2 7 ALA A 97 ILE A 104 -1 N THR A 101 O THR A 152 SHEET 1 AA3 7 VAL B 15 THR B 20 0 SHEET 2 AA3 7 GLY B 23 ARG B 31 -1 O MET B 27 N ARG B 16 SHEET 3 AA3 7 LEU B 34 PRO B 38 -1 O LEU B 34 N ARG B 31 SHEET 4 AA3 7 ASN B 69 LEU B 77 -1 O THR B 73 N LEU B 37 SHEET 5 AA3 7 LYS B 52 VAL B 63 -1 N LEU B 57 O THR B 76 SHEET 6 AA3 7 THR B 46 ILE B 49 -1 N ILE B 49 O LYS B 52 SHEET 7 AA3 7 VAL B 15 THR B 20 -1 N GLN B 19 O TRP B 48 SHEET 1 AA4 7 ALA B 97 ILE B 104 0 SHEET 2 AA4 7 MET B 112 LEU B 127 -1 O MET B 112 N ILE B 104 SHEET 3 AA4 7 LYS B 130 TYR B 138 -1 O THR B 132 N LEU B 125 SHEET 4 AA4 7 GLY B 169 GLY B 173 -1 O GLY B 169 N TYR B 138 SHEET 5 AA4 7 LYS B 156 GLY B 164 -1 N ILE B 162 O PHE B 170 SHEET 6 AA4 7 VAL B 150 SER B 153 -1 N VAL B 151 O GLY B 159 SHEET 7 AA4 7 ALA B 97 ILE B 104 -1 N THR B 101 O THR B 152 LINK SG CYS A 147 C27 GHV A 201 1555 1555 1.73 LINK SG CYS B 147 C27 GHV B 201 1555 1555 1.81 SITE 1 AC1 14 ARG A 39 HIS A 40 GLU A 71 LEU A 127 SITE 2 AC1 14 SER A 128 THR A 142 LYS A 143 ALA A 144 SITE 3 AC1 14 CYS A 147 HIS A 161 ILE A 162 GLY A 163 SITE 4 AC1 14 GLY A 164 HOH A 363 SITE 1 AC2 20 PHE B 25 THR B 26 ARG B 39 HIS B 40 SITE 2 AC2 20 GLU B 71 LEU B 127 SER B 128 THR B 142 SITE 3 AC2 20 LYS B 143 GLY B 145 GLN B 146 GLY B 148 SITE 4 AC2 20 GLY B 149 HIS B 161 ILE B 162 GLY B 163 SITE 5 AC2 20 GLY B 164 HOH B 335 HOH B 389 HOH B 390 CRYST1 63.541 64.215 75.403 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013262 0.00000