HEADER TOXIN 16-JUN-15 5C2Z TITLE MOLECULAR INSIGHTS INTO THE SPECIFICITY OF EXFOLIATIVE TOXINS FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXFOLIATIVE TOXIN D2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: ETD2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43 (DE3) PLYSS KEYWDS ESFOLIATIVE TOXIN, STAPHYLOCOCCUS AUREUS, ETD, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR R.B.MARIUTTI,T.A.C.B.SOUZA,A.ULLAH,L.M.ZANPHORLIN,M.T.MURAKAMI, AUTHOR 2 R.K.ARNI REVDAT 3 06-MAR-24 5C2Z 1 REMARK REVDAT 2 01-NOV-17 5C2Z 1 JRNL REMARK REVDAT 1 27-APR-16 5C2Z 0 JRNL AUTH R.B.MARIUTTI,T.A.SOUZA,A.ULLAH,I.P.CARUSO,F.R.DE MORAES, JRNL AUTH 2 L.M.ZANPHORLIN,N.R.TARTAGLIA,N.SEYFFERT,V.A.AZEVEDO, JRNL AUTH 3 Y.LE LOIR,M.T.MURAKAMI,R.K.ARNI JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS EXFOLIATIVE TOXIN JRNL TITL 2 D-LIKE PROTEIN: STRUCTURAL BASIS FOR THE HIGH SPECIFICITY OF JRNL TITL 3 EXFOLIATIVE TOXINS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 467 171 2015 JRNL REFN ESSN 1090-2104 JRNL PMID 26299923 JRNL DOI 10.1016/J.BBRC.2015.08.083 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 31781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6926 - 4.4738 0.98 2603 142 0.1598 0.2074 REMARK 3 2 4.4738 - 3.5520 0.98 2577 127 0.1467 0.2090 REMARK 3 3 3.5520 - 3.1033 0.98 2575 133 0.1694 0.2380 REMARK 3 4 3.1033 - 2.8197 0.98 2566 150 0.1835 0.2681 REMARK 3 5 2.8197 - 2.6177 0.98 2583 126 0.1880 0.2672 REMARK 3 6 2.6177 - 2.4634 0.98 2555 129 0.1908 0.2738 REMARK 3 7 2.4634 - 2.3400 0.97 2540 130 0.1929 0.3149 REMARK 3 8 2.3400 - 2.2382 0.97 2546 127 0.1934 0.2862 REMARK 3 9 2.2382 - 2.1520 0.98 2547 141 0.1972 0.3036 REMARK 3 10 2.1520 - 2.0778 0.97 2488 161 0.2081 0.3057 REMARK 3 11 2.0778 - 2.0128 0.92 2398 137 0.2236 0.3000 REMARK 3 12 2.0128 - 1.9553 0.85 2187 113 0.2522 0.3486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3924 REMARK 3 ANGLE : 1.071 5309 REMARK 3 CHIRALITY : 0.042 592 REMARK 3 PLANARITY : 0.004 692 REMARK 3 DIHEDRAL : 13.609 1457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0553 -16.8989 -12.5657 REMARK 3 T TENSOR REMARK 3 T11: 0.3118 T22: 0.3529 REMARK 3 T33: 0.5140 T12: 0.0336 REMARK 3 T13: -0.1232 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.8125 L22: 3.6519 REMARK 3 L33: 0.4084 L12: -1.5580 REMARK 3 L13: 0.0316 L23: -0.4644 REMARK 3 S TENSOR REMARK 3 S11: 0.5180 S12: 0.1284 S13: -0.2683 REMARK 3 S21: -0.1422 S22: -0.4409 S23: -0.5347 REMARK 3 S31: -0.0000 S32: 0.0686 S33: -0.0454 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6541 -15.1726 -34.8077 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.1279 REMARK 3 T33: 0.2448 T12: -0.0096 REMARK 3 T13: 0.0522 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.4448 L22: 3.8079 REMARK 3 L33: 5.7272 L12: 0.4203 REMARK 3 L13: 0.1266 L23: 2.0970 REMARK 3 S TENSOR REMARK 3 S11: -0.1401 S12: 0.1075 S13: 0.2159 REMARK 3 S21: -0.1065 S22: 0.2009 S23: -0.5224 REMARK 3 S31: -0.2808 S32: 0.3256 S33: 0.0276 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2889 -22.4794 -31.1558 REMARK 3 T TENSOR REMARK 3 T11: 0.1957 T22: 0.2854 REMARK 3 T33: 0.1672 T12: 0.0340 REMARK 3 T13: -0.0146 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.1862 L22: 3.4888 REMARK 3 L33: 2.2382 L12: -0.9302 REMARK 3 L13: 0.2140 L23: 0.7988 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: -0.2946 S13: -0.0251 REMARK 3 S21: 0.0272 S22: -0.1008 S23: 0.3195 REMARK 3 S31: -0.1809 S32: -0.6202 S33: -0.0499 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4142 -18.0951 -39.9907 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.2395 REMARK 3 T33: 0.1443 T12: 0.0294 REMARK 3 T13: -0.0331 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.7299 L22: 1.6431 REMARK 3 L33: 2.0491 L12: -1.1698 REMARK 3 L13: 0.2775 L23: 0.4333 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.0959 S13: 0.0878 REMARK 3 S21: -0.3746 S22: -0.0016 S23: 0.0438 REMARK 3 S31: -0.0875 S32: -0.3460 S33: -0.0275 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3822 -24.7292 -27.7077 REMARK 3 T TENSOR REMARK 3 T11: 0.1447 T22: 0.1701 REMARK 3 T33: 0.1878 T12: 0.0354 REMARK 3 T13: 0.0186 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.6403 L22: 2.2475 REMARK 3 L33: 2.7369 L12: 0.3992 REMARK 3 L13: 0.7004 L23: 0.5450 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: -0.1883 S13: 0.0241 REMARK 3 S21: -0.0148 S22: -0.0316 S23: -0.1738 REMARK 3 S31: -0.0158 S32: -0.2409 S33: 0.0324 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1962 -40.4446 -26.0912 REMARK 3 T TENSOR REMARK 3 T11: 0.3136 T22: 0.2472 REMARK 3 T33: 0.2156 T12: -0.0638 REMARK 3 T13: 0.0399 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 4.7722 L22: 3.9100 REMARK 3 L33: 2.7613 L12: 0.7552 REMARK 3 L13: -0.0051 L23: -1.2302 REMARK 3 S TENSOR REMARK 3 S11: -0.2246 S12: -0.0865 S13: -0.2147 REMARK 3 S21: -0.1900 S22: 0.0071 S23: 0.1617 REMARK 3 S31: 0.9633 S32: -0.4905 S33: 0.1739 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8765 6.3609 0.7241 REMARK 3 T TENSOR REMARK 3 T11: 0.2292 T22: 0.1944 REMARK 3 T33: 0.2374 T12: 0.0073 REMARK 3 T13: 0.0111 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.4189 L22: 1.0421 REMARK 3 L33: 1.8756 L12: -0.8728 REMARK 3 L13: -1.9531 L23: 0.3893 REMARK 3 S TENSOR REMARK 3 S11: 0.2140 S12: -0.1177 S13: 0.4470 REMARK 3 S21: 0.0611 S22: -0.0101 S23: -0.1128 REMARK 3 S31: -0.1650 S32: -0.0718 S33: -0.1417 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6561 -1.4468 -15.4120 REMARK 3 T TENSOR REMARK 3 T11: 0.2193 T22: 0.1742 REMARK 3 T33: 0.1577 T12: 0.0570 REMARK 3 T13: 0.0017 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 2.6231 L22: 1.5227 REMARK 3 L33: 0.7855 L12: 0.1809 REMARK 3 L13: -0.6706 L23: 0.0391 REMARK 3 S TENSOR REMARK 3 S11: 0.1858 S12: 0.2450 S13: -0.0738 REMARK 3 S21: -0.2657 S22: -0.0842 S23: -0.0216 REMARK 3 S31: -0.0792 S32: -0.0799 S33: -0.0815 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0119 -0.8737 0.1359 REMARK 3 T TENSOR REMARK 3 T11: 0.1741 T22: 0.1761 REMARK 3 T33: 0.1485 T12: -0.0166 REMARK 3 T13: -0.0061 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.2142 L22: 1.7393 REMARK 3 L33: 1.7486 L12: -1.5365 REMARK 3 L13: -1.0364 L23: 0.4211 REMARK 3 S TENSOR REMARK 3 S11: 0.0853 S12: -0.1487 S13: 0.1826 REMARK 3 S21: 0.0413 S22: 0.0123 S23: -0.1041 REMARK 3 S31: -0.0327 S32: -0.1207 S33: -0.0555 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 249 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8611 -18.3142 -9.6217 REMARK 3 T TENSOR REMARK 3 T11: 0.3055 T22: 0.1645 REMARK 3 T33: 0.3275 T12: -0.0003 REMARK 3 T13: -0.1109 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 3.3848 L22: 2.6058 REMARK 3 L33: 2.3308 L12: 0.3622 REMARK 3 L13: -0.7767 L23: 0.5633 REMARK 3 S TENSOR REMARK 3 S11: 0.4090 S12: -0.0720 S13: -0.7301 REMARK 3 S21: -0.1803 S22: -0.2355 S23: 0.1297 REMARK 3 S31: 0.1993 S32: -0.1696 S33: -0.0266 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.458 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31792 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 35.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5 30% 2-PROPANOL, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.57050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER CONFIRMED BY ANALYTICAL ULTRACENTRIFUGATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 GLN A 279 REMARK 465 HIS B 25 REMARK 465 HIS B 26 REMARK 465 HIS B 27 REMARK 465 HIS B 28 REMARK 465 HIS B 29 REMARK 465 HIS B 30 REMARK 465 MET B 31 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 31 CG SD CE REMARK 480 GLU A 33 CG CD OE1 OE2 REMARK 480 LYS A 88 CE NZ REMARK 480 LYS A 107 CD CE NZ REMARK 480 GLU A 118 CA CB CG CD OE1 OE2 REMARK 480 GLY A 119 CA REMARK 480 LYS A 124 CD CE NZ REMARK 480 LYS B 41 CE NZ REMARK 480 LYS B 76 CB CG CD CE NZ REMARK 480 ARG B 99 CZ NH1 NH2 REMARK 480 LYS B 177 NZ REMARK 480 LYS B 197 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 171 O HOH B 301 2.18 REMARK 500 O GLN B 279 O HOH B 302 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 470 O HOH B 466 1554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 66 C - N - CD ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 78 -57.97 -121.40 REMARK 500 ALA A 81 -154.39 -130.85 REMARK 500 ILE A 181 -169.12 -128.41 REMARK 500 THR A 190 -71.00 -73.05 REMARK 500 GLN A 206 -60.10 -105.16 REMARK 500 SER B 51 -123.82 125.36 REMARK 500 LYS B 78 -60.47 -131.48 REMARK 500 ALA B 81 -148.09 -136.57 REMARK 500 ASN B 154 -167.95 -78.14 REMARK 500 GLN B 206 -68.50 -95.72 REMARK 500 THR B 264 -158.25 -146.95 REMARK 500 GLU B 278 65.49 -118.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 5C2Z A 32 279 UNP L0RUV7 L0RUV7_STAAU 33 280 DBREF 5C2Z B 32 279 UNP L0RUV7 L0RUV7_STAAU 33 280 SEQADV 5C2Z HIS A 25 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z HIS A 26 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z HIS A 27 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z HIS A 28 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z HIS A 29 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z HIS A 30 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z MET A 31 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z HIS B 25 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z HIS B 26 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z HIS B 27 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z HIS B 28 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z HIS B 29 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z HIS B 30 UNP L0RUV7 EXPRESSION TAG SEQADV 5C2Z MET B 31 UNP L0RUV7 EXPRESSION TAG SEQRES 1 A 255 HIS HIS HIS HIS HIS HIS MET ILE GLU TYR THR ASP GLU SEQRES 2 A 255 GLU ILE GLN LYS LYS ARG ASP PHE PHE LYS THR ARG PRO SEQRES 3 A 255 SER ASP SER GLU LEU PHE SER LYS ILE GLN ASP THR THR SEQRES 4 A 255 ARG SER PRO TYR SER SER VAL GLY THR VAL PHE VAL LYS SEQRES 5 A 255 GLY LYS THR ILE ALA THR GLY ILE LEU ILE GLY LYS ASN SEQRES 6 A 255 THR VAL ILE THR ASN LYS HIS ILE ALA ARG LEU ALA GLU SEQRES 7 A 255 ASN ASP PRO ASN LYS VAL ILE PHE THR PRO GLY SER THR SEQRES 8 A 255 ARG ASP GLU GLY SER LEU VAL VAL LYS LYS PRO PHE GLY SEQRES 9 A 255 GLU PHE ILE ALA GLU GLU ILE ASN GLU ALA PRO TYR GLY SEQRES 10 A 255 GLY GLY THR ASP LEU SER ILE ILE LYS LEU LYS PRO ASN SEQRES 11 A 255 GLN TYR GLY LYS SER ALA GLY ASP LEU VAL THR PRO ALA SEQRES 12 A 255 ALA ILE PRO ASP ASN VAL ASP VAL GLN LYS GLY ASP LYS SEQRES 13 A 255 ILE SER LEU LEU GLY TYR PRO TYR ASN THR SER THR HIS SEQRES 14 A 255 SER LEU TYR LYS SER GLN ILE GLU VAL PHE ASN ASN GLN SEQRES 15 A 255 THR PHE GLN TYR PHE ALA TYR THR GLU PRO GLY ASN SER SEQRES 16 A 255 GLY SER GLY ILE PHE ASN LEU HIS GLY GLU LEU VAL GLY SEQRES 17 A 255 ILE HIS SER GLY LYS GLY GLY GLN TYR GLY LEU PRO PHE SEQRES 18 A 255 GLY ILE LEU PHE ASN ARG GLN ILE GLY SER SER TYR SER SEQRES 19 A 255 THR ASP LYS THR VAL THR THR LEU ALA ILE ASP LEU LYS SEQRES 20 A 255 ASN LYS ALA LYS THR GLN GLU GLN SEQRES 1 B 255 HIS HIS HIS HIS HIS HIS MET ILE GLU TYR THR ASP GLU SEQRES 2 B 255 GLU ILE GLN LYS LYS ARG ASP PHE PHE LYS THR ARG PRO SEQRES 3 B 255 SER ASP SER GLU LEU PHE SER LYS ILE GLN ASP THR THR SEQRES 4 B 255 ARG SER PRO TYR SER SER VAL GLY THR VAL PHE VAL LYS SEQRES 5 B 255 GLY LYS THR ILE ALA THR GLY ILE LEU ILE GLY LYS ASN SEQRES 6 B 255 THR VAL ILE THR ASN LYS HIS ILE ALA ARG LEU ALA GLU SEQRES 7 B 255 ASN ASP PRO ASN LYS VAL ILE PHE THR PRO GLY SER THR SEQRES 8 B 255 ARG ASP GLU GLY SER LEU VAL VAL LYS LYS PRO PHE GLY SEQRES 9 B 255 GLU PHE ILE ALA GLU GLU ILE ASN GLU ALA PRO TYR GLY SEQRES 10 B 255 GLY GLY THR ASP LEU SER ILE ILE LYS LEU LYS PRO ASN SEQRES 11 B 255 GLN TYR GLY LYS SER ALA GLY ASP LEU VAL THR PRO ALA SEQRES 12 B 255 ALA ILE PRO ASP ASN VAL ASP VAL GLN LYS GLY ASP LYS SEQRES 13 B 255 ILE SER LEU LEU GLY TYR PRO TYR ASN THR SER THR HIS SEQRES 14 B 255 SER LEU TYR LYS SER GLN ILE GLU VAL PHE ASN ASN GLN SEQRES 15 B 255 THR PHE GLN TYR PHE ALA TYR THR GLU PRO GLY ASN SER SEQRES 16 B 255 GLY SER GLY ILE PHE ASN LEU HIS GLY GLU LEU VAL GLY SEQRES 17 B 255 ILE HIS SER GLY LYS GLY GLY GLN TYR GLY LEU PRO PHE SEQRES 18 B 255 GLY ILE LEU PHE ASN ARG GLN ILE GLY SER SER TYR SER SEQRES 19 B 255 THR ASP LYS THR VAL THR THR LEU ALA ILE ASP LEU LYS SEQRES 20 B 255 ASN LYS ALA LYS THR GLN GLU GLN FORMUL 3 HOH *364(H2 O) HELIX 1 AA1 THR A 35 THR A 48 1 14 HELIX 2 AA2 PRO A 66 SER A 68 5 3 HELIX 3 AA3 LYS A 95 ARG A 99 1 5 HELIX 4 AA4 LEU A 100 GLU A 102 5 3 HELIX 5 AA5 ASP A 104 ASN A 106 5 3 HELIX 6 AA6 SER A 159 VAL A 164 1 6 HELIX 7 AA7 GLU A 215 SER A 219 5 5 HELIX 8 AA8 LEU A 266 GLN A 277 1 12 HELIX 9 AA9 THR B 35 PHE B 46 1 12 HELIX 10 AB1 PRO B 66 SER B 68 5 3 HELIX 11 AB2 ASN B 94 ARG B 99 1 6 HELIX 12 AB3 LEU B 100 GLU B 102 5 3 HELIX 13 AB4 ASP B 104 ASN B 106 5 3 HELIX 14 AB5 SER B 159 VAL B 164 1 6 HELIX 15 AB6 GLU B 215 SER B 219 5 5 HELIX 16 AB7 LEU B 266 THR B 276 1 11 SHEET 1 AA1 8 PHE A 56 LYS A 58 0 SHEET 2 AA1 8 TYR A 196 ASN A 204 -1 O LYS A 197 N SER A 57 SHEET 3 AA1 8 GLN A 209 PHE A 211 -1 O GLN A 209 N PHE A 203 SHEET 4 AA1 8 LEU A 243 LEU A 248 -1 O PRO A 244 N TYR A 210 SHEET 5 AA1 8 LEU A 230 GLY A 238 -1 N ILE A 233 O ILE A 247 SHEET 6 AA1 8 GLY A 222 PHE A 224 -1 N ILE A 223 O VAL A 231 SHEET 7 AA1 8 LYS A 180 GLY A 185 -1 N LEU A 184 O GLY A 222 SHEET 8 AA1 8 TYR A 196 ASN A 204 -1 O ILE A 200 N ILE A 181 SHEET 1 AA2 7 VAL A 70 VAL A 75 0 SHEET 2 AA2 7 THR A 79 LEU A 85 -1 O THR A 79 N VAL A 75 SHEET 3 AA2 7 THR A 90 ASN A 94 -1 O ILE A 92 N ILE A 84 SHEET 4 AA2 7 LEU A 146 LEU A 151 -1 O ILE A 149 N VAL A 91 SHEET 5 AA2 7 PHE A 130 ASN A 136 -1 N GLU A 133 O LYS A 150 SHEET 6 AA2 7 VAL A 108 PRO A 112 -1 N PHE A 110 O PHE A 130 SHEET 7 AA2 7 VAL A 70 VAL A 75 -1 N PHE A 74 O ILE A 109 SHEET 1 AA3 2 GLN A 252 ILE A 253 0 SHEET 2 AA3 2 THR A 264 THR A 265 -1 O THR A 264 N ILE A 253 SHEET 1 AA4 8 PHE B 56 LYS B 58 0 SHEET 2 AA4 8 TYR B 196 ASN B 204 -1 O LYS B 197 N SER B 57 SHEET 3 AA4 8 GLN B 209 TYR B 210 -1 O GLN B 209 N PHE B 203 SHEET 4 AA4 8 LEU B 243 LEU B 248 -1 O PRO B 244 N TYR B 210 SHEET 5 AA4 8 LEU B 230 GLY B 238 -1 N GLY B 236 O PHE B 245 SHEET 6 AA4 8 GLY B 222 PHE B 224 -1 N ILE B 223 O GLY B 232 SHEET 7 AA4 8 LYS B 180 GLY B 185 -1 N SER B 182 O PHE B 224 SHEET 8 AA4 8 TYR B 196 ASN B 204 -1 O ILE B 200 N ILE B 181 SHEET 1 AA5 7 VAL B 70 VAL B 75 0 SHEET 2 AA5 7 THR B 79 LEU B 85 -1 O ALA B 81 N VAL B 73 SHEET 3 AA5 7 THR B 90 THR B 93 -1 O ILE B 92 N ILE B 84 SHEET 4 AA5 7 SER B 147 LEU B 151 -1 O ILE B 149 N VAL B 91 SHEET 5 AA5 7 PHE B 130 ASN B 136 -1 N GLU B 133 O LYS B 150 SHEET 6 AA5 7 VAL B 108 PRO B 112 -1 N PHE B 110 O PHE B 130 SHEET 7 AA5 7 VAL B 70 VAL B 75 -1 N PHE B 74 O ILE B 109 SHEET 1 AA6 2 GLN B 252 ILE B 253 0 SHEET 2 AA6 2 THR B 264 THR B 265 -1 O THR B 264 N ILE B 253 CISPEP 1 SER A 65 PRO A 66 0 5.27 CISPEP 2 PRO B 50 SER B 51 0 3.48 CISPEP 3 SER B 65 PRO B 66 0 4.97 CRYST1 49.412 93.141 50.478 90.00 91.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020238 0.000000 0.000434 0.00000 SCALE2 0.000000 0.010736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019815 0.00000