HEADER OXIDOREDUCTASE 17-JUN-15 5C3O TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL TRUNCATED NEUROSPORA CRASSA T7H TITLE 2 (NCT7HDELTAC) IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMINE DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-299; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 STRAIN: ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987; SOURCE 5 GENE: NCU06416; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS DIOXYGENASE, APO FORM, DSBH FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.LI,T.ZHANG,J.DING REVDAT 2 02-DEC-15 5C3O 1 JRNL REVDAT 1 21-OCT-15 5C3O 0 JRNL AUTH W.LI,T.ZHANG,J.DING JRNL TITL MOLECULAR BASIS FOR THE SUBSTRATE SPECIFICITY AND CATALYTIC JRNL TITL 2 MECHANISM OF THYMINE-7-HYDROXYLASE IN FUNGI JRNL REF NUCLEIC ACIDS RES. V. 43 10026 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26429971 JRNL DOI 10.1093/NAR/GKV979 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1053 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1424 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2049 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.928 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2119 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1996 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2862 ; 1.054 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4601 ; 3.558 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 5.700 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;34.426 ;24.608 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;14.622 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.233 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2386 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 484 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1036 ; 1.888 ; 4.238 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1035 ; 1.888 ; 4.236 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1288 ; 3.369 ; 6.320 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8585 48.9611 31.6384 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: 0.0242 REMARK 3 T33: 0.0225 T12: 0.0183 REMARK 3 T13: -0.0110 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.6527 L22: 0.6670 REMARK 3 L33: 0.8535 L12: -0.7933 REMARK 3 L13: 0.7389 L23: -0.4464 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: -0.1053 S13: -0.1704 REMARK 3 S21: 0.0012 S22: 0.0847 S23: 0.0799 REMARK 3 S31: 0.0705 S32: -0.0473 S33: -0.0832 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5C3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20591 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SADABS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M (NH4)2SO4, 0.1 M MES, 30%(W/V) REMARK 280 PEGMME 5000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.31550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.31550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.31550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 LYS A 97 REMARK 465 VAL A 98 REMARK 465 THR A 99 REMARK 465 GLN A 100 REMARK 465 LEU A 101 REMARK 465 THR A 102 REMARK 465 ASP A 103 REMARK 465 PRO A 104 REMARK 465 ALA A 105 REMARK 465 GLU A 106 REMARK 465 ILE A 107 REMARK 465 GLU A 108 REMARK 465 LYS A 109 REMARK 465 ILE A 110 REMARK 465 ARG A 111 REMARK 465 SER A 112 REMARK 465 ALA A 113 REMARK 465 ALA A 114 REMARK 465 PRO A 115 REMARK 465 ASP A 116 REMARK 465 LYS A 198 REMARK 465 SER A 199 REMARK 465 GLU A 200 REMARK 465 VAL A 201 REMARK 465 PHE A 202 REMARK 465 LYS A 203 REMARK 465 ILE A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 GLY A 207 REMARK 465 LYS A 278 REMARK 465 GLN A 279 REMARK 465 GLU A 280 REMARK 465 ASP A 281 REMARK 465 VAL A 282 REMARK 465 ASN A 296 REMARK 465 HIS A 297 REMARK 465 LYS A 298 REMARK 465 SER A 299 REMARK 465 LEU A 300 REMARK 465 GLU A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 42 -64.07 -102.80 REMARK 500 THR A 82 -92.09 -111.47 REMARK 500 ASP A 140 -122.16 55.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 407 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 216 OD1 REMARK 620 2 HOH A 585 O 171.8 REMARK 620 3 HOH A 563 O 106.4 66.2 REMARK 620 4 HOH A 589 O 87.9 91.9 112.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C3P RELATED DB: PDB REMARK 900 RELATED ID: 5C3Q RELATED DB: PDB REMARK 900 RELATED ID: 5C3R RELATED DB: PDB REMARK 900 RELATED ID: 5C3S RELATED DB: PDB DBREF 5C3O A 1 299 UNP Q7RYZ9 Q7RYZ9_NEUCR 1 299 SEQADV 5C3O GLY A -1 UNP Q7RYZ9 EXPRESSION TAG SEQADV 5C3O SER A 0 UNP Q7RYZ9 EXPRESSION TAG SEQADV 5C3O LEU A 300 UNP Q7RYZ9 EXPRESSION TAG SEQADV 5C3O GLU A 301 UNP Q7RYZ9 EXPRESSION TAG SEQADV 5C3O HIS A 302 UNP Q7RYZ9 EXPRESSION TAG SEQADV 5C3O HIS A 303 UNP Q7RYZ9 EXPRESSION TAG SEQADV 5C3O HIS A 304 UNP Q7RYZ9 EXPRESSION TAG SEQADV 5C3O HIS A 305 UNP Q7RYZ9 EXPRESSION TAG SEQADV 5C3O HIS A 306 UNP Q7RYZ9 EXPRESSION TAG SEQADV 5C3O HIS A 307 UNP Q7RYZ9 EXPRESSION TAG SEQRES 1 A 309 GLY SER MSE GLU LYS ALA ALA VAL ASN GLU ASP GLY LEU SEQRES 2 A 309 VAL ILE PRO LEU ILE ASP PHE SER LYS PHE LEU GLU GLY SEQRES 3 A 309 ASP GLU THR LEU LYS LEU GLU THR ALA LYS ALA ILE LEU SEQRES 4 A 309 HIS GLY PHE GLN THR ALA GLY PHE ILE TYR LEU LYS ASN SEQRES 5 A 309 ILE PRO ILE GLN PRO ASP PHE ARG GLU HIS VAL PHE ASN SEQRES 6 A 309 THR SER ALA LYS PHE PHE LYS LEU PRO LYS GLU LYS LYS SEQRES 7 A 309 LEU GLU VAL GLY TRP THR THR PRO GLU ALA ASN ARG GLY SEQRES 8 A 309 TYR SER ALA PRO GLY ARG GLU LYS VAL THR GLN LEU THR SEQRES 9 A 309 ASP PRO ALA GLU ILE GLU LYS ILE ARG SER ALA ALA PRO SEQRES 10 A 309 ASP ILE LYS GLU SER TYR GLU ILE GLY ARG GLU ASP GLU SEQRES 11 A 309 PRO GLY HIS PRO ASN PRO TRP PRO ALA GLU GLN ASP ASP SEQRES 12 A 309 LEU VAL GLY PHE LYS SER THR MSE ASN ASN PHE PHE ASP SEQRES 13 A 309 GLN CYS LYS ALA LEU HIS ILE GLU VAL MSE ARG ALA ILE SEQRES 14 A 309 ALA VAL GLY MSE GLY ILE ASP ALA ASN TYR PHE ASP SER SEQRES 15 A 309 PHE VAL ASP VAL GLY ASP ASN ILE LEU ARG LEU LEU HIS SEQRES 16 A 309 TYR PRO ALA VAL LYS SER GLU VAL PHE LYS ILE ASN PRO SEQRES 17 A 309 GLY GLN VAL ARG ALA GLY GLU HIS THR ASP TYR GLY SER SEQRES 18 A 309 ILE THR LEU LEU PHE GLN ASP SER ARG GLY GLY LEU GLN SEQRES 19 A 309 VAL LYS SER PRO ASN GLY GLN PHE ILE ASP ALA THR PRO SEQRES 20 A 309 ILE GLU ASN THR VAL VAL VAL ASN ALA GLY ASP LEU LEU SEQRES 21 A 309 ALA ARG TRP SER ASN ASP THR ILE LYS SER THR VAL HIS SEQRES 22 A 309 ARG VAL VAL GLU PRO PRO LYS GLN GLU ASP VAL HIS PRO SEQRES 23 A 309 PRO ARG TYR SER ILE ALA TYR PHE CYS ASN PRO ASN HIS SEQRES 24 A 309 LYS SER LEU GLU HIS HIS HIS HIS HIS HIS MODRES 5C3O MSE A 1 MET MODIFIED RESIDUE MODRES 5C3O MSE A 149 MET MODIFIED RESIDUE MODRES 5C3O MSE A 164 MET MODIFIED RESIDUE MODRES 5C3O MSE A 171 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 149 8 HET MSE A 164 8 HET MSE A 171 8 HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET CA A 407 1 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 EDO 6(C2 H6 O2) FORMUL 8 CA CA 2+ FORMUL 9 HOH *109(H2 O) HELIX 1 AA1 PHE A 18 GLY A 24 1 7 HELIX 2 AA2 ASP A 25 ALA A 43 1 19 HELIX 3 AA3 GLN A 54 LEU A 71 1 18 HELIX 4 AA4 PRO A 72 GLU A 78 1 7 HELIX 5 AA5 GLN A 139 VAL A 143 5 5 HELIX 6 AA6 GLY A 144 GLY A 172 1 29 HELIX 7 AA7 PHE A 178 VAL A 184 1 7 HELIX 8 AA8 GLY A 255 SER A 262 1 8 SHEET 1 AA1 2 VAL A 6 GLU A 8 0 SHEET 2 AA1 2 LEU A 11 ILE A 13 -1 O ILE A 13 N VAL A 6 SHEET 1 AA2 8 LEU A 15 ASP A 17 0 SHEET 2 AA2 8 PHE A 45 LYS A 49 1 O LYS A 49 N ILE A 16 SHEET 3 AA2 8 THR A 249 ALA A 254 -1 O VAL A 252 N ILE A 46 SHEET 4 AA2 8 ILE A 220 GLN A 225 -1 N LEU A 223 O VAL A 251 SHEET 5 AA2 8 ARG A 286 CYS A 293 -1 O ILE A 289 N PHE A 224 SHEET 6 AA2 8 ASN A 187 TYR A 194 -1 N ARG A 190 O ALA A 290 SHEET 7 AA2 8 GLU A 119 ILE A 123 -1 N ILE A 123 O LEU A 189 SHEET 8 AA2 8 GLY A 89 SER A 91 -1 N SER A 91 O SER A 120 SHEET 1 AA3 3 PHE A 240 ASP A 242 0 SHEET 2 AA3 3 LEU A 231 LYS A 234 -1 N VAL A 233 O ILE A 241 SHEET 3 AA3 3 HIS A 271 VAL A 273 -1 O ARG A 272 N GLN A 232 LINK C SER A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C THR A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N ASN A 150 1555 1555 1.33 LINK C VAL A 163 N MSE A 164 1555 1555 1.33 LINK C MSE A 164 N ARG A 165 1555 1555 1.34 LINK C GLY A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N GLY A 172 1555 1555 1.33 LINK OD1 ASP A 216 CA CA A 407 1555 1555 2.22 LINK CA CA A 407 O HOH A 585 1555 1555 2.34 LINK CA CA A 407 O HOH A 563 1555 1555 2.45 LINK CA CA A 407 O HOH A 589 1555 1555 2.99 CISPEP 1 ALA A 196 VAL A 197 0 -5.83 SITE 1 AC1 7 LEU A 22 VAL A 79 TRP A 135 PRO A 136 SITE 2 AC1 7 ALA A 137 HOH A 503 HOH A 509 SITE 1 AC2 5 LYS A 34 LEU A 37 HIS A 38 GLN A 41 SITE 2 AC2 5 HOH A 501 SITE 1 AC3 7 ILE A 51 ILE A 53 PRO A 55 ARG A 58 SITE 2 AC3 7 ASN A 248 THR A 249 HOH A 528 SITE 1 AC4 2 ASN A 63 ALA A 66 SITE 1 AC5 2 PRO A 195 ALA A 196 SITE 1 AC6 4 ALA A 92 PRO A 93 LYS A 118 SER A 120 SITE 1 AC7 6 HIS A 214 ASP A 216 HIS A 271 HOH A 563 SITE 2 AC7 6 HOH A 585 HOH A 589 CRYST1 119.148 119.148 56.631 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008393 0.004846 0.000000 0.00000 SCALE2 0.000000 0.009691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017658 0.00000