HEADER LYASE 17-JUN-15 5C3U TITLE CRYSTAL STRUCTURE OF A FUNGAL L-SERINE AMMONIA-LYASE FROM RHIZOMUCOR TITLE 2 MIEHEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-SERINE AMMONIA-LYASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.3.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOMUCOR MIEHEI CAU432; SOURCE 3 ORGANISM_TAXID: 1031333; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS L-SERINE AMMONIA-LYASE, BETA-FAMILY PLP DEPENDENT ENZYMES, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.ZHEN,Y.QIAOJUAN,Y.SHAOQING,J.ZHENGQIANG REVDAT 2 10-JAN-24 5C3U 1 REMARK REVDAT 1 09-DEC-15 5C3U 0 JRNL AUTH Z.QIN,Q.YAN,Q.MA,Z.JIANG JRNL TITL CRYSTAL STRUCTURE AND CHARACTERIZATION OF A NOVEL L-SERINE JRNL TITL 2 AMMONIA-LYASE FROM RHIZOMUCOR MIEHEI. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 466 431 2015 JRNL REFN ESSN 1090-2104 JRNL PMID 26367174 JRNL DOI 10.1016/J.BBRC.2015.09.043 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 27578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1791 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.70000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : 1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.413 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2413 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3297 ; 1.363 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 5.411 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;40.030 ;24.432 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 388 ;14.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ; 8.009 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1784 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5C3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 55.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1P5J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M KCL, 35% 5/4, PO/OH, AND 50 MM REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.56050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.56050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.49000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.44250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.49000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.44250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.56050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.49000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.44250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.56050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.49000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.44250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 GLU A 7 REMARK 465 ASP A 8 REMARK 465 ASN A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 PHE A 12 REMARK 465 ASP A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 HIS A 331 REMARK 465 PRO A 332 REMARK 465 ALA A 333 REMARK 465 VAL A 334 REMARK 465 VAL A 335 REMARK 465 VAL A 336 REMARK 465 LYS A 337 REMARK 465 SER A 338 REMARK 465 GLY A 339 REMARK 465 SER A 340 REMARK 465 GLU A 341 REMARK 465 ILE A 342 REMARK 465 PHE A 343 REMARK 465 MET A 344 REMARK 465 LYS A 345 REMARK 465 MET A 346 REMARK 465 ASP A 347 REMARK 465 ASN A 348 REMARK 465 THR A 349 REMARK 465 LEU A 350 REMARK 465 GLN A 351 REMARK 465 SER A 352 REMARK 465 VAL A 353 REMARK 465 ALA A 354 REMARK 465 ASP A 355 REMARK 465 VAL A 356 REMARK 465 ASP A 357 REMARK 465 PRO A 358 REMARK 465 GLU A 359 REMARK 465 ASN A 360 REMARK 465 VAL A 361 REMARK 465 ASP A 362 REMARK 465 VAL A 363 REMARK 465 HIS A 364 REMARK 465 SER A 365 REMARK 465 SER A 366 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 ASP A 296 CG OD1 OD2 REMARK 470 LYS A 328 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 53 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 48 -16.91 77.55 REMARK 500 SER A 77 50.99 -94.09 REMARK 500 ASN A 105 128.55 -38.25 REMARK 500 SER A 147 -42.56 -142.81 REMARK 500 SER A 210 85.61 -153.15 REMARK 500 LYS A 227 7.77 83.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 401 DBREF 5C3U A 1 366 PDB 5C3U 5C3U 1 366 SEQRES 1 A 366 MET ASP ASP SER SER ASP GLU ASP ASN LEU LEU PHE ASP SEQRES 2 A 366 ASP LEU GLN SER LEU HIS VAL ALA THR PRO LEU LEU HIS SEQRES 3 A 366 ALA PRO ASN LEU THR LYS GLU LEU GLU CYS ASN VAL PHE SEQRES 4 A 366 LEU LYS MET GLU ASN ILE GLN PRO SER GLY SER VAL LYS SEQRES 5 A 366 MET ARG GLY ILE GLY ALA PHE CYS TYR GLN ALA VAL GLN SEQRES 6 A 366 THR ARG GLY THR ASN ILE GLN PHE VAL CYS GLY SER GLY SEQRES 7 A 366 PRO ASN THR VAL LEU ALA VAL SER TYR CYS ALA ARG GLN SEQRES 8 A 366 LEU GLY VAL GLU ALA ILE ILE VAL VAL PRO LYS ALA THR SEQRES 9 A 366 ASN GLU ARG ILE CYS GLN SER ILE ARG THR ASP GLY SER SEQRES 10 A 366 HIS LEU ILE LEU TYR GLY GLU ASN TRP THR ALA ALA GLU SEQRES 11 A 366 VAL HIS ALA ARG LYS LEU VAL ARG ARG ASN GLY ILE TYR SEQRES 12 A 366 VAL PRO SER SER ASP HIS ALA LEU ILE TRP GLN GLY HIS SEQRES 13 A 366 SER THR ILE VAL GLN GLU LEU LYS THR GLN LEU ASN ASP SEQRES 14 A 366 ASN PRO PRO ALA ALA ILE ILE CYS PRO VAL GLY GLY GLY SEQRES 15 A 366 GLY LEU LEU ASN GLY VAL ILE MET GLY LEU GLN GLU ALA SEQRES 16 A 366 ASP TRP LYS ASP VAL PRO VAL ILE ALA VAL GLU THR HIS SEQRES 17 A 366 GLY SER ASN ALA PHE GLN ALA SER VAL VAL ALA GLY GLU SEQRES 18 A 366 LEU VAL ILE MET GLU LYS ASN ASN THR ILE ALA THR SER SEQRES 19 A 366 LEU ILE SER LYS ALA VAL SER SER LYS SER LEU GLU LEU SEQRES 20 A 366 SER LEU ASN HIS PRO VAL VAL PRO PHE ALA VAL SER ASP SEQRES 21 A 366 ALA MET ALA ALA ASP ALA VAL ARG LEU PHE ALA GLU ASP SEQRES 22 A 366 PHE LYS MET LEU VAL GLU ALA SER ALA GLY ALA ALA LEU SEQRES 23 A 366 SER LEU CYS TYR THR HIS LEU ILE ARG ASP ILE LEU PRO SEQRES 24 A 366 SER LEU SER PRO ALA LYS ASP VAL VAL VAL LEU VAL THR SEQRES 25 A 366 GLY GLY SER ASP ILE SER LEU ALA HIS LEU ASP GLU TYR SEQRES 26 A 366 ARG LYS LYS TYR MET HIS PRO ALA VAL VAL VAL LYS SER SEQRES 27 A 366 GLY SER GLU ILE PHE MET LYS MET ASP ASN THR LEU GLN SEQRES 28 A 366 SER VAL ALA ASP VAL ASP PRO GLU ASN VAL ASP VAL HIS SEQRES 29 A 366 SER SER HET PLP A 401 15 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 HOH *155(H2 O) HELIX 1 AA1 ALA A 27 GLU A 35 1 9 HELIX 2 AA2 ASN A 44 SER A 50 5 7 HELIX 3 AA3 VAL A 51 GLY A 68 1 18 HELIX 4 AA4 GLY A 78 GLY A 93 1 16 HELIX 5 AA5 ASN A 105 ASP A 115 1 11 HELIX 6 AA6 ASN A 125 LYS A 135 1 11 HELIX 7 AA7 HIS A 149 LEU A 167 1 19 HELIX 8 AA8 GLY A 182 ALA A 195 1 14 HELIX 9 AA9 ASN A 211 GLY A 220 1 10 HELIX 10 AB1 ALA A 232 ILE A 236 5 5 HELIX 11 AB2 SER A 241 HIS A 251 1 11 HELIX 12 AB3 SER A 259 LYS A 275 1 17 HELIX 13 AB4 GLU A 279 THR A 291 1 13 HELIX 14 AB5 HIS A 292 LEU A 298 1 7 HELIX 15 AB6 SER A 318 MET A 330 1 13 SHEET 1 AA1 6 LEU A 24 HIS A 26 0 SHEET 2 AA1 6 ASN A 37 MET A 42 -1 O LEU A 40 N LEU A 25 SHEET 3 AA1 6 ASP A 306 VAL A 311 1 O VAL A 307 N ASN A 37 SHEET 4 AA1 6 ALA A 174 PRO A 178 1 N ILE A 176 O VAL A 308 SHEET 5 AA1 6 VAL A 202 THR A 207 1 O ILE A 203 N CYS A 177 SHEET 6 AA1 6 VAL A 253 VAL A 258 1 O VAL A 254 N VAL A 202 SHEET 1 AA2 4 HIS A 118 LEU A 121 0 SHEET 2 AA2 4 GLU A 95 VAL A 100 1 N ILE A 98 O HIS A 118 SHEET 3 AA2 4 GLN A 72 CYS A 75 1 N PHE A 73 O GLU A 95 SHEET 4 AA2 4 GLY A 141 TYR A 143 1 O ILE A 142 N GLN A 72 LINK NZ LYS A 52 C4A PLP A 401 1555 1555 1.57 SITE 1 AC1 15 LYS A 52 ASN A 80 SER A 147 GLY A 180 SITE 2 AC1 15 GLY A 181 GLY A 182 GLY A 183 LEU A 184 SITE 3 AC1 15 SER A 234 LEU A 235 SER A 281 THR A 312 SITE 4 AC1 15 HOH A 509 HOH A 515 HOH A 517 CRYST1 72.980 72.885 111.121 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013702 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008999 0.00000