data_5C45
#
_entry.id 5C45
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.380
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5C45 pdb_00005c45 10.2210/pdb5c45/pdb
WWPDB D_1000210937 ? ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.details '2YIF contains the same heptamer in apo form'
_pdbx_database_related.db_id 2YIF
_pdbx_database_related.content_type unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5C45
_pdbx_database_status.recvd_initial_deposition_date 2015-06-17
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
_audit_author.name 'Fischmann, T.O.'
_audit_author.pdbx_ordinal 1
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Nature
_citation.journal_id_ASTM NATUAS
_citation.journal_id_CSD 0006
_citation.journal_id_ISSN 1476-4687
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 526
_citation.language ?
_citation.page_first 672
_citation.page_last 677
_citation.title 'Selective small-molecule inhibition of an RNA structural element.'
_citation.year 2015
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1038/nature15542
_citation.pdbx_database_id_PubMed 26416753
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Howe, J.A.' 1 ?
primary 'Wang, H.' 2 ?
primary 'Fischmann, T.O.' 3 ?
primary 'Balibar, C.J.' 4 ?
primary 'Xiao, L.' 5 ?
primary 'Galgoci, A.M.' 6 ?
primary 'Malinverni, J.C.' 7 ?
primary 'Mayhood, T.' 8 ?
primary 'Villafania, A.' 9 ?
primary 'Nahvi, A.' 10 ?
primary 'Murgolo, N.' 11 ?
primary 'Barbieri, C.M.' 12 ?
primary 'Mann, P.A.' 13 ?
primary 'Carr, D.' 14 ?
primary 'Xia, E.' 15 ?
primary 'Zuck, P.' 16 ?
primary 'Riley, D.' 17 ?
primary 'Painter, R.E.' 18 ?
primary 'Walker, S.S.' 19 ?
primary 'Sherborne, B.' 20 ?
primary 'de Jesus, R.' 21 ?
primary 'Pan, W.' 22 ?
primary 'Plotkin, M.A.' 23 ?
primary 'Wu, J.' 24 ?
primary 'Rindgen, D.' 25 ?
primary 'Cummings, J.' 26 ?
primary 'Garlisi, C.G.' 27 ?
primary 'Zhang, R.' 28 ?
primary 'Sheth, P.R.' 29 ?
primary 'Gill, C.J.' 30 ?
primary 'Tang, H.' 31 ?
primary 'Roemer, T.' 32 ?
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 120.00
_cell.angle_gamma_esd ?
_cell.entry_id 5C45
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 71.110
_cell.length_a_esd ?
_cell.length_b 71.110
_cell.length_b_esd ?
_cell.length_c 138.510
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 6
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5C45
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 152
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 31 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'FMN Riboswitch'
17455.389 1 ? ? ? ?
2 polymer syn 'FMN Riboswitch'
18092.771 1 ? ? ? ?
3 non-polymer syn 'POTASSIUM ION' 39.098 6
? ? ? ?
4 non-polymer syn 'MAGNESIUM ION' 24.305 2
? ? ? ?
5 non-polymer syn '(6M)-2-[(3S)-1-{[2-(methylamino)pyrimidin-5-yl]methyl}piperidin-3-yl]-6-(thiophen-2-yl)pyrimidin-4-ol' 382.483
1 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polyribonucleotide no no GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU
GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU X ?
2 polyribonucleotide no no GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC
GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC Y ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 G n
1 2 G n
1 3 A n
1 4 U n
1 5 C n
1 6 U n
1 7 U n
1 8 C n
1 9 G n
1 10 G n
1 11 G n
1 12 G n
1 13 C n
1 14 A n
1 15 G n
1 16 G n
1 17 G n
1 18 U n
1 19 G n
1 20 A n
1 21 A n
1 22 A n
1 23 U n
1 24 U n
1 25 C n
1 26 C n
1 27 C n
1 28 G n
1 29 A n
1 30 C n
1 31 C n
1 32 G n
1 33 G n
1 34 U n
1 35 G n
1 36 G n
1 37 U n
1 38 A n
1 39 U n
1 40 A n
1 41 G n
1 42 U n
1 43 C n
1 44 C n
1 45 A n
1 46 C n
1 47 G n
1 48 A n
1 49 A n
1 50 A n
1 51 G n
1 52 C n
1 53 U n
1 54 U n
2 1 G n
2 2 C n
2 3 U n
2 4 U n
2 5 U n
2 6 G n
2 7 A n
2 8 U n
2 9 U n
2 10 U n
2 11 G n
2 12 G n
2 13 U n
2 14 G n
2 15 A n
2 16 A n
2 17 A n
2 18 U n
2 19 U n
2 20 C n
2 21 C n
2 22 A n
2 23 A n
2 24 A n
2 25 A n
2 26 C n
2 27 C n
2 28 G n
2 29 A n
2 30 C n
2 31 A n
2 32 G n
2 33 U n
2 34 A n
2 35 G n
2 36 A n
2 37 G n
2 38 U n
2 39 C n
2 40 U n
2 41 G n
2 42 G n
2 43 A n
2 44 U n
2 45 G n
2 46 A n
2 47 G n
2 48 A n
2 49 G n
2 50 A n
2 51 A n
2 52 G n
2 53 A n
2 54 U n
2 55 U n
2 56 C n
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
1 1 sample 1 54 'Fusobacterium nucleatum' ? 851 ?
2 1 sample 1 56 'Fusobacterium nucleatum' ? 851 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 GB AE009951.2 20095250 ? 1 AUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAG 2495
2 GB AE009951.2 20095250 ? 2 GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGA 2549
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 5C45 X 3 ? 51 ? 20095250 2495 ? 2543 ? 3 51
2 2 5C45 Y 1 ? 53 ? 20095250 2549 ? 2601 ? 57 109
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 5C45 G X 1 ? GB 20095250 ? ? insertion 1 1
1 5C45 G X 2 ? GB 20095250 ? ? insertion 2 2
1 5C45 C X 52 ? GB 20095250 ? ? insertion 52 3
1 5C45 U X 53 ? GB 20095250 ? ? insertion 53 4
1 5C45 U X 54 ? GB 20095250 ? ? insertion 54 5
2 5C45 U Y 54 ? GB 20095250 ? ? insertion 110 6
2 5C45 U Y 55 ? GB 20095250 ? ? insertion 111 7
2 5C45 C Y 56 ? GB 20095250 ? ? insertion 112 8
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
51B non-polymer . '(6M)-2-[(3S)-1-{[2-(methylamino)pyrimidin-5-yl]methyl}piperidin-3-yl]-6-(thiophen-2-yl)pyrimidin-4-ol' ?
'C19 H22 N6 O S' 382.483
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O7 P' 347.221
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ?
'C9 H14 N3 O8 P' 323.197
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O8 P' 363.221
K non-polymer . 'POTASSIUM ION' ?
'K 1' 39.098
MG non-polymer . 'MAGNESIUM ION' ?
'Mg 2' 24.305
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ?
'C9 H13 N2 O9 P' 324.181
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5C45
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.84
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 56.75
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 5.0
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '0.1 M Na Acetate, pH 5.0, 0.2 M MgCl2, and 7 to 11% v/v PEG 4K'
_exptl_crystal_grow.pdbx_pH_range 4.5-6.8
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS PILATUS 6M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2014-07-25
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'APS BEAMLINE 17-ID'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 17-ID
_diffrn_source.pdbx_synchrotron_site APS
#
_reflns.B_iso_Wilson_estimate 109.83
_reflns.entry_id 5C45
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 2.928
_reflns.d_resolution_low 35.6
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 9222
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F 0
_reflns.observed_criterion_sigma_I -3
_reflns.percent_possible_obs 100
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 7.0
_reflns.pdbx_Rmerge_I_obs 0.019
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 36.2
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_R_split ?
#
_reflns_shell.d_res_high 2.928
_reflns_shell.d_res_low 2.938
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs 2.4
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs ?
_reflns_shell.percent_possible_all 100
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs 1.16
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy 9.9
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half ?
_reflns_shell.pdbx_R_split ?
#
_refine.aniso_B[1][1] 6.9460
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][2] 6.9460
_refine.aniso_B[2][3] 0.0000
_refine.aniso_B[3][3] -13.8920
_refine.B_iso_max ?
_refine.B_iso_mean 103.14
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc 0.9377
_refine.correlation_coeff_Fo_to_Fc_free 0.9218
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 5C45
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 2.93
_refine.ls_d_res_low 35.56
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 9179
_refine.ls_number_reflns_R_free 442
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 99.97
_refine.ls_percent_reflns_R_free 4.82
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2138
_refine.ls_R_factor_R_free 0.2343
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2128
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 3F4E
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI 0.362
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_analyze.entry_id 5C45
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_coordinate_error_obs 0.485
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_sigma_a_free_details ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_sigma_a_obs_details ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.RG_d_res_high ?
_refine_analyze.RG_d_res_low ?
_refine_analyze.RG_free ?
_refine_analyze.RG_work ?
_refine_analyze.RG_free_work_ratio ?
_refine_analyze.pdbx_Luzzati_d_res_high_obs ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id 1
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 2340
_refine_hist.pdbx_number_atoms_ligand 35
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 2375
_refine_hist.d_res_high 2.93
_refine_hist.d_res_low 35.56
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.010 ? 2649 ? t_bond_d 2.00 HARMONIC
'X-RAY DIFFRACTION' ? 0.74 ? 4123 ? t_angle_deg 2.00 HARMONIC
'X-RAY DIFFRACTION' ? ? ? 551 ? t_dihedral_angle_d 2.00 SINUSOIDAL
'X-RAY DIFFRACTION' ? ? ? ? ? t_incorr_chiral_ct ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ?
'X-RAY DIFFRACTION' ? ? ? 112 ? t_gen_planes 5.00 HARMONIC
'X-RAY DIFFRACTION' ? ? ? 2649 ? t_it 20.00 HARMONIC
'X-RAY DIFFRACTION' ? ? ? 0 ? t_nbd 5.00 SEMIHARMONIC
'X-RAY DIFFRACTION' ? ? ? ? ? t_omega_torsion ? ?
'X-RAY DIFFRACTION' ? 23.60 ? ? ? t_other_torsion ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ?
'X-RAY DIFFRACTION' ? ? ? 436 ? t_chiral_improper_torsion 5.00 SEMIHARMONIC
'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ?
'X-RAY DIFFRACTION' ? ? ? 2634 ? t_ideal_dist_contact 4.00 SEMIHARMONIC
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 2.93
_refine_ls_shell.d_res_low 3.28
_refine_ls_shell.number_reflns_all 2528
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 126
_refine_ls_shell.number_reflns_R_work 2402
_refine_ls_shell.percent_reflns_obs 99.97
_refine_ls_shell.percent_reflns_R_free 4.98
_refine_ls_shell.R_factor_all 0.2522
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.2705
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.R_factor_R_work 0.2513
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 5C45
_struct.title 'Selective Small Molecule Inhibition of the FMN Riboswitch'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag ?
#
_struct_keywords.entry_id 5C45
_struct_keywords.text 'RNA, TRANSLATION, RNA-INHIBITOR complex'
_struct_keywords.pdbx_keywords RNA/INHIBITOR
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 3 ?
F N N 3 ?
G N N 5 ?
H N N 3 ?
I N N 4 ?
J N N 3 ?
K N N 3 ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A A 14 OP2 ? ? ? 1_555 D MG . MG ? ? X A 14 X MG 102 1_555 ? ? ? ? ? ? ? 2.305 ? ?
metalc2 metalc ? ? A G 16 OP2 ? ? ? 1_555 E K . K ? ? X G 16 X K 103 1_555 ? ? ? ? ? ? ? 3.388 ? ?
metalc3 metalc ? ? A A 40 "O2'" ? ? ? 1_555 C K . K ? ? X A 40 X K 101 1_555 ? ? ? ? ? ? ? 3.308 ? ?
metalc4 metalc ? ? B U 33 O4 ? ? ? 1_555 I MG . MG ? ? Y U 89 Y MG 302 1_555 ? ? ? ? ? ? ? 2.045 ? ?
metalc5 metalc ? ? B A 34 OP2 ? ? ? 1_555 K K . K ? ? Y A 90 Y K 304 1_555 ? ? ? ? ? ? ? 3.151 ? ?
metalc6 metalc ? ? B G 35 OP1 ? ? ? 1_555 K K . K ? ? Y G 91 Y K 304 1_555 ? ? ? ? ? ? ? 2.824 ? ?
metalc7 metalc ? ? B A 36 OP2 ? ? ? 1_555 I MG . MG ? ? Y A 92 Y MG 302 1_555 ? ? ? ? ? ? ? 2.415 ? ?
metalc8 metalc ? ? B G 41 O6 ? ? ? 1_555 H K . K ? ? Y G 97 Y K 301 1_555 ? ? ? ? ? ? ? 3.306 ? ?
hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 56 N3 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ?
hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 55 O2 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 B U 55 N3 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 54 N3 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 54 O4 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 53 N1 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 53 N6 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 52 N1 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 52 O6 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 52 N2 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 51 N1 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 51 N6 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 50 N1 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 50 N6 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 49 N1 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 49 O6 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 49 N2 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 B A 48 N7 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog19 hydrog ? ? A G 9 N3 ? ? ? 1_555 B A 48 N6 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog20 hydrog ? ? A G 10 N7 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ?
hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N1 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ?
hydrog22 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 11 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ?
hydrog23 hydrog ? ? A G 12 N2 ? ? ? 1_555 B G 37 N3 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog24 hydrog ? ? A G 12 N3 ? ? ? 1_555 B G 37 N2 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog25 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ?
hydrog26 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog27 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog28 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog33 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog34 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog35 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog36 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog37 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog38 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog39 hydrog ? ? A A 29 N1 ? ? ? 1_555 B U 38 N3 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog40 hydrog ? ? A A 29 N6 ? ? ? 1_555 B U 38 O4 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog41 hydrog ? ? A C 30 N3 ? ? ? 1_555 B G 37 N1 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog42 hydrog ? ? A C 30 N4 ? ? ? 1_555 B G 37 O6 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog43 hydrog ? ? A C 30 O2 ? ? ? 1_555 B G 37 N2 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog44 hydrog ? ? A C 31 N3 ? ? ? 1_555 B G 28 N1 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog45 hydrog ? ? A C 31 N4 ? ? ? 1_555 B G 28 O6 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog46 hydrog ? ? A C 31 O2 ? ? ? 1_555 B G 28 N2 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog47 hydrog ? ? A G 32 N1 ? ? ? 1_555 B C 27 N3 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog48 hydrog ? ? A G 32 N2 ? ? ? 1_555 B C 27 O2 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog49 hydrog ? ? A G 32 O6 ? ? ? 1_555 B C 27 N4 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog50 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog51 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog52 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog53 hydrog ? ? A G 33 N2 ? ? ? 1_555 B A 48 N3 ? ? X G 33 Y A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ?
hydrog54 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog55 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog56 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog57 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog58 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog59 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog60 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog61 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog62 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog63 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog64 hydrog ? ? A A 38 N6 ? ? ? 1_555 B G 14 N3 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog65 hydrog ? ? A A 38 N7 ? ? ? 1_555 B G 14 N2 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog66 hydrog ? ? A G 41 N2 ? ? ? 1_555 B A 7 N3 ? ? X G 41 Y A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ?
hydrog67 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 26 N3 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog68 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 26 O2 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog69 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 26 N4 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog70 hydrog ? ? A U 42 N3 ? ? ? 1_555 B A 25 N1 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog71 hydrog ? ? A U 42 O4 ? ? ? 1_555 B A 25 N6 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog72 hydrog ? ? A A 49 N1 ? ? ? 1_555 B U 4 N3 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog73 hydrog ? ? A A 49 N6 ? ? ? 1_555 B U 4 O4 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog74 hydrog ? ? A A 50 N1 ? ? ? 1_555 B U 3 N3 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog75 hydrog ? ? A A 50 N6 ? ? ? 1_555 B U 3 O4 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog76 hydrog ? ? A G 51 N1 ? ? ? 1_555 B C 2 N3 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog77 hydrog ? ? A G 51 N2 ? ? ? 1_555 B C 2 O2 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog78 hydrog ? ? A G 51 O6 ? ? ? 1_555 B C 2 N4 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog79 hydrog ? ? A C 52 N3 ? ? ? 1_555 B G 1 N1 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog80 hydrog ? ? A C 52 N4 ? ? ? 1_555 B G 1 O6 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog81 hydrog ? ? A C 52 O2 ? ? ? 1_555 B G 1 N2 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog82 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 24 N1 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ?
hydrog83 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 23 N1 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog84 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 23 N6 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog85 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 22 N1 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog86 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 22 N6 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog87 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 21 N3 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog88 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 21 O2 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog89 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 21 N4 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog90 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 20 N3 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog91 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 20 O2 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog92 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 20 N4 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog93 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 17 N7 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog94 hydrog ? ? B U 13 O2 ? ? ? 1_555 B A 17 N6 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog95 hydrog ? ? B A 29 N1 ? ? ? 1_555 B G 42 N1 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ?
hydrog96 hydrog ? ? B A 29 N6 ? ? ? 1_555 B G 42 O6 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ?
hydrog97 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 41 N1 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog98 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 41 O6 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog99 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 41 N2 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog100 hydrog ? ? B A 31 N1 ? ? ? 1_555 B U 40 N3 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog101 hydrog ? ? B A 31 N6 ? ? ? 1_555 B U 40 O4 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog102 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 39 N3 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog103 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 39 O2 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog104 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 39 N4 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog105 hydrog ? ? B U 33 N3 ? ? ? 1_555 B A 36 N7 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog106 hydrog ? ? B U 33 O2 ? ? ? 1_555 B A 36 N6 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software X K 101 ? 1 'binding site for residue K X 101'
AC2 Software X MG 102 ? 1 'binding site for residue MG X 102'
AC3 Software X K 103 ? 1 'binding site for residue K X 103'
AC4 Software X 51B 105 ? 8 'binding site for residue 51B X 105'
AC5 Software Y K 301 ? 1 'binding site for residue K Y 301'
AC6 Software Y MG 302 ? 3 'binding site for residue MG Y 302'
AC7 Software Y K 303 ? 2 'binding site for residue K Y 303'
AC8 Software Y K 304 ? 2 'binding site for residue K Y 304'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 1 A A 40 ? A X 40 . ? 1_555 ?
2 AC2 1 A A 14 ? A X 14 . ? 1_555 ?
3 AC3 1 G A 16 ? G X 16 . ? 1_555 ?
4 AC4 8 G A 10 ? G X 10 . ? 1_555 ?
5 AC4 8 G A 11 ? G X 11 . ? 1_555 ?
6 AC4 8 A A 48 ? A X 48 . ? 1_555 ?
7 AC4 8 A A 49 ? A X 49 . ? 1_555 ?
8 AC4 8 G B 6 ? G Y 62 . ? 1_555 ?
9 AC4 8 G B 28 ? G Y 84 . ? 1_555 ?
10 AC4 8 A B 29 ? A Y 85 . ? 1_555 ?
11 AC4 8 A B 43 ? A Y 99 . ? 1_555 ?
12 AC5 1 G B 41 ? G Y 97 . ? 1_555 ?
13 AC6 3 G B 32 ? G Y 88 . ? 1_555 ?
14 AC6 3 U B 33 ? U Y 89 . ? 1_555 ?
15 AC6 3 A B 36 ? A Y 92 . ? 1_555 ?
16 AC7 2 G B 11 ? G Y 67 . ? 1_555 ?
17 AC7 2 G B 12 ? G Y 68 . ? 1_555 ?
18 AC8 2 A B 34 ? A Y 90 . ? 1_555 ?
19 AC8 2 G B 35 ? G Y 91 . ? 1_555 ?
#
_atom_sites.entry_id 5C45
_atom_sites.fract_transf_matrix[1][1] 0.014063
_atom_sites.fract_transf_matrix[1][2] 0.008119
_atom_sites.fract_transf_matrix[1][3] -0.000000
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.016238
_atom_sites.fract_transf_matrix[2][3] -0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.007220
_atom_sites.fract_transf_vector[1] -0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] -0.00000
#
loop_
_atom_type.symbol
C
K
MG
N
O
P
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 G 1 1 1 G G X . n
A 1 2 G 2 2 2 G G X . n
A 1 3 A 3 3 3 A A X . n
A 1 4 U 4 4 4 U U X . n
A 1 5 C 5 5 5 C C X . n
A 1 6 U 6 6 6 U U X . n
A 1 7 U 7 7 7 U U X . n
A 1 8 C 8 8 8 C C X . n
A 1 9 G 9 9 9 G G X . n
A 1 10 G 10 10 10 G G X . n
A 1 11 G 11 11 11 G G X . n
A 1 12 G 12 12 12 G G X . n
A 1 13 C 13 13 13 C C X . n
A 1 14 A 14 14 14 A A X . n
A 1 15 G 15 15 15 G G X . n
A 1 16 G 16 16 16 G G X . n
A 1 17 G 17 17 17 G G X . n
A 1 18 U 18 18 18 U U X . n
A 1 19 G 19 19 19 G G X . n
A 1 20 A 20 20 20 A A X . n
A 1 21 A 21 21 21 A A X . n
A 1 22 A 22 22 22 A A X . n
A 1 23 U 23 23 23 U U X . n
A 1 24 U 24 24 24 U U X . n
A 1 25 C 25 25 25 C C X . n
A 1 26 C 26 26 26 C C X . n
A 1 27 C 27 27 27 C C X . n
A 1 28 G 28 28 28 G G X . n
A 1 29 A 29 29 29 A A X . n
A 1 30 C 30 30 30 C C X . n
A 1 31 C 31 31 31 C C X . n
A 1 32 G 32 32 32 G G X . n
A 1 33 G 33 33 33 G G X . n
A 1 34 U 34 34 34 U U X . n
A 1 35 G 35 35 35 G G X . n
A 1 36 G 36 36 36 G G X . n
A 1 37 U 37 37 37 U U X . n
A 1 38 A 38 38 38 A A X . n
A 1 39 U 39 39 39 U U X . n
A 1 40 A 40 40 40 A A X . n
A 1 41 G 41 41 41 G G X . n
A 1 42 U 42 42 42 U U X . n
A 1 43 C 43 43 43 C C X . n
A 1 44 C 44 44 44 C C X . n
A 1 45 A 45 45 45 A A X . n
A 1 46 C 46 46 46 C C X . n
A 1 47 G 47 47 47 G G X . n
A 1 48 A 48 48 48 A A X . n
A 1 49 A 49 49 49 A A X . n
A 1 50 A 50 50 50 A A X . n
A 1 51 G 51 51 51 G G X . n
A 1 52 C 52 52 52 C C X . n
A 1 53 U 53 53 53 U U X . n
A 1 54 U 54 54 54 U U X . n
B 2 1 G 1 57 57 G G Y . n
B 2 2 C 2 58 58 C C Y . n
B 2 3 U 3 59 59 U U Y . n
B 2 4 U 4 60 60 U U Y . n
B 2 5 U 5 61 61 U U Y . n
B 2 6 G 6 62 62 G G Y . n
B 2 7 A 7 63 63 A A Y . n
B 2 8 U 8 64 64 U U Y . n
B 2 9 U 9 65 65 U U Y . n
B 2 10 U 10 66 66 U U Y . n
B 2 11 G 11 67 67 G G Y . n
B 2 12 G 12 68 68 G G Y . n
B 2 13 U 13 69 69 U U Y . n
B 2 14 G 14 70 70 G G Y . n
B 2 15 A 15 71 71 A A Y . n
B 2 16 A 16 72 72 A A Y . n
B 2 17 A 17 73 73 A A Y . n
B 2 18 U 18 74 74 U U Y . n
B 2 19 U 19 75 75 U U Y . n
B 2 20 C 20 76 76 C C Y . n
B 2 21 C 21 77 77 C C Y . n
B 2 22 A 22 78 78 A A Y . n
B 2 23 A 23 79 79 A A Y . n
B 2 24 A 24 80 80 A A Y . n
B 2 25 A 25 81 81 A A Y . n
B 2 26 C 26 82 82 C C Y . n
B 2 27 C 27 83 83 C C Y . n
B 2 28 G 28 84 84 G G Y . n
B 2 29 A 29 85 85 A A Y . n
B 2 30 C 30 86 86 C C Y . n
B 2 31 A 31 87 87 A A Y . n
B 2 32 G 32 88 88 G G Y . n
B 2 33 U 33 89 89 U U Y . n
B 2 34 A 34 90 90 A A Y . n
B 2 35 G 35 91 91 G G Y . n
B 2 36 A 36 92 92 A A Y . n
B 2 37 G 37 93 93 G G Y . n
B 2 38 U 38 94 94 U U Y . n
B 2 39 C 39 95 95 C C Y . n
B 2 40 U 40 96 96 U U Y . n
B 2 41 G 41 97 97 G G Y . n
B 2 42 G 42 98 98 G G Y . n
B 2 43 A 43 99 99 A A Y . n
B 2 44 U 44 100 100 U U Y . n
B 2 45 G 45 101 101 G G Y . n
B 2 46 A 46 102 102 A A Y . n
B 2 47 G 47 103 103 G G Y . n
B 2 48 A 48 104 104 A A Y . n
B 2 49 G 49 105 105 G G Y . n
B 2 50 A 50 106 106 A A Y . n
B 2 51 A 51 107 107 A A Y . n
B 2 52 G 52 108 108 G G Y . n
B 2 53 A 53 109 109 A A Y . n
B 2 54 U 54 110 110 U U Y . n
B 2 55 U 55 111 111 U U Y . n
B 2 56 C 56 112 112 C C Y . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 K 1 101 300 K K X .
D 4 MG 1 102 306 MG MG X .
E 3 K 1 103 307 K K X .
F 3 K 1 104 311 K K X .
G 5 51B 1 105 1 51B SCH X .
H 3 K 1 301 301 K K Y .
I 4 MG 1 302 305 MG MG Y .
J 3 K 1 303 309 K K Y .
K 3 K 1 304 999 K K Y .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 7290 ?
1 MORE -39 ?
1 'SSA (A^2)' 16100 ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O4 ? B U 33 ? Y U 89 ? 1_555 MG ? I MG . ? Y MG 302 ? 1_555 OP2 ? B A 36 ? Y A 92 ? 1_555 91.9 ?
2 OP2 ? B A 34 ? Y A 90 ? 1_555 K ? K K . ? Y K 304 ? 1_555 OP1 ? B G 35 ? Y G 91 ? 1_555 68.3 ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2015-10-07
2 'Structure model' 1 1 2015-10-14
3 'Structure model' 1 2 2015-11-11
4 'Structure model' 1 3 2023-03-01
5 'Structure model' 1 4 2023-10-25
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Database references'
3 4 'Structure model' 'Database references'
4 4 'Structure model' 'Derived calculations'
5 4 'Structure model' 'Structure summary'
6 5 'Structure model' 'Data collection'
7 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp
2 4 'Structure model' citation
3 4 'Structure model' database_2
4 4 'Structure model' entity
5 4 'Structure model' pdbx_entity_nonpoly
6 4 'Structure model' pdbx_struct_oper_list
7 4 'Structure model' struct_ref_seq_dif
8 5 'Structure model' chem_comp_atom
9 5 'Structure model' chem_comp_bond
10 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_chem_comp.name'
2 4 'Structure model' '_citation.journal_id_CSD'
3 4 'Structure model' '_database_2.pdbx_DOI'
4 4 'Structure model' '_database_2.pdbx_database_accession'
5 4 'Structure model' '_entity.pdbx_description'
6 4 'Structure model' '_pdbx_entity_nonpoly.name'
7 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation'
8 4 'Structure model' '_struct_ref_seq_dif.details'
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.11.5 1
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3
? phasing ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? . 4
#
_pdbx_validate_planes.id 1
_pdbx_validate_planes.PDB_model_num 1
_pdbx_validate_planes.auth_comp_id G
_pdbx_validate_planes.auth_asym_id X
_pdbx_validate_planes.auth_seq_id 11
_pdbx_validate_planes.PDB_ins_code ?
_pdbx_validate_planes.label_alt_id ?
_pdbx_validate_planes.rmsd 0.052
_pdbx_validate_planes.type 'SIDE CHAIN'
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 X U 54 ? "C5'" ? A U 54 "C5'"
2 1 Y 1 X U 54 ? "C4'" ? A U 54 "C4'"
3 1 Y 1 X U 54 ? "O4'" ? A U 54 "O4'"
4 1 Y 1 X U 54 ? "C3'" ? A U 54 "C3'"
5 1 Y 1 X U 54 ? "O3'" ? A U 54 "O3'"
6 1 Y 1 X U 54 ? "C2'" ? A U 54 "C2'"
7 1 Y 1 X U 54 ? "O2'" ? A U 54 "O2'"
8 1 Y 1 X U 54 ? "C1'" ? A U 54 "C1'"
9 1 Y 1 X U 54 ? N1 ? A U 54 N1
10 1 Y 1 X U 54 ? C2 ? A U 54 C2
11 1 Y 1 X U 54 ? O2 ? A U 54 O2
12 1 Y 1 X U 54 ? N3 ? A U 54 N3
13 1 Y 1 X U 54 ? C4 ? A U 54 C4
14 1 Y 1 X U 54 ? O4 ? A U 54 O4
15 1 Y 1 X U 54 ? C5 ? A U 54 C5
16 1 Y 1 X U 54 ? C6 ? A U 54 C6
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
51B N01 N Y N 1
51B C02 C Y N 2
51B N03 N Y N 3
51B C04 C Y N 4
51B C05 C Y N 5
51B C06 C Y N 6
51B O07 O N N 7
51B C08 C N S 8
51B C09 C N N 9
51B N10 N N N 10
51B C11 C N N 11
51B C12 C N N 12
51B C13 C N N 13
51B C14 C Y N 14
51B S15 S Y N 15
51B C16 C Y N 16
51B C17 C Y N 17
51B C18 C Y N 18
51B C19 C N N 19
51B C20 C Y N 20
51B C21 C Y N 21
51B N22 N Y N 22
51B C23 C Y N 23
51B N24 N Y N 24
51B C25 C Y N 25
51B N26 N N N 26
51B C27 C N N 27
51B H1 H N N 28
51B H3 H N N 29
51B H4 H N N 30
51B H5 H N N 31
51B H7 H N N 32
51B H8 H N N 33
51B H9 H N N 34
51B H10 H N N 35
51B H11 H N N 36
51B H12 H N N 37
51B H13 H N N 38
51B H14 H N N 39
51B H15 H N N 40
51B H16 H N N 41
51B H17 H N N 42
51B H18 H N N 43
51B H19 H N N 44
51B H20 H N N 45
51B H21 H N N 46
51B H22 H N N 47
51B H23 H N N 48
51B H2 H N N 49
A OP3 O N N 50
A P P N N 51
A OP1 O N N 52
A OP2 O N N 53
A "O5'" O N N 54
A "C5'" C N N 55
A "C4'" C N R 56
A "O4'" O N N 57
A "C3'" C N S 58
A "O3'" O N N 59
A "C2'" C N R 60
A "O2'" O N N 61
A "C1'" C N R 62
A N9 N Y N 63
A C8 C Y N 64
A N7 N Y N 65
A C5 C Y N 66
A C6 C Y N 67
A N6 N N N 68
A N1 N Y N 69
A C2 C Y N 70
A N3 N Y N 71
A C4 C Y N 72
A HOP3 H N N 73
A HOP2 H N N 74
A "H5'" H N N 75
A "H5''" H N N 76
A "H4'" H N N 77
A "H3'" H N N 78
A "HO3'" H N N 79
A "H2'" H N N 80
A "HO2'" H N N 81
A "H1'" H N N 82
A H8 H N N 83
A H61 H N N 84
A H62 H N N 85
A H2 H N N 86
C OP3 O N N 87
C P P N N 88
C OP1 O N N 89
C OP2 O N N 90
C "O5'" O N N 91
C "C5'" C N N 92
C "C4'" C N R 93
C "O4'" O N N 94
C "C3'" C N S 95
C "O3'" O N N 96
C "C2'" C N R 97
C "O2'" O N N 98
C "C1'" C N R 99
C N1 N N N 100
C C2 C N N 101
C O2 O N N 102
C N3 N N N 103
C C4 C N N 104
C N4 N N N 105
C C5 C N N 106
C C6 C N N 107
C HOP3 H N N 108
C HOP2 H N N 109
C "H5'" H N N 110
C "H5''" H N N 111
C "H4'" H N N 112
C "H3'" H N N 113
C "HO3'" H N N 114
C "H2'" H N N 115
C "HO2'" H N N 116
C "H1'" H N N 117
C H41 H N N 118
C H42 H N N 119
C H5 H N N 120
C H6 H N N 121
G OP3 O N N 122
G P P N N 123
G OP1 O N N 124
G OP2 O N N 125
G "O5'" O N N 126
G "C5'" C N N 127
G "C4'" C N R 128
G "O4'" O N N 129
G "C3'" C N S 130
G "O3'" O N N 131
G "C2'" C N R 132
G "O2'" O N N 133
G "C1'" C N R 134
G N9 N Y N 135
G C8 C Y N 136
G N7 N Y N 137
G C5 C Y N 138
G C6 C N N 139
G O6 O N N 140
G N1 N N N 141
G C2 C N N 142
G N2 N N N 143
G N3 N N N 144
G C4 C Y N 145
G HOP3 H N N 146
G HOP2 H N N 147
G "H5'" H N N 148
G "H5''" H N N 149
G "H4'" H N N 150
G "H3'" H N N 151
G "HO3'" H N N 152
G "H2'" H N N 153
G "HO2'" H N N 154
G "H1'" H N N 155
G H8 H N N 156
G H1 H N N 157
G H21 H N N 158
G H22 H N N 159
K K K N N 160
MG MG MG N N 161
U OP3 O N N 162
U P P N N 163
U OP1 O N N 164
U OP2 O N N 165
U "O5'" O N N 166
U "C5'" C N N 167
U "C4'" C N R 168
U "O4'" O N N 169
U "C3'" C N S 170
U "O3'" O N N 171
U "C2'" C N R 172
U "O2'" O N N 173
U "C1'" C N R 174
U N1 N N N 175
U C2 C N N 176
U O2 O N N 177
U N3 N N N 178
U C4 C N N 179
U O4 O N N 180
U C5 C N N 181
U C6 C N N 182
U HOP3 H N N 183
U HOP2 H N N 184
U "H5'" H N N 185
U "H5''" H N N 186
U "H4'" H N N 187
U "H3'" H N N 188
U "HO3'" H N N 189
U "H2'" H N N 190
U "HO2'" H N N 191
U "H1'" H N N 192
U H3 H N N 193
U H5 H N N 194
U H6 H N N 195
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
51B C12 C11 sing N N 1
51B C12 C13 sing N N 2
51B C11 N10 sing N N 3
51B C13 C08 sing N N 4
51B N10 C19 sing N N 5
51B N10 C09 sing N N 6
51B C08 C09 sing N N 7
51B C08 C02 sing N N 8
51B C19 C20 sing N N 9
51B N01 C02 doub Y N 10
51B N01 C06 sing Y N 11
51B C02 N03 sing Y N 12
51B O07 C06 sing N N 13
51B C06 C05 doub Y N 14
51B C20 C25 doub Y N 15
51B C20 C21 sing Y N 16
51B C25 N24 sing Y N 17
51B N03 C04 doub Y N 18
51B C21 N22 doub Y N 19
51B C05 C04 sing Y N 20
51B C04 C14 sing N N 21
51B N24 C23 doub Y N 22
51B N22 C23 sing Y N 23
51B C23 N26 sing N N 24
51B C14 S15 sing Y N 25
51B C14 C18 doub Y N 26
51B S15 C16 sing Y N 27
51B N26 C27 sing N N 28
51B C18 C17 sing Y N 29
51B C16 C17 doub Y N 30
51B C05 H1 sing N N 31
51B C08 H3 sing N N 32
51B C09 H4 sing N N 33
51B C09 H5 sing N N 34
51B C11 H7 sing N N 35
51B C11 H8 sing N N 36
51B C12 H9 sing N N 37
51B C12 H10 sing N N 38
51B C13 H11 sing N N 39
51B C13 H12 sing N N 40
51B C16 H13 sing N N 41
51B C17 H14 sing N N 42
51B C18 H15 sing N N 43
51B C19 H16 sing N N 44
51B C19 H17 sing N N 45
51B C21 H18 sing N N 46
51B C25 H19 sing N N 47
51B N26 H20 sing N N 48
51B C27 H21 sing N N 49
51B C27 H22 sing N N 50
51B C27 H23 sing N N 51
51B O07 H2 sing N N 52
A OP3 P sing N N 53
A OP3 HOP3 sing N N 54
A P OP1 doub N N 55
A P OP2 sing N N 56
A P "O5'" sing N N 57
A OP2 HOP2 sing N N 58
A "O5'" "C5'" sing N N 59
A "C5'" "C4'" sing N N 60
A "C5'" "H5'" sing N N 61
A "C5'" "H5''" sing N N 62
A "C4'" "O4'" sing N N 63
A "C4'" "C3'" sing N N 64
A "C4'" "H4'" sing N N 65
A "O4'" "C1'" sing N N 66
A "C3'" "O3'" sing N N 67
A "C3'" "C2'" sing N N 68
A "C3'" "H3'" sing N N 69
A "O3'" "HO3'" sing N N 70
A "C2'" "O2'" sing N N 71
A "C2'" "C1'" sing N N 72
A "C2'" "H2'" sing N N 73
A "O2'" "HO2'" sing N N 74
A "C1'" N9 sing N N 75
A "C1'" "H1'" sing N N 76
A N9 C8 sing Y N 77
A N9 C4 sing Y N 78
A C8 N7 doub Y N 79
A C8 H8 sing N N 80
A N7 C5 sing Y N 81
A C5 C6 sing Y N 82
A C5 C4 doub Y N 83
A C6 N6 sing N N 84
A C6 N1 doub Y N 85
A N6 H61 sing N N 86
A N6 H62 sing N N 87
A N1 C2 sing Y N 88
A C2 N3 doub Y N 89
A C2 H2 sing N N 90
A N3 C4 sing Y N 91
C OP3 P sing N N 92
C OP3 HOP3 sing N N 93
C P OP1 doub N N 94
C P OP2 sing N N 95
C P "O5'" sing N N 96
C OP2 HOP2 sing N N 97
C "O5'" "C5'" sing N N 98
C "C5'" "C4'" sing N N 99
C "C5'" "H5'" sing N N 100
C "C5'" "H5''" sing N N 101
C "C4'" "O4'" sing N N 102
C "C4'" "C3'" sing N N 103
C "C4'" "H4'" sing N N 104
C "O4'" "C1'" sing N N 105
C "C3'" "O3'" sing N N 106
C "C3'" "C2'" sing N N 107
C "C3'" "H3'" sing N N 108
C "O3'" "HO3'" sing N N 109
C "C2'" "O2'" sing N N 110
C "C2'" "C1'" sing N N 111
C "C2'" "H2'" sing N N 112
C "O2'" "HO2'" sing N N 113
C "C1'" N1 sing N N 114
C "C1'" "H1'" sing N N 115
C N1 C2 sing N N 116
C N1 C6 sing N N 117
C C2 O2 doub N N 118
C C2 N3 sing N N 119
C N3 C4 doub N N 120
C C4 N4 sing N N 121
C C4 C5 sing N N 122
C N4 H41 sing N N 123
C N4 H42 sing N N 124
C C5 C6 doub N N 125
C C5 H5 sing N N 126
C C6 H6 sing N N 127
G OP3 P sing N N 128
G OP3 HOP3 sing N N 129
G P OP1 doub N N 130
G P OP2 sing N N 131
G P "O5'" sing N N 132
G OP2 HOP2 sing N N 133
G "O5'" "C5'" sing N N 134
G "C5'" "C4'" sing N N 135
G "C5'" "H5'" sing N N 136
G "C5'" "H5''" sing N N 137
G "C4'" "O4'" sing N N 138
G "C4'" "C3'" sing N N 139
G "C4'" "H4'" sing N N 140
G "O4'" "C1'" sing N N 141
G "C3'" "O3'" sing N N 142
G "C3'" "C2'" sing N N 143
G "C3'" "H3'" sing N N 144
G "O3'" "HO3'" sing N N 145
G "C2'" "O2'" sing N N 146
G "C2'" "C1'" sing N N 147
G "C2'" "H2'" sing N N 148
G "O2'" "HO2'" sing N N 149
G "C1'" N9 sing N N 150
G "C1'" "H1'" sing N N 151
G N9 C8 sing Y N 152
G N9 C4 sing Y N 153
G C8 N7 doub Y N 154
G C8 H8 sing N N 155
G N7 C5 sing Y N 156
G C5 C6 sing N N 157
G C5 C4 doub Y N 158
G C6 O6 doub N N 159
G C6 N1 sing N N 160
G N1 C2 sing N N 161
G N1 H1 sing N N 162
G C2 N2 sing N N 163
G C2 N3 doub N N 164
G N2 H21 sing N N 165
G N2 H22 sing N N 166
G N3 C4 sing N N 167
U OP3 P sing N N 168
U OP3 HOP3 sing N N 169
U P OP1 doub N N 170
U P OP2 sing N N 171
U P "O5'" sing N N 172
U OP2 HOP2 sing N N 173
U "O5'" "C5'" sing N N 174
U "C5'" "C4'" sing N N 175
U "C5'" "H5'" sing N N 176
U "C5'" "H5''" sing N N 177
U "C4'" "O4'" sing N N 178
U "C4'" "C3'" sing N N 179
U "C4'" "H4'" sing N N 180
U "O4'" "C1'" sing N N 181
U "C3'" "O3'" sing N N 182
U "C3'" "C2'" sing N N 183
U "C3'" "H3'" sing N N 184
U "O3'" "HO3'" sing N N 185
U "C2'" "O2'" sing N N 186
U "C2'" "C1'" sing N N 187
U "C2'" "H2'" sing N N 188
U "O2'" "HO2'" sing N N 189
U "C1'" N1 sing N N 190
U "C1'" "H1'" sing N N 191
U N1 C2 sing N N 192
U N1 C6 sing N N 193
U C2 O2 doub N N 194
U C2 N3 sing N N 195
U N3 C4 sing N N 196
U N3 H3 sing N N 197
U C4 O4 doub N N 198
U C4 C5 sing N N 199
U C5 C6 doub N N 200
U C5 H5 sing N N 201
U C6 H6 sing N N 202
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
5C45 'double helix'
5C45 'a-form double helix'
5C45 'hairpin loop'
5C45 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A G 1 1_555 B C 56 1_555 1.197 0.061 0.500 -5.075 -20.575 -17.441 1 X_G1:C112_Y X 1 ? Y 112 ? ? 1
1 A G 2 1_555 B U 55 1_555 -0.995 -0.027 0.286 -0.720 -17.466 -1.523 2 X_G2:U111_Y X 2 ? Y 111 ? 28 1
1 A A 3 1_555 B U 54 1_555 -0.544 -0.128 0.145 -3.036 -22.309 -2.445 3 X_A3:U110_Y X 3 ? Y 110 ? 20 1
1 A U 4 1_555 B A 53 1_555 0.379 -0.056 0.315 -1.233 -20.577 2.836 4 X_U4:A109_Y X 4 ? Y 109 ? 20 1
1 A C 5 1_555 B G 52 1_555 1.127 -0.399 0.375 -1.570 -13.976 -1.794 5 X_C5:G108_Y X 5 ? Y 108 ? 19 1
1 A U 6 1_555 B A 51 1_555 -0.559 -0.056 0.220 -5.193 -15.392 2.961 6 X_U6:A107_Y X 6 ? Y 107 ? 20 1
1 A U 7 1_555 B A 50 1_555 0.142 -0.088 -0.267 9.548 -13.397 1.683 7 X_U7:A106_Y X 7 ? Y 106 ? 20 1
1 A C 8 1_555 B G 49 1_555 0.341 -0.026 0.121 3.675 -15.046 4.002 8 X_C8:G105_Y X 8 ? Y 105 ? 19 1
1 A G 9 1_555 B A 48 1_555 6.497 -4.103 0.633 -29.321 -47.540 -10.241 9 X_G9:A104_Y X 9 ? Y 104 ? 11 10
1 A G 10 1_555 A G 47 1_555 -3.050 -2.705 -0.024 26.510 -7.141 84.245 10 X_G10:G47_X X 10 ? X 47 ? 6 3
1 A G 33 1_555 A C 46 1_555 -0.545 -0.001 0.511 8.620 -19.565 4.579 11 X_G33:C46_X X 33 ? X 46 ? 19 1
1 A U 34 1_555 A A 45 1_555 -0.047 -0.024 -0.128 11.532 -21.879 4.723 12 X_U34:A45_X X 34 ? X 45 ? 20 1
1 A G 35 1_555 A C 44 1_555 -0.714 -0.252 -0.022 -10.961 -18.637 0.892 13 X_G35:C44_X X 35 ? X 44 ? 19 1
1 A G 36 1_555 A C 43 1_555 -0.414 -0.281 -0.027 -14.175 -14.308 0.118 14 X_G36:C43_X X 36 ? X 43 ? 19 1
1 A U 37 1_555 A A 40 1_555 4.449 -2.528 0.116 5.752 3.431 -95.746 15 X_U37:A40_X X 37 ? X 40 ? 24 4
1 A A 22 1_555 A U 18 1_555 -4.475 -2.503 1.045 0.574 15.765 -88.541 16 X_A22:U18_X X 22 ? X 18 ? 24 4
1 A C 25 1_555 A G 17 1_555 0.133 -0.094 -0.162 20.942 -10.037 -2.359 17 X_C25:G17_X X 25 ? X 17 ? 19 1
1 A C 26 1_555 A G 16 1_555 0.534 -0.050 -0.151 2.031 -14.318 1.097 18 X_C26:G16_X X 26 ? X 16 ? 19 1
1 A C 27 1_555 A G 15 1_555 0.054 0.130 0.255 -7.532 -5.000 4.233 19 X_C27:G15_X X 27 ? X 15 ? 19 1
1 A G 28 1_555 A C 13 1_555 -4.259 0.700 0.779 12.058 -9.896 51.625 20 X_G28:C13_X X 28 ? X 13 ? ? 5
1 A A 29 1_555 B U 38 1_555 0.385 -0.048 -0.289 -10.553 -14.698 -6.338 21 X_A29:U94_Y X 29 ? Y 94 ? 20 1
1 A C 30 1_555 B G 37 1_555 0.475 -0.151 0.193 -5.175 -20.315 3.054 22 X_C30:G93_Y X 30 ? Y 93 ? 19 1
1 A C 31 1_555 B G 28 1_555 0.053 0.040 0.072 -13.685 -8.058 -0.260 23 X_C31:G84_Y X 31 ? Y 84 ? 19 1
1 A G 32 1_555 B C 27 1_555 -0.610 -0.333 0.172 4.900 -10.353 -2.910 24 X_G32:C83_Y X 32 ? Y 83 ? 19 1
1 A G 41 1_555 B C 26 1_555 -0.253 -0.106 0.273 3.128 -19.821 3.776 25 X_G41:C82_Y X 41 ? Y 82 ? 19 1
1 A U 42 1_555 B A 25 1_555 -0.182 -0.101 -0.319 3.683 -5.126 -6.467 26 X_U42:A81_Y X 42 ? Y 81 ? 20 1
1 B U 8 1_555 B A 24 1_555 -0.455 0.039 0.366 0.065 -2.002 15.500 27 Y_U64:A80_Y Y 64 ? Y 80 ? ? 1
1 B U 9 1_555 B A 23 1_555 -0.325 -0.066 -0.117 4.230 -18.064 2.971 28 Y_U65:A79_Y Y 65 ? Y 79 ? 20 1
1 B U 10 1_555 B A 22 1_555 0.017 -0.015 -0.019 11.015 -10.209 5.248 29 Y_U66:A78_Y Y 66 ? Y 78 ? 20 1
1 B G 11 1_555 B C 21 1_555 0.045 -0.094 0.134 -5.559 -14.325 2.008 30 Y_G67:C77_Y Y 67 ? Y 77 ? 19 1
1 B G 12 1_555 B C 20 1_555 0.048 0.122 0.292 -13.997 -10.316 1.548 31 Y_G68:C76_Y Y 68 ? Y 76 ? 19 1
1 B U 13 1_555 B A 17 1_555 4.604 -2.112 1.052 2.279 10.234 -91.876 32 Y_U69:A73_Y Y 69 ? Y 73 ? 24 4
1 B G 14 1_555 A A 38 1_555 6.657 -4.325 1.005 12.487 15.564 -5.585 33 Y_G70:A38_X Y 70 ? X 38 ? 11 10
1 A A 49 1_555 B U 4 1_555 -1.027 -0.049 0.025 13.138 -14.509 0.028 34 X_A49:U60_Y X 49 ? Y 60 ? 20 1
1 A A 50 1_555 B U 3 1_555 0.105 -0.083 0.000 3.889 -18.852 1.441 35 X_A50:U59_Y X 50 ? Y 59 ? 20 1
1 A G 51 1_555 B C 2 1_555 0.471 -0.181 0.136 -6.176 -16.108 -1.446 36 X_G51:C58_Y X 51 ? Y 58 ? 19 1
1 A C 52 1_555 B G 1 1_555 0.375 -0.079 0.352 -9.968 -11.572 0.829 37 X_C52:G57_Y X 52 ? Y 57 ? 19 1
1 B A 29 1_555 B G 42 1_555 0.114 1.359 -0.473 6.981 -13.549 -12.432 38 Y_A85:G98_Y Y 85 ? Y 98 ? 8 1
1 B C 30 1_555 B G 41 1_555 0.344 -0.049 -0.024 14.561 -22.722 5.460 39 Y_C86:G97_Y Y 86 ? Y 97 ? 19 1
1 B A 31 1_555 B U 40 1_555 0.249 -0.108 0.390 -4.600 -24.650 6.723 40 Y_A87:U96_Y Y 87 ? Y 96 ? 20 1
1 B G 32 1_555 B C 39 1_555 -0.384 -0.179 0.180 -16.687 -21.761 -5.210 41 Y_G88:C95_Y Y 88 ? Y 95 ? 19 1
1 B U 33 1_555 B A 36 1_555 4.445 -2.581 -0.297 11.340 2.279 -92.694 42 Y_U89:A92_Y Y 89 ? Y 92 ? 24 4
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
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3.931 25.679 1 XX_G1G2:U111C112_YY X 1 ? Y 112 ? X 2 ? Y 111 ?
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1.355 35.482 2 XX_G2A3:U110U111_YY X 2 ? Y 111 ? X 3 ? Y 110 ?
1 A A 3 1_555 B U 54 1_555 A U 4 1_555 B A 53 1_555 0.022 -1.643 3.186 -1.365 5.447 34.087 -3.556 -0.235 2.894 9.214
2.309 34.533 3 XX_A3U4:A109U110_YY X 3 ? Y 110 ? X 4 ? Y 109 ?
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-2.164 31.556 4 XX_U4C5:G108A109_YY X 4 ? Y 109 ? X 5 ? Y 108 ?
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1.299 23.753 5 XX_C5U6:A107G108_YY X 5 ? Y 108 ? X 6 ? Y 107 ?
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-2.614 34.069 6 XX_U6U7:A106A107_YY X 6 ? Y 107 ? X 7 ? Y 106 ?
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0.546 34.554 7 XX_U7C8:G105A106_YY X 7 ? Y 106 ? X 8 ? Y 105 ?
1 A C 8 1_555 B G 49 1_555 A G 9 1_555 B A 48 1_555 -2.860 -0.838 4.366 6.415 26.224 49.222 -2.787 3.522 3.212 29.102
-7.119 55.732 8 XX_C8G9:A104G105_YY X 8 ? Y 105 ? X 9 ? Y 104 ?
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1 A C 30 1_555 B G 37 1_555 A C 31 1_555 B G 28 1_555 -0.941 -1.753 3.344 2.184 8.874 27.357 -5.366 2.344 2.578 18.133
-4.463 28.816 20 XX_C30C31:G84G93_YY X 30 ? Y 93 ? X 31 ? Y 84 ?
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1 A G 32 1_555 B C 27 1_555 A G 41 1_555 B C 26 1_555 0.812 -1.465 3.316 -1.216 3.883 35.048 -2.985 -1.518 3.112 6.421
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15.991 24.105 24 XY_U42U64:A80A81_YY X 42 ? Y 81 ? Y 64 ? Y 80 ?
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-5.344 31.571 25 YY_U64U65:A79A80_YY Y 64 ? Y 80 ? Y 65 ? Y 79 ?
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5.565 31.879 26 YY_U65U66:A78A79_YY Y 65 ? Y 79 ? Y 66 ? Y 78 ?
1 B U 10 1_555 B A 22 1_555 B G 11 1_555 B C 21 1_555 0.243 -1.542 3.298 1.479 17.312 35.132 -4.201 -0.202 2.324 26.755
-2.285 39.072 27 YY_U66G67:C77A78_YY Y 66 ? Y 78 ? Y 67 ? Y 77 ?
1 B G 11 1_555 B C 21 1_555 B G 12 1_555 B C 20 1_555 0.513 -1.823 3.277 2.062 7.029 36.729 -3.724 -0.541 2.915 11.020
-3.233 37.427 28 YY_G67G68:C76C77_YY Y 67 ? Y 77 ? Y 68 ? Y 76 ?
1 B G 12 1_555 B C 20 1_555 B U 13 1_555 B A 17 1_555 -3.063 -1.810 3.151 -1.842 2.661 72.708 -1.610 2.523 3.158 2.244
1.553 72.770 29 YY_G68U69:A73C76_YY Y 68 ? Y 76 ? Y 69 ? Y 73 ?
1 B U 13 1_555 B A 17 1_555 B G 14 1_555 A A 38 1_555 0.903 -0.609 2.989 6.842 1.536 -2.412 0.776 24.496 0.266 -15.557
69.320 -7.415 30 YY_U69G70:A38A73_XY Y 69 ? Y 73 ? Y 70 ? X 38 ?
1 A A 49 1_555 B U 4 1_555 A A 50 1_555 B U 3 1_555 -0.444 -1.302 3.398 -3.378 6.501 37.309 -2.838 0.247 3.162 10.044
5.219 37.997 31 XX_A49A50:U59U60_YY X 49 ? Y 60 ? X 50 ? Y 59 ?
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-3.716 32.570 33 XX_G51C52:G57C58_YY X 51 ? Y 58 ? X 52 ? Y 57 ?
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-6.936 36.060 36 YY_A87G88:C95U96_YY Y 87 ? Y 96 ? Y 88 ? Y 95 ?
1 B G 32 1_555 B C 39 1_555 B U 33 1_555 B A 36 1_555 -1.021 -0.977 2.725 6.210 -1.592 82.374 -0.708 0.900 2.672 -1.207
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#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 'POTASSIUM ION' K
4 'MAGNESIUM ION' MG
5 '(6M)-2-[(3S)-1-{[2-(methylamino)pyrimidin-5-yl]methyl}piperidin-3-yl]-6-(thiophen-2-yl)pyrimidin-4-ol' 51B
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3F4E
_pdbx_initial_refinement_model.details ?
#