data_5C45 # _entry.id 5C45 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5C45 pdb_00005c45 10.2210/pdb5c45/pdb WWPDB D_1000210937 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details '2YIF contains the same heptamer in apo form' _pdbx_database_related.db_id 2YIF _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5C45 _pdbx_database_status.recvd_initial_deposition_date 2015-06-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Fischmann, T.O.' _audit_author.pdbx_ordinal 1 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 526 _citation.language ? _citation.page_first 672 _citation.page_last 677 _citation.title 'Selective small-molecule inhibition of an RNA structural element.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature15542 _citation.pdbx_database_id_PubMed 26416753 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Howe, J.A.' 1 ? primary 'Wang, H.' 2 ? primary 'Fischmann, T.O.' 3 ? primary 'Balibar, C.J.' 4 ? primary 'Xiao, L.' 5 ? primary 'Galgoci, A.M.' 6 ? primary 'Malinverni, J.C.' 7 ? primary 'Mayhood, T.' 8 ? primary 'Villafania, A.' 9 ? primary 'Nahvi, A.' 10 ? primary 'Murgolo, N.' 11 ? primary 'Barbieri, C.M.' 12 ? primary 'Mann, P.A.' 13 ? primary 'Carr, D.' 14 ? primary 'Xia, E.' 15 ? primary 'Zuck, P.' 16 ? primary 'Riley, D.' 17 ? primary 'Painter, R.E.' 18 ? primary 'Walker, S.S.' 19 ? primary 'Sherborne, B.' 20 ? primary 'de Jesus, R.' 21 ? primary 'Pan, W.' 22 ? primary 'Plotkin, M.A.' 23 ? primary 'Wu, J.' 24 ? primary 'Rindgen, D.' 25 ? primary 'Cummings, J.' 26 ? primary 'Garlisi, C.G.' 27 ? primary 'Zhang, R.' 28 ? primary 'Sheth, P.R.' 29 ? primary 'Gill, C.J.' 30 ? primary 'Tang, H.' 31 ? primary 'Roemer, T.' 32 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5C45 _cell.details ? _cell.formula_units_Z ? _cell.length_a 71.110 _cell.length_a_esd ? _cell.length_b 71.110 _cell.length_b_esd ? _cell.length_c 138.510 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'FMN Riboswitch' 17455.389 1 ? ? ? ? 2 polymer syn 'FMN Riboswitch' 18092.771 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 6 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 non-polymer syn '(6M)-2-[(3S)-1-{[2-(methylamino)pyrimidin-5-yl]methyl}piperidin-3-yl]-6-(thiophen-2-yl)pyrimidin-4-ol' 382.483 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU X ? 2 polyribonucleotide no no GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC Y ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 A n 1 51 G n 1 52 C n 1 53 U n 1 54 U n 2 1 G n 2 2 C n 2 3 U n 2 4 U n 2 5 U n 2 6 G n 2 7 A n 2 8 U n 2 9 U n 2 10 U n 2 11 G n 2 12 G n 2 13 U n 2 14 G n 2 15 A n 2 16 A n 2 17 A n 2 18 U n 2 19 U n 2 20 C n 2 21 C n 2 22 A n 2 23 A n 2 24 A n 2 25 A n 2 26 C n 2 27 C n 2 28 G n 2 29 A n 2 30 C n 2 31 A n 2 32 G n 2 33 U n 2 34 A n 2 35 G n 2 36 A n 2 37 G n 2 38 U n 2 39 C n 2 40 U n 2 41 G n 2 42 G n 2 43 A n 2 44 U n 2 45 G n 2 46 A n 2 47 G n 2 48 A n 2 49 G n 2 50 A n 2 51 A n 2 52 G n 2 53 A n 2 54 U n 2 55 U n 2 56 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 54 'Fusobacterium nucleatum' ? 851 ? 2 1 sample 1 56 'Fusobacterium nucleatum' ? 851 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 GB AE009951.2 20095250 ? 1 AUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAG 2495 2 GB AE009951.2 20095250 ? 2 GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGA 2549 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5C45 X 3 ? 51 ? 20095250 2495 ? 2543 ? 3 51 2 2 5C45 Y 1 ? 53 ? 20095250 2549 ? 2601 ? 57 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5C45 G X 1 ? GB 20095250 ? ? insertion 1 1 1 5C45 G X 2 ? GB 20095250 ? ? insertion 2 2 1 5C45 C X 52 ? GB 20095250 ? ? insertion 52 3 1 5C45 U X 53 ? GB 20095250 ? ? insertion 53 4 1 5C45 U X 54 ? GB 20095250 ? ? insertion 54 5 2 5C45 U Y 54 ? GB 20095250 ? ? insertion 110 6 2 5C45 U Y 55 ? GB 20095250 ? ? insertion 111 7 2 5C45 C Y 56 ? GB 20095250 ? ? insertion 112 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 51B non-polymer . '(6M)-2-[(3S)-1-{[2-(methylamino)pyrimidin-5-yl]methyl}piperidin-3-yl]-6-(thiophen-2-yl)pyrimidin-4-ol' ? 'C19 H22 N6 O S' 382.483 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5C45 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Na Acetate, pH 5.0, 0.2 M MgCl2, and 7 to 11% v/v PEG 4K' _exptl_crystal_grow.pdbx_pH_range 4.5-6.8 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-07-25 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1. _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1. _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 109.83 _reflns.entry_id 5C45 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.928 _reflns.d_resolution_low 35.6 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9222 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.0 _reflns.pdbx_Rmerge_I_obs 0.019 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 36.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.928 _reflns_shell.d_res_low 2.938 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.16 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 6.9460 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 6.9460 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -13.8920 _refine.B_iso_max ? _refine.B_iso_mean 103.14 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.9377 _refine.correlation_coeff_Fo_to_Fc_free 0.9218 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5C45 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.93 _refine.ls_d_res_low 35.56 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9179 _refine.ls_number_reflns_R_free 442 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.97 _refine.ls_percent_reflns_R_free 4.82 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2138 _refine.ls_R_factor_R_free 0.2343 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2128 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3F4E _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI 0.362 _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5C45 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.485 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2340 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2375 _refine_hist.d_res_high 2.93 _refine_hist.d_res_low 35.56 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 2649 ? t_bond_d 2.00 HARMONIC 'X-RAY DIFFRACTION' ? 0.74 ? 4123 ? t_angle_deg 2.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 551 ? t_dihedral_angle_d 2.00 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_incorr_chiral_ct ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ? 'X-RAY DIFFRACTION' ? ? ? 112 ? t_gen_planes 5.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 2649 ? t_it 20.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 0 ? t_nbd 5.00 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 23.60 ? ? ? t_other_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 436 ? t_chiral_improper_torsion 5.00 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 2634 ? t_ideal_dist_contact 4.00 SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.93 _refine_ls_shell.d_res_low 3.28 _refine_ls_shell.number_reflns_all 2528 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 126 _refine_ls_shell.number_reflns_R_work 2402 _refine_ls_shell.percent_reflns_obs 99.97 _refine_ls_shell.percent_reflns_R_free 4.98 _refine_ls_shell.R_factor_all 0.2522 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2705 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2513 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5C45 _struct.title 'Selective Small Molecule Inhibition of the FMN Riboswitch' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5C45 _struct_keywords.text 'RNA, TRANSLATION, RNA-INHIBITOR complex' _struct_keywords.pdbx_keywords RNA/INHIBITOR # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 3 ? G N N 5 ? H N N 3 ? I N N 4 ? J N N 3 ? K N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 14 OP2 ? ? ? 1_555 D MG . MG ? ? X A 14 X MG 102 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc2 metalc ? ? A G 16 OP2 ? ? ? 1_555 E K . K ? ? X G 16 X K 103 1_555 ? ? ? ? ? ? ? 3.388 ? ? metalc3 metalc ? ? A A 40 "O2'" ? ? ? 1_555 C K . K ? ? X A 40 X K 101 1_555 ? ? ? ? ? ? ? 3.308 ? ? metalc4 metalc ? ? B U 33 O4 ? ? ? 1_555 I MG . MG ? ? Y U 89 Y MG 302 1_555 ? ? ? ? ? ? ? 2.045 ? ? metalc5 metalc ? ? B A 34 OP2 ? ? ? 1_555 K K . K ? ? Y A 90 Y K 304 1_555 ? ? ? ? ? ? ? 3.151 ? ? metalc6 metalc ? ? B G 35 OP1 ? ? ? 1_555 K K . K ? ? Y G 91 Y K 304 1_555 ? ? ? ? ? ? ? 2.824 ? ? metalc7 metalc ? ? B A 36 OP2 ? ? ? 1_555 I MG . MG ? ? Y A 92 Y MG 302 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc8 metalc ? ? B G 41 O6 ? ? ? 1_555 H K . K ? ? Y G 97 Y K 301 1_555 ? ? ? ? ? ? ? 3.306 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 56 N3 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 55 O2 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 B U 55 N3 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 54 N3 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 54 O4 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 53 N1 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 53 N6 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 52 N1 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 52 O6 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 52 N2 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 51 N1 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 51 N6 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 50 N1 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 50 N6 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 49 N1 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 49 O6 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 49 N2 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 B A 48 N7 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog19 hydrog ? ? A G 9 N3 ? ? ? 1_555 B A 48 N6 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog20 hydrog ? ? A G 10 N7 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N1 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 11 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog23 hydrog ? ? A G 12 N2 ? ? ? 1_555 B G 37 N3 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog24 hydrog ? ? A G 12 N3 ? ? ? 1_555 B G 37 N2 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog25 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog26 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog27 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog38 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog39 hydrog ? ? A A 29 N1 ? ? ? 1_555 B U 38 N3 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 29 N6 ? ? ? 1_555 B U 38 O4 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 30 N3 ? ? ? 1_555 B G 37 N1 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 30 N4 ? ? ? 1_555 B G 37 O6 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 30 O2 ? ? ? 1_555 B G 37 N2 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 31 N3 ? ? ? 1_555 B G 28 N1 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 31 N4 ? ? ? 1_555 B G 28 O6 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 31 O2 ? ? ? 1_555 B G 28 N2 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 32 N1 ? ? ? 1_555 B C 27 N3 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 32 N2 ? ? ? 1_555 B C 27 O2 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 32 O6 ? ? ? 1_555 B C 27 N4 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 33 N2 ? ? ? 1_555 B A 48 N3 ? ? X G 33 Y A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog54 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog63 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog64 hydrog ? ? A A 38 N6 ? ? ? 1_555 B G 14 N3 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog65 hydrog ? ? A A 38 N7 ? ? ? 1_555 B G 14 N2 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog66 hydrog ? ? A G 41 N2 ? ? ? 1_555 B A 7 N3 ? ? X G 41 Y A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog67 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 26 N3 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 26 O2 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 26 N4 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A U 42 N3 ? ? ? 1_555 B A 25 N1 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A U 42 O4 ? ? ? 1_555 B A 25 N6 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 49 N1 ? ? ? 1_555 B U 4 N3 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 49 N6 ? ? ? 1_555 B U 4 O4 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 50 N1 ? ? ? 1_555 B U 3 N3 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 50 N6 ? ? ? 1_555 B U 3 O4 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 51 N1 ? ? ? 1_555 B C 2 N3 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 51 N2 ? ? ? 1_555 B C 2 O2 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 51 O6 ? ? ? 1_555 B C 2 N4 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 52 N3 ? ? ? 1_555 B G 1 N1 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A C 52 N4 ? ? ? 1_555 B G 1 O6 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 52 O2 ? ? ? 1_555 B G 1 N2 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 24 N1 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog83 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 23 N1 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 23 N6 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 22 N1 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 22 N6 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 21 N3 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 21 O2 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 21 N4 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 20 N3 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 20 O2 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 20 N4 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 17 N7 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog94 hydrog ? ? B U 13 O2 ? ? ? 1_555 B A 17 N6 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog95 hydrog ? ? B A 29 N1 ? ? ? 1_555 B G 42 N1 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog96 hydrog ? ? B A 29 N6 ? ? ? 1_555 B G 42 O6 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog97 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 41 N1 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 41 O6 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 41 N2 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B A 31 N1 ? ? ? 1_555 B U 40 N3 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B A 31 N6 ? ? ? 1_555 B U 40 O4 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 39 N3 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 39 O2 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 39 N4 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B U 33 N3 ? ? ? 1_555 B A 36 N7 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog106 hydrog ? ? B U 33 O2 ? ? ? 1_555 B A 36 N6 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X K 101 ? 1 'binding site for residue K X 101' AC2 Software X MG 102 ? 1 'binding site for residue MG X 102' AC3 Software X K 103 ? 1 'binding site for residue K X 103' AC4 Software X 51B 105 ? 8 'binding site for residue 51B X 105' AC5 Software Y K 301 ? 1 'binding site for residue K Y 301' AC6 Software Y MG 302 ? 3 'binding site for residue MG Y 302' AC7 Software Y K 303 ? 2 'binding site for residue K Y 303' AC8 Software Y K 304 ? 2 'binding site for residue K Y 304' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 A A 40 ? A X 40 . ? 1_555 ? 2 AC2 1 A A 14 ? A X 14 . ? 1_555 ? 3 AC3 1 G A 16 ? G X 16 . ? 1_555 ? 4 AC4 8 G A 10 ? G X 10 . ? 1_555 ? 5 AC4 8 G A 11 ? G X 11 . ? 1_555 ? 6 AC4 8 A A 48 ? A X 48 . ? 1_555 ? 7 AC4 8 A A 49 ? A X 49 . ? 1_555 ? 8 AC4 8 G B 6 ? G Y 62 . ? 1_555 ? 9 AC4 8 G B 28 ? G Y 84 . ? 1_555 ? 10 AC4 8 A B 29 ? A Y 85 . ? 1_555 ? 11 AC4 8 A B 43 ? A Y 99 . ? 1_555 ? 12 AC5 1 G B 41 ? G Y 97 . ? 1_555 ? 13 AC6 3 G B 32 ? G Y 88 . ? 1_555 ? 14 AC6 3 U B 33 ? U Y 89 . ? 1_555 ? 15 AC6 3 A B 36 ? A Y 92 . ? 1_555 ? 16 AC7 2 G B 11 ? G Y 67 . ? 1_555 ? 17 AC7 2 G B 12 ? G Y 68 . ? 1_555 ? 18 AC8 2 A B 34 ? A Y 90 . ? 1_555 ? 19 AC8 2 G B 35 ? G Y 91 . ? 1_555 ? # _atom_sites.entry_id 5C45 _atom_sites.fract_transf_matrix[1][1] 0.014063 _atom_sites.fract_transf_matrix[1][2] 0.008119 _atom_sites.fract_transf_matrix[1][3] -0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016238 _atom_sites.fract_transf_matrix[2][3] -0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007220 _atom_sites.fract_transf_vector[1] -0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] -0.00000 # loop_ _atom_type.symbol C K MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 U 4 4 4 U U X . n A 1 5 C 5 5 5 C C X . n A 1 6 U 6 6 6 U U X . n A 1 7 U 7 7 7 U U X . n A 1 8 C 8 8 8 C C X . n A 1 9 G 9 9 9 G G X . n A 1 10 G 10 10 10 G G X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 C 13 13 13 C C X . n A 1 14 A 14 14 14 A A X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 A 20 20 20 A A X . n A 1 21 A 21 21 21 A A X . n A 1 22 A 22 22 22 A A X . n A 1 23 U 23 23 23 U U X . n A 1 24 U 24 24 24 U U X . n A 1 25 C 25 25 25 C C X . n A 1 26 C 26 26 26 C C X . n A 1 27 C 27 27 27 C C X . n A 1 28 G 28 28 28 G G X . n A 1 29 A 29 29 29 A A X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 G 33 33 33 G G X . n A 1 34 U 34 34 34 U U X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 U 37 37 37 U U X . n A 1 38 A 38 38 38 A A X . n A 1 39 U 39 39 39 U U X . n A 1 40 A 40 40 40 A A X . n A 1 41 G 41 41 41 G G X . n A 1 42 U 42 42 42 U U X . n A 1 43 C 43 43 43 C C X . n A 1 44 C 44 44 44 C C X . n A 1 45 A 45 45 45 A A X . n A 1 46 C 46 46 46 C C X . n A 1 47 G 47 47 47 G G X . n A 1 48 A 48 48 48 A A X . n A 1 49 A 49 49 49 A A X . n A 1 50 A 50 50 50 A A X . n A 1 51 G 51 51 51 G G X . n A 1 52 C 52 52 52 C C X . n A 1 53 U 53 53 53 U U X . n A 1 54 U 54 54 54 U U X . n B 2 1 G 1 57 57 G G Y . n B 2 2 C 2 58 58 C C Y . n B 2 3 U 3 59 59 U U Y . n B 2 4 U 4 60 60 U U Y . n B 2 5 U 5 61 61 U U Y . n B 2 6 G 6 62 62 G G Y . n B 2 7 A 7 63 63 A A Y . n B 2 8 U 8 64 64 U U Y . n B 2 9 U 9 65 65 U U Y . n B 2 10 U 10 66 66 U U Y . n B 2 11 G 11 67 67 G G Y . n B 2 12 G 12 68 68 G G Y . n B 2 13 U 13 69 69 U U Y . n B 2 14 G 14 70 70 G G Y . n B 2 15 A 15 71 71 A A Y . n B 2 16 A 16 72 72 A A Y . n B 2 17 A 17 73 73 A A Y . n B 2 18 U 18 74 74 U U Y . n B 2 19 U 19 75 75 U U Y . n B 2 20 C 20 76 76 C C Y . n B 2 21 C 21 77 77 C C Y . n B 2 22 A 22 78 78 A A Y . n B 2 23 A 23 79 79 A A Y . n B 2 24 A 24 80 80 A A Y . n B 2 25 A 25 81 81 A A Y . n B 2 26 C 26 82 82 C C Y . n B 2 27 C 27 83 83 C C Y . n B 2 28 G 28 84 84 G G Y . n B 2 29 A 29 85 85 A A Y . n B 2 30 C 30 86 86 C C Y . n B 2 31 A 31 87 87 A A Y . n B 2 32 G 32 88 88 G G Y . n B 2 33 U 33 89 89 U U Y . n B 2 34 A 34 90 90 A A Y . n B 2 35 G 35 91 91 G G Y . n B 2 36 A 36 92 92 A A Y . n B 2 37 G 37 93 93 G G Y . n B 2 38 U 38 94 94 U U Y . n B 2 39 C 39 95 95 C C Y . n B 2 40 U 40 96 96 U U Y . n B 2 41 G 41 97 97 G G Y . n B 2 42 G 42 98 98 G G Y . n B 2 43 A 43 99 99 A A Y . n B 2 44 U 44 100 100 U U Y . n B 2 45 G 45 101 101 G G Y . n B 2 46 A 46 102 102 A A Y . n B 2 47 G 47 103 103 G G Y . n B 2 48 A 48 104 104 A A Y . n B 2 49 G 49 105 105 G G Y . n B 2 50 A 50 106 106 A A Y . n B 2 51 A 51 107 107 A A Y . n B 2 52 G 52 108 108 G G Y . n B 2 53 A 53 109 109 A A Y . n B 2 54 U 54 110 110 U U Y . n B 2 55 U 55 111 111 U U Y . n B 2 56 C 56 112 112 C C Y . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K 1 101 300 K K X . D 4 MG 1 102 306 MG MG X . E 3 K 1 103 307 K K X . F 3 K 1 104 311 K K X . G 5 51B 1 105 1 51B SCH X . H 3 K 1 301 301 K K Y . I 4 MG 1 302 305 MG MG Y . J 3 K 1 303 309 K K Y . K 3 K 1 304 999 K K Y . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7290 ? 1 MORE -39 ? 1 'SSA (A^2)' 16100 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? B U 33 ? Y U 89 ? 1_555 MG ? I MG . ? Y MG 302 ? 1_555 OP2 ? B A 36 ? Y A 92 ? 1_555 91.9 ? 2 OP2 ? B A 34 ? Y A 90 ? 1_555 K ? K K . ? Y K 304 ? 1_555 OP1 ? B G 35 ? Y G 91 ? 1_555 68.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-10-07 2 'Structure model' 1 1 2015-10-14 3 'Structure model' 1 2 2015-11-11 4 'Structure model' 1 3 2023-03-01 5 'Structure model' 1 4 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' citation 3 4 'Structure model' database_2 4 4 'Structure model' entity 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' pdbx_struct_oper_list 7 4 'Structure model' struct_ref_seq_dif 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_citation.journal_id_CSD' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_entity.pdbx_description' 6 4 'Structure model' '_pdbx_entity_nonpoly.name' 7 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 8 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.11.5 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? . 4 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id X _pdbx_validate_planes.auth_seq_id 11 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.052 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X U 54 ? "C5'" ? A U 54 "C5'" 2 1 Y 1 X U 54 ? "C4'" ? A U 54 "C4'" 3 1 Y 1 X U 54 ? "O4'" ? A U 54 "O4'" 4 1 Y 1 X U 54 ? "C3'" ? A U 54 "C3'" 5 1 Y 1 X U 54 ? "O3'" ? A U 54 "O3'" 6 1 Y 1 X U 54 ? "C2'" ? A U 54 "C2'" 7 1 Y 1 X U 54 ? "O2'" ? A U 54 "O2'" 8 1 Y 1 X U 54 ? "C1'" ? A U 54 "C1'" 9 1 Y 1 X U 54 ? N1 ? A U 54 N1 10 1 Y 1 X U 54 ? C2 ? A U 54 C2 11 1 Y 1 X U 54 ? O2 ? A U 54 O2 12 1 Y 1 X U 54 ? N3 ? A U 54 N3 13 1 Y 1 X U 54 ? C4 ? A U 54 C4 14 1 Y 1 X U 54 ? O4 ? A U 54 O4 15 1 Y 1 X U 54 ? C5 ? A U 54 C5 16 1 Y 1 X U 54 ? C6 ? A U 54 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 51B N01 N Y N 1 51B C02 C Y N 2 51B N03 N Y N 3 51B C04 C Y N 4 51B C05 C Y N 5 51B C06 C Y N 6 51B O07 O N N 7 51B C08 C N S 8 51B C09 C N N 9 51B N10 N N N 10 51B C11 C N N 11 51B C12 C N N 12 51B C13 C N N 13 51B C14 C Y N 14 51B S15 S Y N 15 51B C16 C Y N 16 51B C17 C Y N 17 51B C18 C Y N 18 51B C19 C N N 19 51B C20 C Y N 20 51B C21 C Y N 21 51B N22 N Y N 22 51B C23 C Y N 23 51B N24 N Y N 24 51B C25 C Y N 25 51B N26 N N N 26 51B C27 C N N 27 51B H1 H N N 28 51B H3 H N N 29 51B H4 H N N 30 51B H5 H N N 31 51B H7 H N N 32 51B H8 H N N 33 51B H9 H N N 34 51B H10 H N N 35 51B H11 H N N 36 51B H12 H N N 37 51B H13 H N N 38 51B H14 H N N 39 51B H15 H N N 40 51B H16 H N N 41 51B H17 H N N 42 51B H18 H N N 43 51B H19 H N N 44 51B H20 H N N 45 51B H21 H N N 46 51B H22 H N N 47 51B H23 H N N 48 51B H2 H N N 49 A OP3 O N N 50 A P P N N 51 A OP1 O N N 52 A OP2 O N N 53 A "O5'" O N N 54 A "C5'" C N N 55 A "C4'" C N R 56 A "O4'" O N N 57 A "C3'" C N S 58 A "O3'" O N N 59 A "C2'" C N R 60 A "O2'" O N N 61 A "C1'" C N R 62 A N9 N Y N 63 A C8 C Y N 64 A N7 N Y N 65 A C5 C Y N 66 A C6 C Y N 67 A N6 N N N 68 A N1 N Y N 69 A C2 C Y N 70 A N3 N Y N 71 A C4 C Y N 72 A HOP3 H N N 73 A HOP2 H N N 74 A "H5'" H N N 75 A "H5''" H N N 76 A "H4'" H N N 77 A "H3'" H N N 78 A "HO3'" H N N 79 A "H2'" H N N 80 A "HO2'" H N N 81 A "H1'" H N N 82 A H8 H N N 83 A H61 H N N 84 A H62 H N N 85 A H2 H N N 86 C OP3 O N N 87 C P P N N 88 C OP1 O N N 89 C OP2 O N N 90 C "O5'" O N N 91 C "C5'" C N N 92 C "C4'" C N R 93 C "O4'" O N N 94 C "C3'" C N S 95 C "O3'" O N N 96 C "C2'" C N R 97 C "O2'" O N N 98 C "C1'" C N R 99 C N1 N N N 100 C C2 C N N 101 C O2 O N N 102 C N3 N N N 103 C C4 C N N 104 C N4 N N N 105 C C5 C N N 106 C C6 C N N 107 C HOP3 H N N 108 C HOP2 H N N 109 C "H5'" H N N 110 C "H5''" H N N 111 C "H4'" H N N 112 C "H3'" H N N 113 C "HO3'" H N N 114 C "H2'" H N N 115 C "HO2'" H N N 116 C "H1'" H N N 117 C H41 H N N 118 C H42 H N N 119 C H5 H N N 120 C H6 H N N 121 G OP3 O N N 122 G P P N N 123 G OP1 O N N 124 G OP2 O N N 125 G "O5'" O N N 126 G "C5'" C N N 127 G "C4'" C N R 128 G "O4'" O N N 129 G "C3'" C N S 130 G "O3'" O N N 131 G "C2'" C N R 132 G "O2'" O N N 133 G "C1'" C N R 134 G N9 N Y N 135 G C8 C Y N 136 G N7 N Y N 137 G C5 C Y N 138 G C6 C N N 139 G O6 O N N 140 G N1 N N N 141 G C2 C N N 142 G N2 N N N 143 G N3 N N N 144 G C4 C Y N 145 G HOP3 H N N 146 G HOP2 H N N 147 G "H5'" H N N 148 G "H5''" H N N 149 G "H4'" H N N 150 G "H3'" H N N 151 G "HO3'" H N N 152 G "H2'" H N N 153 G "HO2'" H N N 154 G "H1'" H N N 155 G H8 H N N 156 G H1 H N N 157 G H21 H N N 158 G H22 H N N 159 K K K N N 160 MG MG MG N N 161 U OP3 O N N 162 U P P N N 163 U OP1 O N N 164 U OP2 O N N 165 U "O5'" O N N 166 U "C5'" C N N 167 U "C4'" C N R 168 U "O4'" O N N 169 U "C3'" C N S 170 U "O3'" O N N 171 U "C2'" C N R 172 U "O2'" O N N 173 U "C1'" C N R 174 U N1 N N N 175 U C2 C N N 176 U O2 O N N 177 U N3 N N N 178 U C4 C N N 179 U O4 O N N 180 U C5 C N N 181 U C6 C N N 182 U HOP3 H N N 183 U HOP2 H N N 184 U "H5'" H N N 185 U "H5''" H N N 186 U "H4'" H N N 187 U "H3'" H N N 188 U "HO3'" H N N 189 U "H2'" H N N 190 U "HO2'" H N N 191 U "H1'" H N N 192 U H3 H N N 193 U H5 H N N 194 U H6 H N N 195 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 51B C12 C11 sing N N 1 51B C12 C13 sing N N 2 51B C11 N10 sing N N 3 51B C13 C08 sing N N 4 51B N10 C19 sing N N 5 51B N10 C09 sing N N 6 51B C08 C09 sing N N 7 51B C08 C02 sing N N 8 51B C19 C20 sing N N 9 51B N01 C02 doub Y N 10 51B N01 C06 sing Y N 11 51B C02 N03 sing Y N 12 51B O07 C06 sing N N 13 51B C06 C05 doub Y N 14 51B C20 C25 doub Y N 15 51B C20 C21 sing Y N 16 51B C25 N24 sing Y N 17 51B N03 C04 doub Y N 18 51B C21 N22 doub Y N 19 51B C05 C04 sing Y N 20 51B C04 C14 sing N N 21 51B N24 C23 doub Y N 22 51B N22 C23 sing Y N 23 51B C23 N26 sing N N 24 51B C14 S15 sing Y N 25 51B C14 C18 doub Y N 26 51B S15 C16 sing Y N 27 51B N26 C27 sing N N 28 51B C18 C17 sing Y N 29 51B C16 C17 doub Y N 30 51B C05 H1 sing N N 31 51B C08 H3 sing N N 32 51B C09 H4 sing N N 33 51B C09 H5 sing N N 34 51B C11 H7 sing N N 35 51B C11 H8 sing N N 36 51B C12 H9 sing N N 37 51B C12 H10 sing N N 38 51B C13 H11 sing N N 39 51B C13 H12 sing N N 40 51B C16 H13 sing N N 41 51B C17 H14 sing N N 42 51B C18 H15 sing N N 43 51B C19 H16 sing N N 44 51B C19 H17 sing N N 45 51B C21 H18 sing N N 46 51B C25 H19 sing N N 47 51B N26 H20 sing N N 48 51B C27 H21 sing N N 49 51B C27 H22 sing N N 50 51B C27 H23 sing N N 51 51B O07 H2 sing N N 52 A OP3 P sing N N 53 A OP3 HOP3 sing N N 54 A P OP1 doub N N 55 A P OP2 sing N N 56 A P "O5'" sing N N 57 A OP2 HOP2 sing N N 58 A "O5'" "C5'" sing N N 59 A "C5'" "C4'" sing N N 60 A "C5'" "H5'" sing N N 61 A "C5'" "H5''" sing N N 62 A "C4'" "O4'" sing N N 63 A "C4'" "C3'" sing N N 64 A "C4'" "H4'" sing N N 65 A "O4'" "C1'" sing N N 66 A "C3'" "O3'" sing N N 67 A "C3'" "C2'" sing N N 68 A "C3'" "H3'" sing N N 69 A "O3'" "HO3'" sing N N 70 A "C2'" "O2'" sing N N 71 A "C2'" "C1'" sing N N 72 A "C2'" "H2'" sing N N 73 A "O2'" "HO2'" sing N N 74 A "C1'" N9 sing N N 75 A "C1'" "H1'" sing N N 76 A N9 C8 sing Y N 77 A N9 C4 sing Y N 78 A C8 N7 doub Y N 79 A C8 H8 sing N N 80 A N7 C5 sing Y N 81 A C5 C6 sing Y N 82 A C5 C4 doub Y N 83 A C6 N6 sing N N 84 A C6 N1 doub Y N 85 A N6 H61 sing N N 86 A N6 H62 sing N N 87 A N1 C2 sing Y N 88 A C2 N3 doub Y N 89 A C2 H2 sing N N 90 A N3 C4 sing Y N 91 C OP3 P sing N N 92 C OP3 HOP3 sing N N 93 C P OP1 doub N N 94 C P OP2 sing N N 95 C P "O5'" sing N N 96 C OP2 HOP2 sing N N 97 C "O5'" "C5'" sing N N 98 C "C5'" "C4'" sing N N 99 C "C5'" "H5'" sing N N 100 C "C5'" "H5''" sing N N 101 C "C4'" "O4'" sing N N 102 C "C4'" "C3'" sing N N 103 C "C4'" "H4'" sing N N 104 C "O4'" "C1'" sing N N 105 C "C3'" "O3'" sing N N 106 C "C3'" "C2'" sing N N 107 C "C3'" "H3'" sing N N 108 C "O3'" "HO3'" sing N N 109 C "C2'" "O2'" sing N N 110 C "C2'" "C1'" sing N N 111 C "C2'" "H2'" sing N N 112 C "O2'" "HO2'" sing N N 113 C "C1'" N1 sing N N 114 C "C1'" "H1'" sing N N 115 C N1 C2 sing N N 116 C N1 C6 sing N N 117 C C2 O2 doub N N 118 C C2 N3 sing N N 119 C N3 C4 doub N N 120 C C4 N4 sing N N 121 C C4 C5 sing N N 122 C N4 H41 sing N N 123 C N4 H42 sing N N 124 C C5 C6 doub N N 125 C C5 H5 sing N N 126 C C6 H6 sing N N 127 G OP3 P sing N N 128 G OP3 HOP3 sing N N 129 G P OP1 doub N N 130 G P OP2 sing N N 131 G P "O5'" sing N N 132 G OP2 HOP2 sing N N 133 G "O5'" "C5'" sing N N 134 G "C5'" "C4'" sing N N 135 G "C5'" "H5'" sing N N 136 G "C5'" "H5''" sing N N 137 G "C4'" "O4'" sing N N 138 G "C4'" "C3'" sing N N 139 G "C4'" "H4'" sing N N 140 G "O4'" "C1'" sing N N 141 G "C3'" "O3'" sing N N 142 G "C3'" "C2'" sing N N 143 G "C3'" "H3'" sing N N 144 G "O3'" "HO3'" sing N N 145 G "C2'" "O2'" sing N N 146 G "C2'" "C1'" sing N N 147 G "C2'" "H2'" sing N N 148 G "O2'" "HO2'" sing N N 149 G "C1'" N9 sing N N 150 G "C1'" "H1'" sing N N 151 G N9 C8 sing Y N 152 G N9 C4 sing Y N 153 G C8 N7 doub Y N 154 G C8 H8 sing N N 155 G N7 C5 sing Y N 156 G C5 C6 sing N N 157 G C5 C4 doub Y N 158 G C6 O6 doub N N 159 G C6 N1 sing N N 160 G N1 C2 sing N N 161 G N1 H1 sing N N 162 G C2 N2 sing N N 163 G C2 N3 doub N N 164 G N2 H21 sing N N 165 G N2 H22 sing N N 166 G N3 C4 sing N N 167 U OP3 P sing N N 168 U OP3 HOP3 sing N N 169 U P OP1 doub N N 170 U P OP2 sing N N 171 U P "O5'" sing N N 172 U OP2 HOP2 sing N N 173 U "O5'" "C5'" sing N N 174 U "C5'" "C4'" sing N N 175 U "C5'" "H5'" sing N N 176 U "C5'" "H5''" sing N N 177 U "C4'" "O4'" sing N N 178 U "C4'" "C3'" sing N N 179 U "C4'" "H4'" sing N N 180 U "O4'" "C1'" sing N N 181 U "C3'" "O3'" sing N N 182 U "C3'" "C2'" sing N N 183 U "C3'" "H3'" sing N N 184 U "O3'" "HO3'" sing N N 185 U "C2'" "O2'" sing N N 186 U "C2'" "C1'" sing N N 187 U "C2'" "H2'" sing N N 188 U "O2'" "HO2'" sing N N 189 U "C1'" N1 sing N N 190 U "C1'" "H1'" sing N N 191 U N1 C2 sing N N 192 U N1 C6 sing N N 193 U C2 O2 doub N N 194 U C2 N3 sing N N 195 U N3 C4 sing N N 196 U N3 H3 sing N N 197 U C4 O4 doub N N 198 U C4 C5 sing N N 199 U C5 C6 doub N N 200 U C5 H5 sing N N 201 U C6 H6 sing N N 202 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5C45 'double helix' 5C45 'a-form double helix' 5C45 'hairpin loop' 5C45 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 56 1_555 1.197 0.061 0.500 -5.075 -20.575 -17.441 1 X_G1:C112_Y X 1 ? Y 112 ? ? 1 1 A G 2 1_555 B U 55 1_555 -0.995 -0.027 0.286 -0.720 -17.466 -1.523 2 X_G2:U111_Y X 2 ? Y 111 ? 28 1 1 A A 3 1_555 B U 54 1_555 -0.544 -0.128 0.145 -3.036 -22.309 -2.445 3 X_A3:U110_Y X 3 ? Y 110 ? 20 1 1 A U 4 1_555 B A 53 1_555 0.379 -0.056 0.315 -1.233 -20.577 2.836 4 X_U4:A109_Y X 4 ? Y 109 ? 20 1 1 A C 5 1_555 B G 52 1_555 1.127 -0.399 0.375 -1.570 -13.976 -1.794 5 X_C5:G108_Y X 5 ? Y 108 ? 19 1 1 A U 6 1_555 B A 51 1_555 -0.559 -0.056 0.220 -5.193 -15.392 2.961 6 X_U6:A107_Y X 6 ? Y 107 ? 20 1 1 A U 7 1_555 B A 50 1_555 0.142 -0.088 -0.267 9.548 -13.397 1.683 7 X_U7:A106_Y X 7 ? Y 106 ? 20 1 1 A C 8 1_555 B G 49 1_555 0.341 -0.026 0.121 3.675 -15.046 4.002 8 X_C8:G105_Y X 8 ? Y 105 ? 19 1 1 A G 9 1_555 B A 48 1_555 6.497 -4.103 0.633 -29.321 -47.540 -10.241 9 X_G9:A104_Y X 9 ? Y 104 ? 11 10 1 A G 10 1_555 A G 47 1_555 -3.050 -2.705 -0.024 26.510 -7.141 84.245 10 X_G10:G47_X X 10 ? X 47 ? 6 3 1 A G 33 1_555 A C 46 1_555 -0.545 -0.001 0.511 8.620 -19.565 4.579 11 X_G33:C46_X X 33 ? X 46 ? 19 1 1 A U 34 1_555 A A 45 1_555 -0.047 -0.024 -0.128 11.532 -21.879 4.723 12 X_U34:A45_X X 34 ? X 45 ? 20 1 1 A G 35 1_555 A C 44 1_555 -0.714 -0.252 -0.022 -10.961 -18.637 0.892 13 X_G35:C44_X X 35 ? X 44 ? 19 1 1 A G 36 1_555 A C 43 1_555 -0.414 -0.281 -0.027 -14.175 -14.308 0.118 14 X_G36:C43_X X 36 ? X 43 ? 19 1 1 A U 37 1_555 A A 40 1_555 4.449 -2.528 0.116 5.752 3.431 -95.746 15 X_U37:A40_X X 37 ? X 40 ? 24 4 1 A A 22 1_555 A U 18 1_555 -4.475 -2.503 1.045 0.574 15.765 -88.541 16 X_A22:U18_X X 22 ? X 18 ? 24 4 1 A C 25 1_555 A G 17 1_555 0.133 -0.094 -0.162 20.942 -10.037 -2.359 17 X_C25:G17_X X 25 ? X 17 ? 19 1 1 A C 26 1_555 A G 16 1_555 0.534 -0.050 -0.151 2.031 -14.318 1.097 18 X_C26:G16_X X 26 ? X 16 ? 19 1 1 A C 27 1_555 A G 15 1_555 0.054 0.130 0.255 -7.532 -5.000 4.233 19 X_C27:G15_X X 27 ? X 15 ? 19 1 1 A G 28 1_555 A C 13 1_555 -4.259 0.700 0.779 12.058 -9.896 51.625 20 X_G28:C13_X X 28 ? X 13 ? ? 5 1 A A 29 1_555 B U 38 1_555 0.385 -0.048 -0.289 -10.553 -14.698 -6.338 21 X_A29:U94_Y X 29 ? Y 94 ? 20 1 1 A C 30 1_555 B G 37 1_555 0.475 -0.151 0.193 -5.175 -20.315 3.054 22 X_C30:G93_Y X 30 ? Y 93 ? 19 1 1 A C 31 1_555 B G 28 1_555 0.053 0.040 0.072 -13.685 -8.058 -0.260 23 X_C31:G84_Y X 31 ? Y 84 ? 19 1 1 A G 32 1_555 B C 27 1_555 -0.610 -0.333 0.172 4.900 -10.353 -2.910 24 X_G32:C83_Y X 32 ? Y 83 ? 19 1 1 A G 41 1_555 B C 26 1_555 -0.253 -0.106 0.273 3.128 -19.821 3.776 25 X_G41:C82_Y X 41 ? Y 82 ? 19 1 1 A U 42 1_555 B A 25 1_555 -0.182 -0.101 -0.319 3.683 -5.126 -6.467 26 X_U42:A81_Y X 42 ? Y 81 ? 20 1 1 B U 8 1_555 B A 24 1_555 -0.455 0.039 0.366 0.065 -2.002 15.500 27 Y_U64:A80_Y Y 64 ? Y 80 ? ? 1 1 B U 9 1_555 B A 23 1_555 -0.325 -0.066 -0.117 4.230 -18.064 2.971 28 Y_U65:A79_Y Y 65 ? Y 79 ? 20 1 1 B U 10 1_555 B A 22 1_555 0.017 -0.015 -0.019 11.015 -10.209 5.248 29 Y_U66:A78_Y Y 66 ? Y 78 ? 20 1 1 B G 11 1_555 B C 21 1_555 0.045 -0.094 0.134 -5.559 -14.325 2.008 30 Y_G67:C77_Y Y 67 ? Y 77 ? 19 1 1 B G 12 1_555 B C 20 1_555 0.048 0.122 0.292 -13.997 -10.316 1.548 31 Y_G68:C76_Y Y 68 ? Y 76 ? 19 1 1 B U 13 1_555 B A 17 1_555 4.604 -2.112 1.052 2.279 10.234 -91.876 32 Y_U69:A73_Y Y 69 ? Y 73 ? 24 4 1 B G 14 1_555 A A 38 1_555 6.657 -4.325 1.005 12.487 15.564 -5.585 33 Y_G70:A38_X Y 70 ? X 38 ? 11 10 1 A A 49 1_555 B U 4 1_555 -1.027 -0.049 0.025 13.138 -14.509 0.028 34 X_A49:U60_Y X 49 ? Y 60 ? 20 1 1 A A 50 1_555 B U 3 1_555 0.105 -0.083 0.000 3.889 -18.852 1.441 35 X_A50:U59_Y X 50 ? Y 59 ? 20 1 1 A G 51 1_555 B C 2 1_555 0.471 -0.181 0.136 -6.176 -16.108 -1.446 36 X_G51:C58_Y X 51 ? Y 58 ? 19 1 1 A C 52 1_555 B G 1 1_555 0.375 -0.079 0.352 -9.968 -11.572 0.829 37 X_C52:G57_Y X 52 ? Y 57 ? 19 1 1 B A 29 1_555 B G 42 1_555 0.114 1.359 -0.473 6.981 -13.549 -12.432 38 Y_A85:G98_Y Y 85 ? Y 98 ? 8 1 1 B C 30 1_555 B G 41 1_555 0.344 -0.049 -0.024 14.561 -22.722 5.460 39 Y_C86:G97_Y Y 86 ? Y 97 ? 19 1 1 B A 31 1_555 B U 40 1_555 0.249 -0.108 0.390 -4.600 -24.650 6.723 40 Y_A87:U96_Y Y 87 ? Y 96 ? 20 1 1 B G 32 1_555 B C 39 1_555 -0.384 -0.179 0.180 -16.687 -21.761 -5.210 41 Y_G88:C95_Y Y 88 ? Y 95 ? 19 1 1 B U 33 1_555 B A 36 1_555 4.445 -2.581 -0.297 11.340 2.279 -92.694 42 Y_U89:A92_Y Y 89 ? Y 92 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 56 1_555 A G 2 1_555 B U 55 1_555 0.364 -1.974 2.949 -1.727 6.595 24.773 -5.968 -1.219 2.324 15.013 3.931 25.679 1 XX_G1G2:U111C112_YY X 1 ? Y 112 ? X 2 ? Y 111 ? 1 A G 2 1_555 B U 55 1_555 A A 3 1_555 B U 54 1_555 -0.211 -1.259 3.238 -0.821 6.510 34.889 -2.978 0.231 2.966 10.740 1.355 35.482 2 XX_G2A3:U110U111_YY X 2 ? Y 111 ? X 3 ? Y 110 ? 1 A A 3 1_555 B U 54 1_555 A U 4 1_555 B A 53 1_555 0.022 -1.643 3.186 -1.365 5.447 34.087 -3.556 -0.235 2.894 9.214 2.309 34.533 3 XX_A3U4:A109U110_YY X 3 ? Y 110 ? X 4 ? Y 109 ? 1 A U 4 1_555 B A 53 1_555 A C 5 1_555 B G 52 1_555 0.380 -1.980 3.125 1.172 4.844 31.170 -4.462 -0.500 2.805 8.943 -2.164 31.556 4 XX_U4C5:G108A109_YY X 4 ? Y 109 ? X 5 ? Y 108 ? 1 A C 5 1_555 B G 52 1_555 A U 6 1_555 B A 51 1_555 -0.807 -2.246 3.111 -0.526 7.186 22.648 -7.472 1.812 2.315 17.731 1.299 23.753 5 XX_C5U6:A107G108_YY X 5 ? Y 108 ? X 6 ? Y 107 ? 1 A U 6 1_555 B A 51 1_555 A U 7 1_555 B A 50 1_555 0.232 -0.738 2.970 1.531 -0.192 34.036 -1.232 -0.174 2.981 -0.327 -2.614 34.069 6 XX_U6U7:A106A107_YY X 6 ? Y 107 ? X 7 ? Y 106 ? 1 A U 7 1_555 B A 50 1_555 A C 8 1_555 B G 49 1_555 0.695 -1.630 3.370 -0.323 5.746 34.086 -3.623 -1.219 3.056 9.717 0.546 34.554 7 XX_U7C8:G105A106_YY X 7 ? Y 106 ? X 8 ? Y 105 ? 1 A C 8 1_555 B G 49 1_555 A G 9 1_555 B A 48 1_555 -2.860 -0.838 4.366 6.415 26.224 49.222 -2.787 3.522 3.212 29.102 -7.119 55.732 8 XX_C8G9:A104G105_YY X 8 ? Y 105 ? X 9 ? Y 104 ? 1 A G 10 1_555 A G 47 1_555 A G 33 1_555 A C 46 1_555 1.728 -4.324 -2.541 139.004 -81.872 46.052 -2.214 -0.921 2.378 -43.808 -74.377 162.823 9 XX_G10G33:C46G47_XX X 10 ? X 47 ? X 33 ? X 46 ? 1 A G 33 1_555 A C 46 1_555 A U 34 1_555 A A 45 1_555 -0.731 -2.027 3.128 -0.492 1.214 30.562 -4.070 1.294 3.058 2.302 0.934 30.589 10 XX_G33U34:A45C46_XX X 33 ? X 46 ? X 34 ? X 45 ? 1 A U 34 1_555 A A 45 1_555 A G 35 1_555 A C 44 1_555 -0.241 -1.377 3.649 -3.362 17.371 30.724 -4.881 -0.109 2.546 29.880 5.783 35.348 11 XX_U34G35:C44A45_XX X 34 ? X 45 ? X 35 ? X 44 ? 1 A G 35 1_555 A C 44 1_555 A G 36 1_555 A C 43 1_555 0.414 -1.778 3.353 2.362 6.297 35.796 -3.707 -0.340 3.028 10.134 -3.801 36.402 12 XX_G35G36:C43C44_XX X 35 ? X 44 ? X 36 ? X 43 ? 1 A G 36 1_555 A C 43 1_555 A U 37 1_555 A A 40 1_555 -0.912 -1.478 2.890 5.872 7.199 85.440 -1.225 0.784 2.729 5.292 -4.316 85.846 13 XX_G36U37:A40C43_XX X 36 ? X 43 ? X 37 ? X 40 ? 1 A A 22 1_555 A U 18 1_555 A C 25 1_555 A G 17 1_555 2.349 -1.983 3.009 1.186 1.843 74.935 -1.681 -1.897 2.998 1.514 -0.975 74.963 14 XX_A22C25:G17U18_XX X 22 ? X 18 ? X 25 ? X 17 ? 1 A C 25 1_555 A G 17 1_555 A C 26 1_555 A G 16 1_555 -0.009 -2.208 3.647 -3.079 7.334 38.553 -4.199 -0.372 3.182 10.966 4.603 39.334 15 XX_C25C26:G16G17_XX X 25 ? X 17 ? X 26 ? X 16 ? 1 A C 26 1_555 A G 16 1_555 A C 27 1_555 A G 15 1_555 -0.836 -2.448 3.401 -5.286 9.390 23.794 -7.807 0.509 2.405 21.422 12.059 26.088 16 XX_C26C27:G15G16_XX X 26 ? X 16 ? X 27 ? X 15 ? 1 A C 27 1_555 A G 15 1_555 A G 28 1_555 A C 13 1_555 6.154 0.137 2.828 -1.274 1.352 35.448 0.060 -10.250 2.616 2.219 2.091 35.495 17 XX_C27G28:C13G15_XX X 27 ? X 15 ? X 28 ? X 13 ? 1 A G 28 1_555 A C 13 1_555 A A 29 1_555 B U 38 1_555 -1.808 -1.245 3.846 3.575 0.941 54.544 -1.422 2.218 3.710 1.025 -3.896 54.659 18 XX_G28A29:U94C13_YX X 28 ? X 13 ? X 29 ? Y 94 ? 1 A A 29 1_555 B U 38 1_555 A C 30 1_555 B G 37 1_555 1.212 -1.400 3.064 0.559 3.805 36.054 -2.739 -1.876 2.924 6.126 -0.900 36.252 19 XX_A29C30:G93U94_YY X 29 ? Y 94 ? X 30 ? Y 93 ? 1 A C 30 1_555 B G 37 1_555 A C 31 1_555 B G 28 1_555 -0.941 -1.753 3.344 2.184 8.874 27.357 -5.366 2.344 2.578 18.133 -4.463 28.816 20 XX_C30C31:G84G93_YY X 30 ? Y 93 ? X 31 ? Y 84 ? 1 A C 31 1_555 B G 28 1_555 A G 32 1_555 B C 27 1_555 -0.176 0.158 2.925 0.292 14.154 24.702 -2.640 0.420 2.625 30.131 -0.623 28.417 21 XX_C31G32:C83G84_YY X 31 ? Y 84 ? X 32 ? Y 83 ? 1 A G 32 1_555 B C 27 1_555 A G 41 1_555 B C 26 1_555 0.812 -1.465 3.316 -1.216 3.883 35.048 -2.985 -1.518 3.112 6.421 2.011 35.276 22 XX_G32G41:C82C83_YY X 32 ? Y 83 ? X 41 ? Y 82 ? 1 A G 41 1_555 B C 26 1_555 A U 42 1_555 B A 25 1_555 -1.107 -1.831 3.197 2.179 4.264 35.774 -3.521 2.076 2.896 6.902 -3.528 36.083 23 XX_G41U42:A81C82_YY X 41 ? Y 82 ? X 42 ? Y 81 ? 1 A U 42 1_555 B A 25 1_555 B U 8 1_555 B A 24 1_555 0.566 -3.147 3.357 -6.567 3.855 22.888 -8.678 -3.301 2.542 9.387 15.991 24.105 24 XY_U42U64:A80A81_YY X 42 ? Y 81 ? Y 64 ? Y 80 ? 1 B U 8 1_555 B A 24 1_555 B U 9 1_555 B A 23 1_555 -0.679 -0.778 3.063 2.903 0.513 31.437 -1.518 1.746 2.978 0.944 -5.344 31.571 25 YY_U64U65:A79A80_YY Y 64 ? Y 80 ? Y 65 ? Y 79 ? 1 B U 9 1_555 B A 23 1_555 B U 10 1_555 B A 22 1_555 0.038 -1.326 3.088 -3.030 6.734 31.033 -3.520 -0.567 2.732 12.368 5.565 31.879 26 YY_U65U66:A78A79_YY Y 65 ? Y 79 ? Y 66 ? Y 78 ? 1 B U 10 1_555 B A 22 1_555 B G 11 1_555 B C 21 1_555 0.243 -1.542 3.298 1.479 17.312 35.132 -4.201 -0.202 2.324 26.755 -2.285 39.072 27 YY_U66G67:C77A78_YY Y 66 ? Y 78 ? Y 67 ? Y 77 ? 1 B G 11 1_555 B C 21 1_555 B G 12 1_555 B C 20 1_555 0.513 -1.823 3.277 2.062 7.029 36.729 -3.724 -0.541 2.915 11.020 -3.233 37.427 28 YY_G67G68:C76C77_YY Y 67 ? Y 77 ? Y 68 ? Y 76 ? 1 B G 12 1_555 B C 20 1_555 B U 13 1_555 B A 17 1_555 -3.063 -1.810 3.151 -1.842 2.661 72.708 -1.610 2.523 3.158 2.244 1.553 72.770 29 YY_G68U69:A73C76_YY Y 68 ? Y 76 ? Y 69 ? Y 73 ? 1 B U 13 1_555 B A 17 1_555 B G 14 1_555 A A 38 1_555 0.903 -0.609 2.989 6.842 1.536 -2.412 0.776 24.496 0.266 -15.557 69.320 -7.415 30 YY_U69G70:A38A73_XY Y 69 ? Y 73 ? Y 70 ? X 38 ? 1 A A 49 1_555 B U 4 1_555 A A 50 1_555 B U 3 1_555 -0.444 -1.302 3.398 -3.378 6.501 37.309 -2.838 0.247 3.162 10.044 5.219 37.997 31 XX_A49A50:U59U60_YY X 49 ? Y 60 ? X 50 ? Y 59 ? 1 A A 50 1_555 B U 3 1_555 A G 51 1_555 B C 2 1_555 -0.496 -1.690 3.407 -1.617 8.448 34.468 -3.991 0.581 2.943 13.988 2.678 35.494 32 XX_A50G51:C58U59_YY X 50 ? Y 59 ? X 51 ? Y 58 ? 1 A G 51 1_555 B C 2 1_555 A C 52 1_555 B G 1 1_555 0.379 -1.661 3.255 2.077 4.110 32.252 -3.655 -0.325 3.043 7.352 -3.716 32.570 33 XX_G51C52:G57C58_YY X 51 ? Y 58 ? X 52 ? Y 57 ? 1 B A 29 1_555 B G 42 1_555 B C 30 1_555 B G 41 1_555 1.328 -1.053 2.990 -4.507 4.051 34.886 -2.252 -2.763 2.668 6.694 7.449 35.393 34 YY_A85C86:G97G98_YY Y 85 ? Y 98 ? Y 86 ? Y 97 ? 1 B C 30 1_555 B G 41 1_555 B A 31 1_555 B U 40 1_555 -0.415 -1.750 3.428 -2.942 17.985 34.132 -4.723 0.289 2.285 28.282 4.626 38.565 35 YY_C86A87:U96G97_YY Y 86 ? Y 97 ? Y 87 ? Y 96 ? 1 B A 31 1_555 B U 40 1_555 B G 32 1_555 B C 39 1_555 -0.310 -1.573 3.291 4.207 12.044 33.799 -4.117 1.051 2.545 19.858 -6.936 36.060 36 YY_A87G88:C95U96_YY Y 87 ? Y 96 ? Y 88 ? Y 95 ? 1 B G 32 1_555 B C 39 1_555 B U 33 1_555 B A 36 1_555 -1.021 -0.977 2.725 6.210 -1.592 82.374 -0.708 0.900 2.672 -1.207 -4.708 82.579 37 YY_G88U89:A92C95_YY Y 88 ? Y 95 ? Y 89 ? Y 92 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'POTASSIUM ION' K 4 'MAGNESIUM ION' MG 5 '(6M)-2-[(3S)-1-{[2-(methylamino)pyrimidin-5-yl]methyl}piperidin-3-yl]-6-(thiophen-2-yl)pyrimidin-4-ol' 51B # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3F4E _pdbx_initial_refinement_model.details ? #