HEADER OXIDOREDUCTASE 18-JUN-15 5C4N TITLE COBK PRECORRIN-6A REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRECORRIN-6A REDUCTASE; COMPND 3 CHAIN: D; COMPND 4 SYNONYM: PRECORRIN-6X REDUCTASE; COMPND 5 EC: 1.3.1.54; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS (STRAIN ATCC BAA-309 / SOURCE 3 NBRC 16581 / SB1003); SOURCE 4 ORGANISM_TAXID: 272942; SOURCE 5 GENE: COBK, RCAP_RCC02043; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS COBK PRECORRIN-6A REDUCTASE, NADP, ROSSMANN FOLD, PRECORRIN, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GU,R.W.PICKERSGILL REVDAT 3 06-NOV-24 5C4N 1 REMARK REVDAT 2 30-AUG-17 5C4N 1 REMARK REVDAT 1 09-DEC-15 5C4N 0 JRNL AUTH S.GU JRNL TITL CRYSTAL STRUCTURE OF COBK JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1645 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.741 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1881 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1800 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2580 ; 2.303 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4118 ; 0.994 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 6.375 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;31.441 ;22.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 259 ;13.846 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;22.499 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2127 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 426 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 974 ; 2.460 ; 1.902 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 973 ; 2.451 ; 1.896 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1214 ; 3.751 ; 2.838 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1215 ; 3.757 ; 2.843 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 907 ; 3.690 ; 2.358 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 908 ; 3.691 ; 2.362 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1367 ; 5.499 ; 3.374 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2295 ; 9.249 ;18.055 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2179 ; 8.979 ;17.175 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5C4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000209167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 42.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100, PH 8, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.93500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.61000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.61000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.93500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG D 34 REMARK 465 THR D 35 REMARK 465 GLY D 36 REMARK 465 ALA D 37 REMARK 465 PRO D 38 REMARK 465 VAL D 39 REMARK 465 VAL D 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 412 O HOH D 508 1.13 REMARK 500 O HOH D 590 O HOH D 615 1.27 REMARK 500 O HOH D 428 O HOH D 617 1.30 REMARK 500 O HOH D 401 O HOH D 531 1.39 REMARK 500 O HOH D 549 O HOH D 595 1.41 REMARK 500 O HOH D 440 O HOH D 614 1.45 REMARK 500 O HOH D 554 O HOH D 595 1.52 REMARK 500 O HOH D 496 O HOH D 578 1.54 REMARK 500 O HOH D 421 O HOH D 532 1.55 REMARK 500 O HOH D 550 O HOH D 606 1.57 REMARK 500 O HOH D 496 O HOH D 619 1.67 REMARK 500 CB CYS D 95 O HOH D 604 1.71 REMARK 500 O HOH D 586 O HOH D 619 1.75 REMARK 500 O HOH D 600 O HOH D 607 1.76 REMARK 500 O HOH D 549 O HOH D 559 1.78 REMARK 500 O HOH D 578 O HOH D 627 1.88 REMARK 500 O HOH D 570 O HOH D 620 1.89 REMARK 500 O HOH D 483 O HOH D 551 1.90 REMARK 500 O HOH D 556 O HOH D 561 1.93 REMARK 500 OG SER D 187 O HOH D 401 1.93 REMARK 500 O HOH D 431 O HOH D 613 2.04 REMARK 500 CD LYS D 196 C4N NAP D 301 2.09 REMARK 500 O HOH D 600 O HOH D 646 2.11 REMARK 500 O HOH D 427 O HOH D 608 2.13 REMARK 500 CD LYS D 196 C5N NAP D 301 2.14 REMARK 500 O7N NAP D 301 O HOH D 402 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 518 O HOH D 622 1455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR D 31 CB TYR D 31 CG -0.116 REMARK 500 SER D 187 CB SER D 187 OG 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 115 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 GLU D 183 OE1 - CD - OE2 ANGL. DEV. = 9.6 DEGREES REMARK 500 GLU D 183 CG - CD - OE2 ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG D 186 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG D 186 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG D 211 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 133 59.01 -96.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X7G RELATED DB: PDB REMARK 900 WITH PRODUCT TRAPPED DBREF 5C4N D 1 251 UNP O68098 COBK_RHOCB 1 251 SEQRES 1 D 251 MET THR ARG LEU LEU VAL LEU GLY GLY THR THR GLU ALA SEQRES 2 D 251 SER ARG LEU ALA LYS THR LEU ALA ASP GLN GLY PHE GLU SEQRES 3 D 251 ALA VAL PHE SER TYR ALA GLY ARG THR GLY ALA PRO VAL SEQRES 4 D 251 ALA GLN PRO LEU PRO THR ARG ILE GLY GLY PHE GLY GLY SEQRES 5 D 251 VAL ALA GLY LEU VAL ASP TYR LEU THR ARG GLU GLY VAL SEQRES 6 D 251 SER HIS VAL ILE ASP ALA THR HIS PRO PHE ALA ALA GLN SEQRES 7 D 251 MET SER ALA ASN ALA VAL ALA ALA CYS ALA GLN THR GLY SEQRES 8 D 251 VAL ALA LEU CYS ALA PHE GLU ARG ALA PRO TRP THR ALA SEQRES 9 D 251 GLN ALA GLY ASP ARG TRP THR HIS VAL PRO ASP LEU ALA SEQRES 10 D 251 ALA ALA VAL ALA ALA LEU PRO GLN ALA PRO ALA ARG VAL SEQRES 11 D 251 PHE LEU ALA ILE GLY LYS GLN HIS LEU ARG ASP PHE SER SEQRES 12 D 251 ALA ALA PRO GLN HIS HIS TYR LEU LEU ARG LEU VAL ASP SEQRES 13 D 251 PRO PRO GLU GLY PRO LEU PRO LEU PRO ASP ALA ARG ALA SEQRES 14 D 251 VAL ILE ALA ARG GLY PRO PHE THR VAL GLN GLY ASP THR SEQRES 15 D 251 GLU LEU LEU ARG SER GLU THR ILE THR HIS VAL VAL ALA SEQRES 16 D 251 LYS ASN ALA GLY GLY ALA GLY ALA GLU ALA LYS LEU ILE SEQRES 17 D 251 ALA ALA ARG SER LEU GLY LEU PRO VAL ILE LEU ILE ASP SEQRES 18 D 251 ARG PRO ALA VAL PRO ALA ARG ASP ILE CYS ALA THR LEU SEQRES 19 D 251 GLU GLY VAL MET GLY TRP LEU ALA ASP HIS GLY ALA THR SEQRES 20 D 251 PRO ARG GLY VAL HET NAP D 301 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HOH *260(H2 O) HELIX 1 AA1 THR D 10 GLY D 24 1 15 HELIX 2 AA2 GLY D 51 GLY D 64 1 14 HELIX 3 AA3 ALA D 76 GLY D 91 1 16 HELIX 4 AA4 ASP D 115 LEU D 123 1 9 HELIX 5 AA5 HIS D 138 ALA D 145 5 8 HELIX 6 AA6 THR D 177 GLU D 188 1 12 HELIX 7 AA7 GLU D 204 GLY D 214 1 11 HELIX 8 AA8 THR D 233 HIS D 244 1 12 SHEET 1 AA1 6 THR D 45 ILE D 47 0 SHEET 2 AA1 6 ALA D 27 TYR D 31 1 N PHE D 29 O ARG D 46 SHEET 3 AA1 6 LEU D 4 LEU D 7 1 N VAL D 6 O VAL D 28 SHEET 4 AA1 6 HIS D 67 ASP D 70 1 O ILE D 69 N LEU D 5 SHEET 5 AA1 6 ALA D 93 ALA D 96 1 O CYS D 95 N ASP D 70 SHEET 6 AA1 6 ASP D 229 ILE D 230 1 O ASP D 229 N ALA D 96 SHEET 1 AA2 6 ARG D 109 VAL D 113 0 SHEET 2 AA2 6 PRO D 216 ILE D 220 1 O LEU D 219 N THR D 111 SHEET 3 AA2 6 HIS D 192 LYS D 196 1 N VAL D 193 O ILE D 218 SHEET 4 AA2 6 ARG D 129 ALA D 133 1 N PHE D 131 O VAL D 194 SHEET 5 AA2 6 HIS D 149 LEU D 154 1 O LEU D 151 N VAL D 130 SHEET 6 AA2 6 ALA D 167 ILE D 171 1 O ARG D 168 N LEU D 152 SSBOND 1 CYS D 95 CYS D 231 1555 1555 2.08 CISPEP 1 GLY D 174 PRO D 175 0 4.38 SITE 1 AC1 35 GLY D 8 SER D 30 TYR D 31 ALA D 32 SITE 2 AC1 35 GLY D 48 GLY D 49 PHE D 50 GLY D 51 SITE 3 AC1 35 GLY D 52 HIS D 73 PHE D 75 ALA D 76 SITE 4 AC1 35 ALA D 77 GLN D 78 MET D 79 ASN D 82 SITE 5 AC1 35 ALA D 133 ILE D 134 GLN D 137 LYS D 196 SITE 6 AC1 35 GLU D 235 HOH D 402 HOH D 404 HOH D 409 SITE 7 AC1 35 HOH D 443 HOH D 449 HOH D 450 HOH D 457 SITE 8 AC1 35 HOH D 475 HOH D 479 HOH D 495 HOH D 542 SITE 9 AC1 35 HOH D 544 HOH D 567 HOH D 572 CRYST1 33.870 73.140 103.220 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009688 0.00000