HEADER PROTEIN BINDING 19-JUN-15 5C50 TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN ATG101-ATG13 HORMA DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY-RELATED PROTEIN 101; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-198; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AUTOPHAGY-RELATED PROTEIN 13; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 12-200; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: GAMGS IS FROM VECTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATG101, C12ORF44, PP894; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: ATG13, KIAA0652; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS COMPLEX, PROTEIN BINDING, AUTOPHAGY, HORMA DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR S.QI,J.H.HURLEY REVDAT 6 06-MAR-24 5C50 1 REMARK REVDAT 5 25-DEC-19 5C50 1 REMARK REVDAT 4 27-SEP-17 5C50 1 REMARK REVDAT 3 04-NOV-15 5C50 1 JRNL REVDAT 2 21-OCT-15 5C50 1 JRNL REVDAT 1 14-OCT-15 5C50 0 JRNL AUTH S.QI,D.J.KIM,G.STJEPANOVIC,J.H.HURLEY JRNL TITL STRUCTURE OF THE HUMAN ATG13-ATG101 HORMA HETERODIMER: AN JRNL TITL 2 INTERACTION HUB WITHIN THE ULK1 COMPLEX. JRNL REF STRUCTURE V. 23 1848 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26299944 JRNL DOI 10.1016/J.STR.2015.07.011 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1819 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 49902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6724 - 4.2704 1.00 2726 139 0.1421 0.1583 REMARK 3 2 4.2704 - 3.3899 1.00 2688 129 0.1573 0.1699 REMARK 3 3 3.3899 - 2.9614 1.00 2659 144 0.1851 0.2150 REMARK 3 4 2.9614 - 2.6907 1.00 2659 153 0.1923 0.2035 REMARK 3 5 2.6907 - 2.4979 1.00 2655 142 0.1821 0.1969 REMARK 3 6 2.4979 - 2.3506 1.00 2632 134 0.1797 0.1976 REMARK 3 7 2.3506 - 2.2329 1.00 2635 149 0.1718 0.1675 REMARK 3 8 2.2329 - 2.1357 1.00 2668 108 0.1814 0.2081 REMARK 3 9 2.1357 - 2.0535 1.00 2663 130 0.1828 0.1920 REMARK 3 10 2.0535 - 1.9826 1.00 2630 158 0.1893 0.2111 REMARK 3 11 1.9826 - 1.9206 1.00 2664 130 0.1872 0.2128 REMARK 3 12 1.9206 - 1.8657 1.00 2627 128 0.1932 0.2187 REMARK 3 13 1.8657 - 1.8166 1.00 2635 148 0.2026 0.2354 REMARK 3 14 1.8166 - 1.7723 1.00 2621 156 0.2101 0.2407 REMARK 3 15 1.7723 - 1.7320 1.00 2582 149 0.2274 0.2624 REMARK 3 16 1.7320 - 1.6951 1.00 2679 132 0.2477 0.2938 REMARK 3 17 1.6951 - 1.6612 1.00 2642 109 0.2563 0.3005 REMARK 3 18 1.6612 - 1.6299 0.89 2386 113 0.2905 0.3401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3178 REMARK 3 ANGLE : 0.996 4293 REMARK 3 CHIRALITY : 0.043 484 REMARK 3 PLANARITY : 0.004 546 REMARK 3 DIHEDRAL : 14.537 1184 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5665 25.8600 34.9429 REMARK 3 T TENSOR REMARK 3 T11: 0.2562 T22: 0.2348 REMARK 3 T33: 0.2886 T12: -0.0138 REMARK 3 T13: -0.0055 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 3.1831 L22: 2.5511 REMARK 3 L33: 2.3474 L12: 1.5144 REMARK 3 L13: 1.0641 L23: 1.8013 REMARK 3 S TENSOR REMARK 3 S11: -0.3577 S12: 0.4744 S13: -0.4371 REMARK 3 S21: -0.4778 S22: 0.5466 S23: -0.0246 REMARK 3 S31: -0.1936 S32: 0.6312 S33: -0.6176 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5621 38.6335 23.4799 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 0.1070 REMARK 3 T33: 0.1727 T12: 0.0135 REMARK 3 T13: -0.0185 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 4.0051 L22: 0.2695 REMARK 3 L33: 3.4550 L12: -0.0386 REMARK 3 L13: 3.4390 L23: -0.2760 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.2068 S13: 0.1025 REMARK 3 S21: -0.1252 S22: -0.0111 S23: 0.0702 REMARK 3 S31: -0.2788 S32: 0.1143 S33: 0.1846 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7826 42.7954 25.7464 REMARK 3 T TENSOR REMARK 3 T11: 0.1609 T22: 0.0930 REMARK 3 T33: 0.1587 T12: 0.0077 REMARK 3 T13: -0.0092 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 6.1406 L22: 0.5824 REMARK 3 L33: 8.1212 L12: 0.6526 REMARK 3 L13: 5.0069 L23: 0.3529 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: -0.1725 S13: 0.0449 REMARK 3 S21: -0.0009 S22: 0.0126 S23: -0.0111 REMARK 3 S31: -0.1456 S32: 0.0822 S33: -0.0019 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0764 43.3301 38.4388 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.1572 REMARK 3 T33: 0.2149 T12: 0.0426 REMARK 3 T13: 0.0286 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 3.9474 L22: 7.7214 REMARK 3 L33: 6.8125 L12: 3.5075 REMARK 3 L13: -4.3611 L23: -6.9767 REMARK 3 S TENSOR REMARK 3 S11: 0.2997 S12: -0.1369 S13: 0.1651 REMARK 3 S21: 0.1460 S22: -0.0082 S23: 0.2655 REMARK 3 S31: -0.6486 S32: -0.0284 S33: -0.2393 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7024 31.1117 36.4763 REMARK 3 T TENSOR REMARK 3 T11: 0.1248 T22: 0.1697 REMARK 3 T33: 0.1867 T12: 0.0010 REMARK 3 T13: 0.0073 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 3.2046 L22: 3.3459 REMARK 3 L33: 3.0169 L12: 1.6216 REMARK 3 L13: 1.2278 L23: 3.1733 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: -0.1692 S13: -0.1530 REMARK 3 S21: -0.0533 S22: 0.0771 S23: 0.0920 REMARK 3 S31: 0.0718 S32: -0.1720 S33: 0.0326 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2811 23.3657 18.9454 REMARK 3 T TENSOR REMARK 3 T11: 0.7493 T22: 0.8186 REMARK 3 T33: 0.5658 T12: -0.3984 REMARK 3 T13: -0.0431 T23: 0.0609 REMARK 3 L TENSOR REMARK 3 L11: 2.1373 L22: 2.8599 REMARK 3 L33: 5.9940 L12: 0.5378 REMARK 3 L13: 3.4532 L23: 0.6480 REMARK 3 S TENSOR REMARK 3 S11: -0.3467 S12: 0.3432 S13: 0.6264 REMARK 3 S21: -0.9641 S22: 0.2007 S23: 0.9660 REMARK 3 S31: 1.2553 S32: -1.4268 S33: 0.3412 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0632 30.3866 38.2047 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1621 REMARK 3 T33: 0.1860 T12: 0.0351 REMARK 3 T13: -0.0010 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 8.1877 L22: 4.8066 REMARK 3 L33: 3.6812 L12: 5.4658 REMARK 3 L13: 5.4692 L23: 3.3530 REMARK 3 S TENSOR REMARK 3 S11: 0.5176 S12: -0.6984 S13: -0.1870 REMARK 3 S21: 0.4223 S22: -0.3532 S23: -0.1466 REMARK 3 S31: 0.8082 S32: -0.6685 S33: -0.2077 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5958 33.0910 38.5812 REMARK 3 T TENSOR REMARK 3 T11: 0.1960 T22: 0.2261 REMARK 3 T33: 0.2174 T12: 0.0020 REMARK 3 T13: 0.0140 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 6.8254 L22: 3.7695 REMARK 3 L33: 3.3390 L12: 1.8870 REMARK 3 L13: 4.2053 L23: 1.1507 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: -0.3289 S13: -0.1250 REMARK 3 S21: 0.3580 S22: -0.0842 S23: -0.0603 REMARK 3 S31: 0.3009 S32: 0.3630 S33: -0.1402 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3242 29.7877 13.8524 REMARK 3 T TENSOR REMARK 3 T11: 0.3904 T22: 0.3920 REMARK 3 T33: 0.2285 T12: -0.0762 REMARK 3 T13: -0.0775 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 9.2177 L22: 6.8508 REMARK 3 L33: 3.7600 L12: -3.5042 REMARK 3 L13: 4.7314 L23: -4.2468 REMARK 3 S TENSOR REMARK 3 S11: 0.1216 S12: 0.3143 S13: -0.2252 REMARK 3 S21: -0.6953 S22: 0.2020 S23: 0.2026 REMARK 3 S31: 0.8428 S32: -0.3821 S33: -0.4632 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0978 40.2630 19.2569 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.1911 REMARK 3 T33: 0.1629 T12: 0.0066 REMARK 3 T13: -0.0379 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 9.3870 L22: 7.1591 REMARK 3 L33: 7.3626 L12: 0.9988 REMARK 3 L13: 0.2295 L23: 1.2147 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: 0.1308 S13: 0.4434 REMARK 3 S21: -0.2543 S22: 0.1513 S23: 0.3256 REMARK 3 S31: -0.5923 S32: -0.3719 S33: -0.1533 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4120 32.6125 39.2583 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.2154 REMARK 3 T33: 0.2092 T12: 0.0563 REMARK 3 T13: 0.0272 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 5.8334 L22: 9.1604 REMARK 3 L33: 3.5407 L12: 3.5840 REMARK 3 L13: -3.0288 L23: -5.5770 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: -0.4010 S13: -0.3243 REMARK 3 S21: 0.1427 S22: -0.3058 S23: 0.0379 REMARK 3 S31: 0.3839 S32: 0.2392 S33: 0.2142 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.4369 36.3129 10.1087 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.2736 REMARK 3 T33: 0.1722 T12: -0.0351 REMARK 3 T13: 0.0307 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 5.7318 L22: 5.6120 REMARK 3 L33: 2.6614 L12: 2.5057 REMARK 3 L13: 3.0386 L23: 3.0438 REMARK 3 S TENSOR REMARK 3 S11: -0.1706 S12: 0.8884 S13: -0.3782 REMARK 3 S21: -0.3721 S22: 0.1823 S23: -0.0204 REMARK 3 S31: 0.0410 S32: 0.4787 S33: -0.0024 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3066 49.0165 21.6629 REMARK 3 T TENSOR REMARK 3 T11: 0.2904 T22: 0.2003 REMARK 3 T33: 0.2600 T12: -0.0314 REMARK 3 T13: -0.0109 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 6.2240 L22: 5.8223 REMARK 3 L33: 4.6579 L12: 1.8526 REMARK 3 L13: 5.2810 L23: 2.5401 REMARK 3 S TENSOR REMARK 3 S11: -0.4978 S12: -0.2119 S13: 0.7517 REMARK 3 S21: -0.0245 S22: 0.0719 S23: 0.1117 REMARK 3 S31: -0.6260 S32: -0.2327 S33: 0.8033 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7764 44.0171 10.4349 REMARK 3 T TENSOR REMARK 3 T11: 0.3404 T22: 0.3394 REMARK 3 T33: 0.2756 T12: 0.0003 REMARK 3 T13: -0.0657 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 3.5655 L22: 2.0972 REMARK 3 L33: 6.0047 L12: 0.5930 REMARK 3 L13: -3.7906 L23: 1.2153 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: 1.0871 S13: 0.7059 REMARK 3 S21: -0.3985 S22: -0.1207 S23: 0.3764 REMARK 3 S31: -0.8518 S32: -0.2969 S33: 0.2358 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.5843 35.3079 6.5278 REMARK 3 T TENSOR REMARK 3 T11: 0.3900 T22: 0.5926 REMARK 3 T33: 0.3401 T12: -0.0409 REMARK 3 T13: 0.1928 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 4.9044 L22: 9.4003 REMARK 3 L33: 4.7425 L12: -1.9244 REMARK 3 L13: -0.0659 L23: -0.1086 REMARK 3 S TENSOR REMARK 3 S11: -0.1580 S12: 1.2057 S13: -0.3418 REMARK 3 S21: -0.8191 S22: -0.3071 S23: -0.4779 REMARK 3 S31: 0.4543 S32: 0.5488 S33: 0.2317 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.1517 34.4462 21.6890 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.2428 REMARK 3 T33: 0.3218 T12: 0.0605 REMARK 3 T13: 0.0501 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.0002 L22: 8.7150 REMARK 3 L33: 8.6130 L12: 4.7066 REMARK 3 L13: 4.2442 L23: 6.4499 REMARK 3 S TENSOR REMARK 3 S11: -0.1212 S12: 0.5567 S13: -0.5403 REMARK 3 S21: -0.0156 S22: 0.3646 S23: -0.6945 REMARK 3 S31: 0.2402 S32: 0.7700 S33: -0.4073 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4885 18.3675 5.9610 REMARK 3 T TENSOR REMARK 3 T11: 1.0588 T22: 0.8237 REMARK 3 T33: 1.1086 T12: -0.2083 REMARK 3 T13: -0.0079 T23: -0.2285 REMARK 3 L TENSOR REMARK 3 L11: 3.2589 L22: 4.9274 REMARK 3 L33: 3.4001 L12: -2.5487 REMARK 3 L13: -1.7180 L23: -1.3524 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: 2.1281 S13: -0.8157 REMARK 3 S21: -1.6713 S22: 0.6800 S23: 0.9121 REMARK 3 S31: 0.7656 S32: -0.6371 S33: -0.6503 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8122 32.9556 16.0138 REMARK 3 T TENSOR REMARK 3 T11: 0.2459 T22: 0.2682 REMARK 3 T33: 0.2050 T12: -0.0741 REMARK 3 T13: 0.0120 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 7.5258 L22: 5.9381 REMARK 3 L33: 4.2625 L12: 3.7066 REMARK 3 L13: 4.8071 L23: 3.6794 REMARK 3 S TENSOR REMARK 3 S11: -0.2723 S12: 0.5062 S13: -0.2059 REMARK 3 S21: -0.4923 S22: 0.0945 S23: 0.2641 REMARK 3 S31: 0.1801 S32: -0.3497 S33: 0.1385 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.1913 40.6414 31.3644 REMARK 3 T TENSOR REMARK 3 T11: 0.2073 T22: 0.1927 REMARK 3 T33: 0.1908 T12: 0.0292 REMARK 3 T13: -0.0171 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 9.4705 L22: 9.3707 REMARK 3 L33: 3.6639 L12: 4.0440 REMARK 3 L13: -5.0141 L23: -4.6405 REMARK 3 S TENSOR REMARK 3 S11: -0.3355 S12: -0.4124 S13: -0.1882 REMARK 3 S21: 0.1119 S22: 0.1985 S23: -0.2018 REMARK 3 S31: 0.4363 S32: 0.2422 S33: 0.1159 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 144 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.2609 34.3719 22.5475 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.2820 REMARK 3 T33: 0.3216 T12: 0.0644 REMARK 3 T13: 0.0568 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 3.4836 L22: 1.6692 REMARK 3 L33: 4.4524 L12: 1.2947 REMARK 3 L13: 0.8853 L23: 0.8371 REMARK 3 S TENSOR REMARK 3 S11: -0.2170 S12: 0.2626 S13: -0.3332 REMARK 3 S21: 0.0916 S22: 0.2425 S23: -0.5152 REMARK 3 S31: 0.3987 S32: 0.5918 S33: -0.0290 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 169 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.0213 26.6616 21.9232 REMARK 3 T TENSOR REMARK 3 T11: 0.4212 T22: 0.1513 REMARK 3 T33: 0.3630 T12: 0.0502 REMARK 3 T13: 0.1339 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 6.4623 L22: 3.1985 REMARK 3 L33: 5.3483 L12: 0.7148 REMARK 3 L13: 0.9891 L23: -0.0173 REMARK 3 S TENSOR REMARK 3 S11: -0.4870 S12: 0.0854 S13: -0.7411 REMARK 3 S21: 0.1546 S22: 0.1388 S23: -0.2528 REMARK 3 S31: 0.3468 S32: 0.1208 S33: 0.1458 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C50 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07207 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 0.5 M BENZAMIDINE, AND REMARK 280 0.2 M LITHIUM CITRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.86100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.22350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.86100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.22350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -5 REMARK 465 ALA B -4 REMARK 465 MET B -3 REMARK 465 GLY B -2 REMARK 465 MET B 196 REMARK 465 SER B 197 REMARK 465 THR B 198 REMARK 465 ARG B 199 REMARK 465 GLN B 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 52 O HOH A 303 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 111 57.42 -91.87 REMARK 500 LYS B 106 49.95 39.52 REMARK 500 LYS B 112 -153.54 -99.43 REMARK 500 HIS B 146 -80.53 -104.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEN B 302 DBREF 5C50 A 1 198 UNP Q9BSB4 ATGA1_HUMAN 1 198 DBREF 5C50 B 12 200 UNP O75143 ATG13_HUMAN 12 200 SEQADV 5C50 GLY B -5 UNP O75143 EXPRESSION TAG SEQADV 5C50 ALA B -4 UNP O75143 EXPRESSION TAG SEQADV 5C50 MET B -3 UNP O75143 EXPRESSION TAG SEQADV 5C50 GLY B -2 UNP O75143 EXPRESSION TAG SEQADV 5C50 SER B -1 UNP O75143 EXPRESSION TAG SEQRES 1 A 198 MET ASN CYS ARG SER GLU VAL LEU GLU VAL SER VAL GLU SEQRES 2 A 198 GLY ARG GLN VAL GLU GLU ALA MET LEU ALA VAL LEU HIS SEQRES 3 A 198 THR VAL LEU LEU HIS ARG SER THR GLY LYS PHE HIS TYR SEQRES 4 A 198 LYS LYS GLU GLY THR TYR SER ILE GLY THR VAL GLY THR SEQRES 5 A 198 GLN ASP VAL ASP CYS ASP PHE ILE ASP PHE THR TYR VAL SEQRES 6 A 198 ARG VAL SER SER GLU GLU LEU ASP ARG ALA LEU ARG LYS SEQRES 7 A 198 VAL VAL GLY GLU PHE LYS ASP ALA LEU ARG ASN SER GLY SEQRES 8 A 198 GLY ASP GLY LEU GLY GLN MET SER LEU GLU PHE TYR GLN SEQRES 9 A 198 LYS LYS LYS SER ARG TRP PRO PHE SER ASP GLU CYS ILE SEQRES 10 A 198 PRO TRP GLU VAL TRP THR VAL LYS VAL HIS VAL VAL ALA SEQRES 11 A 198 LEU ALA THR GLU GLN GLU ARG GLN ILE CYS ARG GLU LYS SEQRES 12 A 198 VAL GLY GLU LYS LEU CYS GLU LYS ILE ILE ASN ILE VAL SEQRES 13 A 198 GLU VAL MET ASN ARG HIS GLU TYR LEU PRO LYS MET PRO SEQRES 14 A 198 THR GLN SER GLU VAL ASP ASN VAL PHE ASP THR GLY LEU SEQRES 15 A 198 ARG ASP VAL GLN PRO TYR LEU TYR LYS ILE SER PHE GLN SEQRES 16 A 198 ILE THR ASP SEQRES 1 B 194 GLY ALA MET GLY SER ASP LEU ASP LYS PHE ILE LYS PHE SEQRES 2 B 194 PHE ALA LEU LYS THR VAL GLN VAL ILE VAL GLN ALA ARG SEQRES 3 B 194 LEU GLY GLU LYS ILE CYS THR ARG SER SER SER SER PRO SEQRES 4 B 194 THR GLY SER ASP TRP PHE ASN LEU ALA ILE LYS ASP ILE SEQRES 5 B 194 PRO GLU VAL THR HIS GLU ALA LYS LYS ALA LEU ALA GLY SEQRES 6 B 194 GLN LEU PRO ALA VAL GLY ARG SER MET CYS VAL GLU ILE SEQRES 7 B 194 SER LEU LYS THR SER GLU GLY ASP SER MET GLU LEU GLU SEQRES 8 B 194 ILE TRP CYS LEU GLU MET ASN GLU LYS CYS ASP LYS GLU SEQRES 9 B 194 ILE LYS VAL SER TYR THR VAL TYR ASN ARG LEU SER LEU SEQRES 10 B 194 LEU LEU LYS SER LEU LEU ALA ILE THR ARG VAL THR PRO SEQRES 11 B 194 ALA TYR ARG LEU SER ARG LYS GLN GLY HIS GLU TYR VAL SEQRES 12 B 194 ILE LEU TYR ARG ILE TYR PHE GLY GLU VAL GLN LEU SER SEQRES 13 B 194 GLY LEU GLY GLU GLY PHE GLN THR VAL ARG VAL GLY THR SEQRES 14 B 194 VAL GLY THR PRO VAL GLY THR ILE THR LEU SER CYS ALA SEQRES 15 B 194 TYR ARG ILE ASN LEU ALA PHE MET SER THR ARG GLN HET BEN A 201 16 HET BEN A 202 17 HET BEN A 203 16 HET BEN B 301 16 HET BEN B 302 16 HETNAM BEN BENZAMIDINE FORMUL 3 BEN 5(C7 H8 N2) FORMUL 8 HOH *197(H2 O) HELIX 1 AA1 GLN A 16 ARG A 32 1 17 HELIX 2 AA2 SER A 69 SER A 90 1 22 HELIX 3 AA3 THR A 133 HIS A 162 1 30 HELIX 4 AA4 THR A 170 VAL A 177 5 8 HELIX 5 AA5 ASP B 12 ALA B 31 1 20 HELIX 6 AA6 ILE B 58 ALA B 70 1 13 HELIX 7 AA7 VAL B 113 THR B 132 1 20 HELIX 8 AA8 PRO B 136 LYS B 143 1 8 SHEET 1 AA1 4 ARG A 4 GLU A 13 0 SHEET 2 AA1 4 CYS A 116 VAL A 129 1 O LYS A 125 N LEU A 8 SHEET 3 AA1 4 LEU A 95 LYS A 105 -1 N PHE A 102 O GLU A 120 SHEET 4 AA1 4 TYR A 190 ASP A 198 -1 O LYS A 191 N GLU A 101 SHEET 1 AA2 2 SER A 33 THR A 34 0 SHEET 2 AA2 2 GLN A 186 PRO A 187 -1 O GLN A 186 N THR A 34 SHEET 1 AA3 2 PHE A 37 TYR A 39 0 SHEET 2 AA3 2 TYR A 45 ILE A 47 -1 O SER A 46 N HIS A 38 SHEET 1 AA4 2 THR A 52 ASP A 56 0 SHEET 2 AA4 2 THR A 63 VAL A 67 -1 O TYR A 64 N VAL A 55 SHEET 1 AA5 5 TYR B 148 GLY B 157 0 SHEET 2 AA5 5 SER B 79 THR B 88 -1 N CYS B 81 O TYR B 155 SHEET 3 AA5 5 SER B 93 MET B 103 -1 O MET B 94 N LEU B 86 SHEET 4 AA5 5 GLY B 181 TYR B 189 -1 O THR B 184 N GLU B 102 SHEET 5 AA5 5 GLN B 169 THR B 178 -1 N VAL B 176 O ILE B 183 SITE 1 AC1 4 THR A 44 TYR A 45 TYR B 115 TYR B 118 SITE 1 AC2 7 VAL A 10 LEU A 95 GLY A 96 LYS A 125 SITE 2 AC2 7 VAL A 126 HIS A 127 HOH A 385 SITE 1 AC3 7 LEU A 131 THR A 133 GLU A 134 ARG A 137 SITE 2 AC3 7 HOH A 339 SER B 89 GLU B 90 SITE 1 AC4 4 ASP A 56 ARG B 139 ARG B 142 HOH B 417 SITE 1 AC5 7 ARG A 109 TRP A 110 PRO A 111 PHE A 112 SITE 2 AC5 7 LYS A 167 ASP B 57 ILE B 58 CRYST1 67.722 64.447 94.120 90.00 97.54 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014766 0.000000 0.001954 0.00000 SCALE2 0.000000 0.015517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010717 0.00000