HEADER LYASE 19-JUN-15 5C55 TITLE CRYSTAL STRUCTURE OF THE Y138F MUTANT OF C.GLUTAMICUM N- TITLE 2 ACETYLNEURAMINIC ACID LYASE IN COMPLEX WITH PYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRODIPICOLINATE SYNTHASE/N-ACETYLNEURAMINATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.3.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM ATCC 13032; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 STRAIN: ATCC 13032; SOURCE 5 GENE: CGL2646; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, ALDOLASE TYPE TIM BARREL, SCHIFF BASE INTERMEDIATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHEN,J.ZHOU,J.XIE REVDAT 3 15-NOV-23 5C55 1 LINK ATOM REVDAT 2 08-NOV-23 5C55 1 REMARK REVDAT 1 22-JUN-16 5C55 0 JRNL AUTH Y.SHEN,J.ZHOU,J.XIE JRNL TITL CRYSTAL STRUCTURE OF THE Y138F MUTANT OF C.GLUTAMICUM JRNL TITL 2 N-ACETYLNEURAMINIC ACID LYASE IN COMPLEX WITH PYRUVATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 62510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3345 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 235 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4543 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.709 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4700 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4562 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6374 ; 1.855 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10479 ; 0.893 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 615 ; 5.491 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;38.932 ;24.239 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 729 ;11.215 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.989 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 761 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5321 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1005 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5C55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65906 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5C54 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 32% PEG 3350, 0.6 M REMARK 280 AMMONIUM ACETATE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.72200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.72200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.94650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.97950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.94650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.97950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.72200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.94650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.97950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.72200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.94650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.97950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 55.89300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -71.72200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 312 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 ALA B 4 REMARK 465 THR B 311 REMARK 465 ALA B 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 653 O HOH A 667 1.80 REMARK 500 O2 EDO A 410 O HOH A 501 1.95 REMARK 500 O HOH B 652 O HOH B 675 2.02 REMARK 500 O HOH A 662 O HOH A 686 2.03 REMARK 500 O HOH B 642 O HOH B 644 2.04 REMARK 500 O HOH B 649 O HOH B 673 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 685 O HOH A 692 3554 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 46 38.39 71.21 REMARK 500 TYR A 111 -66.36 73.55 REMARK 500 ALA A 130 67.06 -156.00 REMARK 500 TYR B 111 -64.74 72.05 REMARK 500 ALA B 130 66.28 -154.25 REMARK 500 PRO B 289 32.42 -95.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PYR A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PYR B 402 and LYS B REMARK 800 166 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C54 RELATED DB: PDB DBREF 5C55 A 1 312 UNP Q8NMD2 Q8NMD2_CORGL 1 312 DBREF 5C55 B 1 312 UNP Q8NMD2 Q8NMD2_CORGL 1 312 SEQADV 5C55 PHE A 138 UNP Q8NMD2 TYR 138 ENGINEERED MUTATION SEQADV 5C55 PHE B 138 UNP Q8NMD2 TYR 138 ENGINEERED MUTATION SEQRES 1 A 312 MET ALA SER ALA THR PHE THR GLY VAL ILE PRO PRO VAL SEQRES 2 A 312 MET THR PRO LEU HIS ALA ASP GLY SER VAL ASP VAL GLU SEQRES 3 A 312 SER LEU ARG LYS LEU VAL ASP HIS LEU ILE ASN GLY GLY SEQRES 4 A 312 VAL ASP GLY LEU PHE ALA LEU GLY SER SER GLY GLU ALA SEQRES 5 A 312 ALA PHE LEU THR ARG ALA GLN ARG LYS LEU ALA LEU THR SEQRES 6 A 312 THR ILE ILE GLU HIS THR ALA GLY ARG VAL PRO VAL THR SEQRES 7 A 312 ALA GLY VAL ILE GLU THR THR THR ALA ARG VAL ILE GLU SEQRES 8 A 312 LEU VAL GLU ASP ALA LEU GLU ALA GLY ALA GLU GLY LEU SEQRES 9 A 312 VAL ALA THR ALA PRO PHE TYR THR ARG THR HIS ASP VAL SEQRES 10 A 312 GLU ILE GLU GLU HIS PHE ARG LYS ILE HIS ALA ALA ALA SEQRES 11 A 312 PRO GLU LEU PRO LEU PHE ALA PHE ASN ILE PRO VAL SER SEQRES 12 A 312 VAL HIS SER ASN LEU ASN PRO VAL MET LEU LEU THR LEU SEQRES 13 A 312 ALA LYS ASP GLY VAL LEU ALA GLY THR LYS ASP SER SER SEQRES 14 A 312 GLY ASN ASP GLY ALA ILE ARG SER LEU ILE GLU ALA ARG SEQRES 15 A 312 ASP ASP ALA GLY LEU THR GLU GLN PHE LYS ILE LEU THR SEQRES 16 A 312 GLY SER GLU THR THR VAL ASP PHE ALA TYR LEU ALA GLY SEQRES 17 A 312 ALA ASP GLY VAL VAL PRO GLY LEU GLY ASN VAL ASP PRO SEQRES 18 A 312 ALA ALA TYR ALA ALA LEU ALA LYS LEU CYS LEU ASP GLY SEQRES 19 A 312 LYS TRP ALA GLU ALA ALA ALA LEU GLN LYS ARG ILE ASN SEQRES 20 A 312 HIS LEU PHE HIS ILE VAL PHE VAL GLY ASP THR SER HIS SEQRES 21 A 312 MET SER GLY SER SER ALA GLY LEU GLY GLY PHE LYS THR SEQRES 22 A 312 ALA LEU ALA HIS LEU GLY ILE ILE GLU SER ASN ALA MET SEQRES 23 A 312 ALA VAL PRO HIS GLN SER LEU SER ASP GLU GLU THR ALA SEQRES 24 A 312 ARG ILE HIS ALA ILE VAL ASP GLU PHE LEU TYR THR ALA SEQRES 1 B 312 MET ALA SER ALA THR PHE THR GLY VAL ILE PRO PRO VAL SEQRES 2 B 312 MET THR PRO LEU HIS ALA ASP GLY SER VAL ASP VAL GLU SEQRES 3 B 312 SER LEU ARG LYS LEU VAL ASP HIS LEU ILE ASN GLY GLY SEQRES 4 B 312 VAL ASP GLY LEU PHE ALA LEU GLY SER SER GLY GLU ALA SEQRES 5 B 312 ALA PHE LEU THR ARG ALA GLN ARG LYS LEU ALA LEU THR SEQRES 6 B 312 THR ILE ILE GLU HIS THR ALA GLY ARG VAL PRO VAL THR SEQRES 7 B 312 ALA GLY VAL ILE GLU THR THR THR ALA ARG VAL ILE GLU SEQRES 8 B 312 LEU VAL GLU ASP ALA LEU GLU ALA GLY ALA GLU GLY LEU SEQRES 9 B 312 VAL ALA THR ALA PRO PHE TYR THR ARG THR HIS ASP VAL SEQRES 10 B 312 GLU ILE GLU GLU HIS PHE ARG LYS ILE HIS ALA ALA ALA SEQRES 11 B 312 PRO GLU LEU PRO LEU PHE ALA PHE ASN ILE PRO VAL SER SEQRES 12 B 312 VAL HIS SER ASN LEU ASN PRO VAL MET LEU LEU THR LEU SEQRES 13 B 312 ALA LYS ASP GLY VAL LEU ALA GLY THR LYS ASP SER SER SEQRES 14 B 312 GLY ASN ASP GLY ALA ILE ARG SER LEU ILE GLU ALA ARG SEQRES 15 B 312 ASP ASP ALA GLY LEU THR GLU GLN PHE LYS ILE LEU THR SEQRES 16 B 312 GLY SER GLU THR THR VAL ASP PHE ALA TYR LEU ALA GLY SEQRES 17 B 312 ALA ASP GLY VAL VAL PRO GLY LEU GLY ASN VAL ASP PRO SEQRES 18 B 312 ALA ALA TYR ALA ALA LEU ALA LYS LEU CYS LEU ASP GLY SEQRES 19 B 312 LYS TRP ALA GLU ALA ALA ALA LEU GLN LYS ARG ILE ASN SEQRES 20 B 312 HIS LEU PHE HIS ILE VAL PHE VAL GLY ASP THR SER HIS SEQRES 21 B 312 MET SER GLY SER SER ALA GLY LEU GLY GLY PHE LYS THR SEQRES 22 B 312 ALA LEU ALA HIS LEU GLY ILE ILE GLU SER ASN ALA MET SEQRES 23 B 312 ALA VAL PRO HIS GLN SER LEU SER ASP GLU GLU THR ALA SEQRES 24 B 312 ARG ILE HIS ALA ILE VAL ASP GLU PHE LEU TYR THR ALA HET PYR A 401 5 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET ACT A 408 4 HET ACT A 409 4 HET EDO A 410 4 HET EDO B 401 4 HET PYR B 402 5 HET GOL B 403 6 HET EDO B 404 4 HET EDO B 405 4 HET EDO B 406 4 HET ACT B 407 4 HETNAM PYR PYRUVIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PYR 2(C3 H4 O3) FORMUL 4 EDO 11(C2 H6 O2) FORMUL 10 ACT 3(C2 H3 O2 1-) FORMUL 15 GOL C3 H8 O3 FORMUL 20 HOH *382(H2 O) HELIX 1 AA1 ASP A 24 GLY A 38 1 15 HELIX 2 AA2 GLY A 47 GLU A 51 5 5 HELIX 3 AA3 THR A 56 ALA A 72 1 17 HELIX 4 AA4 THR A 85 GLY A 100 1 16 HELIX 5 AA5 HIS A 115 ALA A 130 1 16 HELIX 6 AA6 ILE A 140 HIS A 145 1 6 HELIX 7 AA7 ASN A 149 ASP A 159 1 11 HELIX 8 AA8 ASN A 171 ALA A 185 1 15 HELIX 9 AA9 THR A 200 ALA A 207 1 8 HELIX 10 AB1 PRO A 214 VAL A 219 5 6 HELIX 11 AB2 ASP A 220 ASP A 233 1 14 HELIX 12 AB3 LYS A 235 PHE A 250 1 16 HELIX 13 AB4 HIS A 251 VAL A 255 5 5 HELIX 14 AB5 SER A 262 LEU A 278 1 17 HELIX 15 AB6 SER A 294 LEU A 309 1 16 HELIX 16 AB7 ASP B 24 GLY B 38 1 15 HELIX 17 AB8 GLY B 47 LEU B 55 5 9 HELIX 18 AB9 THR B 56 ALA B 72 1 17 HELIX 19 AC1 THR B 85 GLY B 100 1 16 HELIX 20 AC2 HIS B 115 ALA B 130 1 16 HELIX 21 AC3 ILE B 140 HIS B 145 1 6 HELIX 22 AC4 ASN B 149 ASP B 159 1 11 HELIX 23 AC5 ASN B 171 ALA B 185 1 15 HELIX 24 AC6 THR B 200 ALA B 207 1 8 HELIX 25 AC7 PRO B 214 VAL B 219 5 6 HELIX 26 AC8 ASP B 220 ASP B 233 1 14 HELIX 27 AC9 LYS B 235 PHE B 250 1 16 HELIX 28 AD1 HIS B 251 VAL B 255 5 5 HELIX 29 AD2 SER B 262 LEU B 278 1 17 HELIX 30 AD3 SER B 294 LEU B 309 1 16 SHEET 1 AA1 8 GLY A 8 VAL A 9 0 SHEET 2 AA1 8 GLY A 211 VAL A 212 1 O VAL A 212 N GLY A 8 SHEET 3 AA1 8 LYS A 192 THR A 195 1 N THR A 195 O GLY A 211 SHEET 4 AA1 8 GLY A 164 ASP A 167 1 N ASP A 167 O LEU A 194 SHEET 5 AA1 8 LEU A 135 ASN A 139 1 N ASN A 139 O LYS A 166 SHEET 6 AA1 8 LEU A 104 ALA A 106 1 N ALA A 106 O PHE A 138 SHEET 7 AA1 8 VAL A 77 GLY A 80 1 N ALA A 79 O VAL A 105 SHEET 8 AA1 8 LEU A 43 ALA A 45 1 N ALA A 45 O GLY A 80 SHEET 1 AA2 8 GLY B 8 VAL B 9 0 SHEET 2 AA2 8 GLY B 211 VAL B 212 1 O VAL B 212 N GLY B 8 SHEET 3 AA2 8 LYS B 192 THR B 195 1 N THR B 195 O GLY B 211 SHEET 4 AA2 8 GLY B 164 ASP B 167 1 N ASP B 167 O LEU B 194 SHEET 5 AA2 8 LEU B 135 ASN B 139 1 N ASN B 139 O LYS B 166 SHEET 6 AA2 8 GLY B 103 ALA B 106 1 N ALA B 106 O PHE B 138 SHEET 7 AA2 8 VAL B 77 GLY B 80 1 N ALA B 79 O GLY B 103 SHEET 8 AA2 8 LEU B 43 ALA B 45 1 N ALA B 45 O THR B 78 LINK NZ BLYS A 166 CA PYR A 401 1555 1555 1.28 LINK NZ BLYS B 166 CA PYR B 402 1555 1555 1.27 CISPEP 1 VAL A 288 PRO A 289 0 8.53 CISPEP 2 VAL B 288 PRO B 289 0 -1.50 SITE 1 AC1 9 PRO A 12 GLY A 47 SER A 48 SER A 49 SITE 2 AC1 9 LYS A 166 SER A 168 VAL A 213 HOH A 559 SITE 3 AC1 9 HOH A 638 SITE 1 AC2 2 EDO A 403 EDO A 405 SITE 1 AC3 2 PRO A 150 EDO A 402 SITE 1 AC4 1 ASP A 41 SITE 1 AC5 1 EDO A 402 SITE 1 AC6 4 LYS A 30 ILE A 280 ILE A 281 GLU A 282 SITE 1 AC7 1 LYS A 125 SITE 1 AC8 2 THR A 199 HOH A 609 SITE 1 AC9 2 LYS A 158 HIS A 277 SITE 1 AD1 5 ARG A 113 HOH A 501 VAL B 253 GLY B 263 SITE 2 AD1 5 GOL B 403 SITE 1 AD2 2 VAL A 253 ARG B 113 SITE 1 AD3 5 ARG A 113 EDO A 410 SER B 49 GLU B 198 SITE 2 AD3 5 PYR B 402 SITE 1 AD4 5 GLY B 8 TYR B 205 ASP B 210 LEU B 232 SITE 2 AD4 5 HOH B 525 SITE 1 AD5 1 LYS B 158 SITE 1 AD6 2 TYR B 205 HOH B 646 SITE 1 AD7 16 PRO B 12 PHE B 44 SER B 48 SER B 49 SITE 2 AD7 16 VAL B 105 PHE B 136 ALA B 137 PHE B 138 SITE 3 AD7 16 ASN B 139 THR B 165 ASP B 167 SER B 168 SITE 4 AD7 16 LEU B 194 VAL B 213 GOL B 403 HOH B 591 CRYST1 55.893 149.959 143.444 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017891 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006971 0.00000