HEADER LYASE 19-JUN-15 5C5D TITLE CRYSTAL STRUCTURE OF TREPONEMA DENTICOLA PURE2-S38D COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: AIR CARBOXYLASE, 5-AMINOIMIDAZOLE RIBONUCLEOTIDE COMPND 5 CARBOXYLASE; COMPND 6 EC: 4.1.1.21; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TREPONEMA DENTICOLA (STRAIN ATCC 35405 / CIP SOURCE 3 103919 / DSM 14222); SOURCE 4 ORGANISM_TAXID: 243275; SOURCE 5 STRAIN: ATCC 35405 / CIP 103919 / DSM 14222; SOURCE 6 GENE: PURE, TDE_0687; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS PURINE BIOSYNTHESIS, CARBOXYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.L.SULLIVAN,T.J.KAPPOCK REVDAT 2 27-SEP-23 5C5D 1 REMARK REVDAT 1 06-JUL-16 5C5D 0 JRNL AUTH K.L.SULLIVAN,I.I.MATHEWS,T.J.KAPPOCK JRNL TITL FUNCTION OF CONSERVED RESIDUES IN THE CLASS II PURE ACTIVE JRNL TITL 2 SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 64843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 3312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5805 - 4.8727 0.97 2721 120 0.1476 0.1764 REMARK 3 2 4.8727 - 3.8683 1.00 2626 150 0.1274 0.1504 REMARK 3 3 3.8683 - 3.3795 1.00 2625 148 0.1379 0.1909 REMARK 3 4 3.3795 - 3.0706 1.00 2607 146 0.1558 0.2016 REMARK 3 5 3.0706 - 2.8506 1.00 2593 137 0.1609 0.1857 REMARK 3 6 2.8506 - 2.6825 1.00 2592 135 0.1636 0.2118 REMARK 3 7 2.6825 - 2.5482 1.00 2602 121 0.1634 0.1706 REMARK 3 8 2.5482 - 2.4373 1.00 2618 132 0.1730 0.2099 REMARK 3 9 2.4373 - 2.3435 1.00 2558 142 0.1605 0.1912 REMARK 3 10 2.3435 - 2.2626 1.00 2586 136 0.1563 0.2189 REMARK 3 11 2.2626 - 2.1918 1.00 2563 136 0.1520 0.1761 REMARK 3 12 2.1918 - 2.1292 1.00 2587 137 0.1607 0.1948 REMARK 3 13 2.1292 - 2.0731 1.00 2577 128 0.1654 0.2026 REMARK 3 14 2.0731 - 2.0226 1.00 2554 151 0.1614 0.1814 REMARK 3 15 2.0226 - 1.9766 1.00 2562 141 0.1579 0.2010 REMARK 3 16 1.9766 - 1.9345 1.00 2554 138 0.1630 0.2146 REMARK 3 17 1.9345 - 1.8958 1.00 2544 142 0.1671 0.2288 REMARK 3 18 1.8958 - 1.8600 1.00 2559 156 0.1678 0.1886 REMARK 3 19 1.8600 - 1.8268 1.00 2530 149 0.1692 0.1952 REMARK 3 20 1.8268 - 1.7959 1.00 2564 148 0.1652 0.2093 REMARK 3 21 1.7959 - 1.7669 1.00 2538 131 0.1841 0.2106 REMARK 3 22 1.7669 - 1.7397 1.00 2587 135 0.1818 0.2352 REMARK 3 23 1.7397 - 1.7141 1.00 2534 138 0.1877 0.2517 REMARK 3 24 1.7141 - 1.6900 0.84 2150 115 0.2002 0.2118 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4930 REMARK 3 ANGLE : 1.290 6649 REMARK 3 CHIRALITY : 0.053 760 REMARK 3 PLANARITY : 0.007 849 REMARK 3 DIHEDRAL : 12.120 1870 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4109 -12.3920 18.4840 REMARK 3 T TENSOR REMARK 3 T11: 0.3717 T22: 0.1112 REMARK 3 T33: 0.6671 T12: -0.1325 REMARK 3 T13: -0.2136 T23: 0.1344 REMARK 3 L TENSOR REMARK 3 L11: 0.3189 L22: 0.4466 REMARK 3 L33: 0.3679 L12: -0.2410 REMARK 3 L13: -0.0274 L23: -0.2697 REMARK 3 S TENSOR REMARK 3 S11: -0.3619 S12: 0.0983 S13: 0.8117 REMARK 3 S21: 0.0683 S22: 0.0263 S23: -0.2385 REMARK 3 S31: -0.4848 S32: 0.2816 S33: 0.0431 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6979 -41.9268 34.3469 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.2114 REMARK 3 T33: 0.1682 T12: -0.0018 REMARK 3 T13: -0.0108 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 1.6310 L22: 1.1514 REMARK 3 L33: 1.1435 L12: 0.2858 REMARK 3 L13: 0.4905 L23: 0.2884 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.1092 S13: 0.0558 REMARK 3 S21: 0.0435 S22: 0.0819 S23: -0.1820 REMARK 3 S31: 0.0559 S32: 0.2394 S33: -0.0639 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1278 -64.4588 13.5956 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.0979 REMARK 3 T33: 0.1328 T12: 0.0165 REMARK 3 T13: -0.0043 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.2732 L22: 0.9951 REMARK 3 L33: 1.0893 L12: -0.2232 REMARK 3 L13: 0.2409 L23: 0.0571 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: 0.0931 S13: -0.0737 REMARK 3 S21: -0.0853 S22: 0.0621 S23: -0.0809 REMARK 3 S31: 0.2185 S32: 0.0609 S33: -0.0890 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7279 -34.7156 -1.9947 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.2264 REMARK 3 T33: 0.1602 T12: 0.0109 REMARK 3 T13: 0.0079 T23: 0.0659 REMARK 3 L TENSOR REMARK 3 L11: 1.0746 L22: 1.4913 REMARK 3 L33: 0.9325 L12: -0.3219 REMARK 3 L13: 0.3164 L23: -0.2371 REMARK 3 S TENSOR REMARK 3 S11: 0.0530 S12: 0.2209 S13: 0.2180 REMARK 3 S21: -0.1642 S22: -0.0579 S23: -0.0623 REMARK 3 S31: 0.0399 S32: 0.0060 S33: 0.0068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64883 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 55.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-16% (W/V) PEG 1000, 0.1 M MAGNESIUM REMARK 280 CHLORIDE, 0.1 M IMIDAZOLE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.56500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.56500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.04200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.47900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.04200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.47900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.56500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.04200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.47900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.56500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.04200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.47900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.56500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 360 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG B 159 REMARK 465 ARG C 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 107 O HOH C 301 1.91 REMARK 500 CG GLU B 19 O HOH B 308 2.03 REMARK 500 NH1 ARG A 159 OE2 GLU D 19 2.12 REMARK 500 O HOH D 407 O HOH D 448 2.17 REMARK 500 O HOH B 306 O HOH C 370 2.18 REMARK 500 O HOH C 420 O HOH C 451 2.18 REMARK 500 O HOH B 412 O HOH B 422 2.18 REMARK 500 OD1 ASP D 14 O HOH D 301 2.18 REMARK 500 O HOH C 377 O HOH C 439 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 325 O HOH D 412 3555 2.00 REMARK 500 O HOH B 409 O HOH D 309 3555 2.04 REMARK 500 O HOH C 327 O HOH C 434 3555 2.04 REMARK 500 O HOH C 346 O HOH C 434 3555 2.06 REMARK 500 O HOH A 343 O HOH A 377 3555 2.09 REMARK 500 O HOH B 421 O HOH C 385 3555 2.11 REMARK 500 O HOH B 354 O HOH D 412 3555 2.11 REMARK 500 O HOH A 308 O HOH A 363 3555 2.11 REMARK 500 O HOH B 420 O HOH C 321 3555 2.11 REMARK 500 O HOH A 320 O HOH A 377 3555 2.11 REMARK 500 SD MET D 1 O HOH B 424 8445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 68 -138.28 51.99 REMARK 500 ARG B 68 -141.73 52.36 REMARK 500 ARG C 68 -140.49 52.03 REMARK 500 ARG D 68 -141.45 53.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RG8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD-TYPE TDPURE2. REMARK 900 RELATED ID: 3RGG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD-TYPE TDPURE2 BOUND TO 5-AMINOIMIDAZOLE REMARK 900 RIBONUCLEOTIDE (AIR). DBREF 5C5D A 1 159 UNP Q73PV9 Q73PV9_TREDE 1 159 DBREF 5C5D B 1 159 UNP Q73PV9 Q73PV9_TREDE 1 159 DBREF 5C5D C 1 159 UNP Q73PV9 Q73PV9_TREDE 1 159 DBREF 5C5D D 1 159 UNP Q73PV9 Q73PV9_TREDE 1 159 SEQADV 5C5D ASP A 38 UNP Q73PV9 SER 38 ENGINEERED MUTATION SEQADV 5C5D ASP B 38 UNP Q73PV9 SER 38 ENGINEERED MUTATION SEQADV 5C5D ASP C 38 UNP Q73PV9 SER 38 ENGINEERED MUTATION SEQADV 5C5D ASP D 38 UNP Q73PV9 SER 38 ENGINEERED MUTATION SEQRES 1 A 159 MET ARG PRO LEU VAL ILE ILE LEU MET GLY SER SER SER SEQRES 2 A 159 ASP MET GLY HIS ALA GLU LYS ILE ALA SER GLU LEU LYS SEQRES 3 A 159 THR PHE GLY ILE GLU TYR ALA ILE ARG ILE GLY ASP ALA SEQRES 4 A 159 HIS LYS THR ALA GLU HIS VAL VAL SER MET LEU LYS GLU SEQRES 5 A 159 TYR GLU ALA LEU ASP ARG PRO LYS LEU TYR ILE THR ILE SEQRES 6 A 159 ALA GLY ARG SER ASN ALA LEU SER GLY PHE VAL ASP GLY SEQRES 7 A 159 PHE VAL LYS GLY ALA THR ILE ALA CYS PRO PRO PRO SER SEQRES 8 A 159 ASP SER PHE ALA GLY ALA ASP ILE TYR SER SER LEU ARG SEQRES 9 A 159 MET PRO SER GLY ILE SER PRO ALA LEU VAL LEU GLU PRO SEQRES 10 A 159 LYS ASN ALA ALA LEU LEU ALA ALA ARG ILE PHE SER LEU SEQRES 11 A 159 TYR ASP LYS GLU ILE ALA ASP SER VAL LYS SER TYR MET SEQRES 12 A 159 GLU SER ASN ALA GLN LYS ILE ILE GLU ASP ASP SER LYS SEQRES 13 A 159 LEU LYS ARG SEQRES 1 B 159 MET ARG PRO LEU VAL ILE ILE LEU MET GLY SER SER SER SEQRES 2 B 159 ASP MET GLY HIS ALA GLU LYS ILE ALA SER GLU LEU LYS SEQRES 3 B 159 THR PHE GLY ILE GLU TYR ALA ILE ARG ILE GLY ASP ALA SEQRES 4 B 159 HIS LYS THR ALA GLU HIS VAL VAL SER MET LEU LYS GLU SEQRES 5 B 159 TYR GLU ALA LEU ASP ARG PRO LYS LEU TYR ILE THR ILE SEQRES 6 B 159 ALA GLY ARG SER ASN ALA LEU SER GLY PHE VAL ASP GLY SEQRES 7 B 159 PHE VAL LYS GLY ALA THR ILE ALA CYS PRO PRO PRO SER SEQRES 8 B 159 ASP SER PHE ALA GLY ALA ASP ILE TYR SER SER LEU ARG SEQRES 9 B 159 MET PRO SER GLY ILE SER PRO ALA LEU VAL LEU GLU PRO SEQRES 10 B 159 LYS ASN ALA ALA LEU LEU ALA ALA ARG ILE PHE SER LEU SEQRES 11 B 159 TYR ASP LYS GLU ILE ALA ASP SER VAL LYS SER TYR MET SEQRES 12 B 159 GLU SER ASN ALA GLN LYS ILE ILE GLU ASP ASP SER LYS SEQRES 13 B 159 LEU LYS ARG SEQRES 1 C 159 MET ARG PRO LEU VAL ILE ILE LEU MET GLY SER SER SER SEQRES 2 C 159 ASP MET GLY HIS ALA GLU LYS ILE ALA SER GLU LEU LYS SEQRES 3 C 159 THR PHE GLY ILE GLU TYR ALA ILE ARG ILE GLY ASP ALA SEQRES 4 C 159 HIS LYS THR ALA GLU HIS VAL VAL SER MET LEU LYS GLU SEQRES 5 C 159 TYR GLU ALA LEU ASP ARG PRO LYS LEU TYR ILE THR ILE SEQRES 6 C 159 ALA GLY ARG SER ASN ALA LEU SER GLY PHE VAL ASP GLY SEQRES 7 C 159 PHE VAL LYS GLY ALA THR ILE ALA CYS PRO PRO PRO SER SEQRES 8 C 159 ASP SER PHE ALA GLY ALA ASP ILE TYR SER SER LEU ARG SEQRES 9 C 159 MET PRO SER GLY ILE SER PRO ALA LEU VAL LEU GLU PRO SEQRES 10 C 159 LYS ASN ALA ALA LEU LEU ALA ALA ARG ILE PHE SER LEU SEQRES 11 C 159 TYR ASP LYS GLU ILE ALA ASP SER VAL LYS SER TYR MET SEQRES 12 C 159 GLU SER ASN ALA GLN LYS ILE ILE GLU ASP ASP SER LYS SEQRES 13 C 159 LEU LYS ARG SEQRES 1 D 159 MET ARG PRO LEU VAL ILE ILE LEU MET GLY SER SER SER SEQRES 2 D 159 ASP MET GLY HIS ALA GLU LYS ILE ALA SER GLU LEU LYS SEQRES 3 D 159 THR PHE GLY ILE GLU TYR ALA ILE ARG ILE GLY ASP ALA SEQRES 4 D 159 HIS LYS THR ALA GLU HIS VAL VAL SER MET LEU LYS GLU SEQRES 5 D 159 TYR GLU ALA LEU ASP ARG PRO LYS LEU TYR ILE THR ILE SEQRES 6 D 159 ALA GLY ARG SER ASN ALA LEU SER GLY PHE VAL ASP GLY SEQRES 7 D 159 PHE VAL LYS GLY ALA THR ILE ALA CYS PRO PRO PRO SER SEQRES 8 D 159 ASP SER PHE ALA GLY ALA ASP ILE TYR SER SER LEU ARG SEQRES 9 D 159 MET PRO SER GLY ILE SER PRO ALA LEU VAL LEU GLU PRO SEQRES 10 D 159 LYS ASN ALA ALA LEU LEU ALA ALA ARG ILE PHE SER LEU SEQRES 11 D 159 TYR ASP LYS GLU ILE ALA ASP SER VAL LYS SER TYR MET SEQRES 12 D 159 GLU SER ASN ALA GLN LYS ILE ILE GLU ASP ASP SER LYS SEQRES 13 D 159 LEU LYS ARG HET EDO A 200 4 HET EDO A 201 4 HET EDO B 200 4 HET EDO C 200 4 HET EDO D 200 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 5(C2 H6 O2) FORMUL 10 HOH *571(H2 O) HELIX 1 AA1 SER A 11 SER A 13 5 3 HELIX 2 AA2 ASP A 14 PHE A 28 1 15 HELIX 3 AA3 THR A 42 ALA A 55 1 14 HELIX 4 AA4 ALA A 71 VAL A 80 1 10 HELIX 5 AA5 ASP A 92 ALA A 97 5 6 HELIX 6 AA6 ASP A 98 ARG A 104 1 7 HELIX 7 AA7 GLU A 116 SER A 129 1 14 HELIX 8 AA8 ASP A 132 LYS A 158 1 27 HELIX 9 AA9 SER B 11 SER B 13 5 3 HELIX 10 AB1 ASP B 14 PHE B 28 1 15 HELIX 11 AB2 THR B 42 ALA B 55 1 14 HELIX 12 AB3 ALA B 71 VAL B 80 1 10 HELIX 13 AB4 ASP B 92 ALA B 97 5 6 HELIX 14 AB5 ASP B 98 ARG B 104 1 7 HELIX 15 AB6 GLU B 116 SER B 129 1 14 HELIX 16 AB7 ASP B 132 LYS B 156 1 25 HELIX 17 AB8 SER C 11 SER C 13 5 3 HELIX 18 AB9 ASP C 14 PHE C 28 1 15 HELIX 19 AC1 THR C 42 ALA C 55 1 14 HELIX 20 AC2 ALA C 71 VAL C 80 1 10 HELIX 21 AC3 ASP C 92 ALA C 97 5 6 HELIX 22 AC4 ASP C 98 ARG C 104 1 7 HELIX 23 AC5 GLU C 116 SER C 129 1 14 HELIX 24 AC6 ASP C 132 LYS C 156 1 25 HELIX 25 AC7 SER D 11 SER D 13 5 3 HELIX 26 AC8 ASP D 14 PHE D 28 1 15 HELIX 27 AC9 THR D 42 ALA D 55 1 14 HELIX 28 AD1 ALA D 71 VAL D 80 1 10 HELIX 29 AD2 ASP D 92 ALA D 97 5 6 HELIX 30 AD3 ASP D 98 ARG D 104 1 7 HELIX 31 AD4 GLU D 116 LEU D 130 1 15 HELIX 32 AD5 ASP D 132 LYS D 158 1 27 SHEET 1 AA1 5 GLU A 31 ILE A 36 0 SHEET 2 AA1 5 LEU A 4 MET A 9 1 N ILE A 7 O ALA A 33 SHEET 3 AA1 5 LYS A 60 ILE A 65 1 O LEU A 61 N ILE A 6 SHEET 4 AA1 5 THR A 84 ALA A 86 1 O ILE A 85 N THR A 64 SHEET 5 AA1 5 ALA A 112 LEU A 113 1 O ALA A 112 N ALA A 86 SHEET 1 AA2 5 GLU B 31 ILE B 36 0 SHEET 2 AA2 5 LEU B 4 MET B 9 1 N ILE B 7 O ALA B 33 SHEET 3 AA2 5 LYS B 60 ILE B 65 1 O LEU B 61 N ILE B 6 SHEET 4 AA2 5 THR B 84 ALA B 86 1 O ILE B 85 N THR B 64 SHEET 5 AA2 5 ALA B 112 LEU B 113 1 O ALA B 112 N THR B 84 SHEET 1 AA3 5 GLU C 31 ILE C 36 0 SHEET 2 AA3 5 LEU C 4 MET C 9 1 N ILE C 7 O ALA C 33 SHEET 3 AA3 5 LYS C 60 ILE C 65 1 O LEU C 61 N ILE C 6 SHEET 4 AA3 5 THR C 84 ALA C 86 1 O ILE C 85 N THR C 64 SHEET 5 AA3 5 ALA C 112 LEU C 113 1 O ALA C 112 N THR C 84 SHEET 1 AA4 5 GLU D 31 ILE D 36 0 SHEET 2 AA4 5 LEU D 4 MET D 9 1 N ILE D 7 O ALA D 33 SHEET 3 AA4 5 LYS D 60 ILE D 65 1 O LEU D 61 N ILE D 6 SHEET 4 AA4 5 THR D 84 ALA D 86 1 O ILE D 85 N THR D 64 SHEET 5 AA4 5 ALA D 112 LEU D 113 1 O ALA D 112 N ALA D 86 SITE 1 AC1 4 PRO A 89 SER A 91 GLY A 96 HOH A 356 SITE 1 AC2 6 ARG A 35 ASP B 154 LEU B 157 LYS B 158 SITE 2 AC2 6 LYS C 133 ASP C 137 SITE 1 AC3 6 PRO B 89 PRO B 90 SER B 91 GLY B 96 SITE 2 AC3 6 ILE B 99 HOH B 369 SITE 1 AC4 5 PRO C 89 PRO C 90 SER C 91 GLY C 96 SITE 2 AC4 5 HOH C 386 SITE 1 AC5 6 PHE C 94 PRO D 89 PRO D 90 SER D 91 SITE 2 AC5 6 GLY D 96 HOH D 362 CRYST1 84.084 154.958 89.130 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011893 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011220 0.00000