HEADER TRANSFERASE 24-JUN-15 5C74 TITLE STRUCTURE OF A NOVEL PROTEIN ARGININE METHYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE SFM1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-204; COMPND 5 SYNONYM: SPOUT FAMILY METHYLTRANSFERASE 1; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: SFM1, YOR021C, OR26.11; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN ARGININE METHYLTRANSFERASE, BINGING SEITES, S- KEYWDS 2 ADENOSYLHOMOCYSTEINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.LV,J.DING REVDAT 3 20-MAR-24 5C74 1 LINK REVDAT 2 25-DEC-19 5C74 1 JRNL REMARK REVDAT 1 13-JAN-16 5C74 0 JRNL AUTH F.LV,T.ZHANG,Z.ZHOU,S.GAO,C.C.WONG,J.Q.ZHOU,J.DING JRNL TITL STRUCTURAL BASIS FOR SFM1 FUNCTIONING AS A PROTEIN ARGININE JRNL TITL 2 METHYLTRANSFERASE. JRNL REF CELL DISCOV V. 1 15037 2015 JRNL REFN ESSN 2056-5968 JRNL PMID 27462434 JRNL DOI 10.1038/CELLDISC.2015.37 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1685 - 4.6814 0.98 2782 129 0.2190 0.2354 REMARK 3 2 4.6814 - 3.7165 1.00 2672 132 0.1767 0.2160 REMARK 3 3 3.7165 - 3.2469 1.00 2609 157 0.1909 0.2263 REMARK 3 4 3.2469 - 2.9501 1.00 2623 137 0.1961 0.2330 REMARK 3 5 2.9501 - 2.7387 1.00 2564 160 0.2002 0.2462 REMARK 3 6 2.7387 - 2.5772 1.00 2592 132 0.1953 0.2445 REMARK 3 7 2.5772 - 2.4482 1.00 2595 139 0.1904 0.2263 REMARK 3 8 2.4482 - 2.3416 1.00 2561 130 0.1979 0.2407 REMARK 3 9 2.3416 - 2.2515 1.00 2570 144 0.1899 0.2312 REMARK 3 10 2.2515 - 2.1738 1.00 2579 140 0.1781 0.2380 REMARK 3 11 2.1738 - 2.1058 1.00 2568 132 0.1791 0.2352 REMARK 3 12 2.1058 - 2.0456 1.00 2573 124 0.1883 0.2465 REMARK 3 13 2.0456 - 1.9918 1.00 2546 133 0.1871 0.2547 REMARK 3 14 1.9918 - 1.9432 1.00 2547 135 0.1789 0.2140 REMARK 3 15 1.9432 - 1.8990 0.99 2516 132 0.1870 0.2272 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3003 REMARK 3 ANGLE : 0.998 4043 REMARK 3 CHIRALITY : 0.042 447 REMARK 3 PLANARITY : 0.005 511 REMARK 3 DIHEDRAL : 14.023 1153 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 27.1769 1.8963 -21.0808 REMARK 3 T TENSOR REMARK 3 T11: 0.1562 T22: 0.1231 REMARK 3 T33: 0.1562 T12: -0.0040 REMARK 3 T13: -0.0127 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.2690 L22: 1.3804 REMARK 3 L33: 0.4720 L12: -0.0484 REMARK 3 L13: 0.0285 L23: -0.3205 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.0055 S13: 0.0399 REMARK 3 S21: 0.0733 S22: 0.0288 S23: 0.2453 REMARK 3 S31: -0.1166 S32: -0.0582 S33: -0.0280 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41006 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 21.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M (NH4)2SO4, 0.1 M BIS-TRIS (PH REMARK 280 5.5), 25% (W/V) PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.76100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.78500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.88050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.78500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.64150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.78500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.88050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.78500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.64150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.76100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 212 REMARK 465 ARG B 79 REMARK 465 VAL B 80 REMARK 465 CYS B 81 REMARK 465 LEU B 82 REMARK 465 LEU B 83 REMARK 465 ASP B 84 REMARK 465 PRO B 85 REMARK 465 ARG B 86 REMARK 465 ALA B 87 REMARK 465 THR B 88 REMARK 465 ILE B 89 REMARK 465 ASP B 90 REMARK 465 LEU B 91 REMARK 465 GLN B 92 REMARK 465 PRO B 93 REMARK 465 GLU B 94 REMARK 465 ASP B 95 REMARK 465 ALA B 96 REMARK 465 THR B 97 REMARK 465 LYS B 98 REMARK 465 PHE B 99 REMARK 465 GLY B 106 REMARK 465 ILE B 107 REMARK 465 LEU B 108 REMARK 465 GLY B 109 REMARK 465 ASP B 110 REMARK 465 HIS B 111 REMARK 465 PRO B 112 REMARK 465 PRO B 113 REMARK 465 ARG B 114 REMARK 465 ASP B 115 REMARK 465 ARG B 116 REMARK 465 THR B 117 REMARK 465 LYS B 118 REMARK 465 GLU B 119 REMARK 465 LEU B 120 REMARK 465 LYS B 121 REMARK 465 THR B 122 REMARK 465 ALA B 123 REMARK 465 TYR B 124 REMARK 465 PRO B 125 REMARK 465 ASN B 126 REMARK 465 LEU B 127 REMARK 465 LEU B 128 REMARK 465 ILE B 129 REMARK 465 SER B 130 REMARK 465 ARG B 131 REMARK 465 ARG B 132 REMARK 465 LEU B 133 REMARK 465 GLY B 134 REMARK 465 ASP B 135 REMARK 465 LYS B 136 REMARK 465 LYS B 152 REMARK 465 ASP B 153 REMARK 465 ARG B 154 REMARK 465 ILE B 155 REMARK 465 ALA B 156 REMARK 465 PHE B 157 REMARK 465 GLU B 158 REMARK 465 ASP B 159 REMARK 465 ILE B 160 REMARK 465 LYS B 161 REMARK 465 PHE B 162 REMARK 465 ASP B 185 REMARK 465 GLU B 187 REMARK 465 GLY B 188 REMARK 465 LYS B 189 REMARK 465 HIS B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NI NI A 303 O HOH A 405 1.69 REMARK 500 OH TYR A 165 O HOH A 401 2.17 REMARK 500 O HOH A 728 O HOH A 732 2.19 REMARK 500 O HOH B 504 O HOH B 510 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 8 51.95 -100.76 REMARK 500 LEU A 133 68.57 -119.71 REMARK 500 PRO B 179 48.43 -77.46 REMARK 500 HIS B 207 115.83 -27.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 730 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 731 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 732 DISTANCE = 6.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 303 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 174 OE1 REMARK 620 2 GLU A 174 OE2 58.8 REMARK 620 3 HIS A 208 NE2 97.6 112.4 REMARK 620 4 HIS A 210 NE2 140.9 128.2 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 304 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 203 OD1 REMARK 620 2 ASP A 203 OD2 55.1 REMARK 620 3 HIS A 211 NE2 145.8 159.0 REMARK 620 4 HOH A 501 O 79.1 73.1 104.7 REMARK 620 5 HIS B 208 NE2 94.2 92.7 87.9 165.7 REMARK 620 6 HIS B 210 NE2 98.0 151.2 48.3 93.3 100.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 207 NE2 REMARK 620 2 HIS A 209 NE2 107.6 REMARK 620 3 HOH A 634 O 96.7 119.8 REMARK 620 4 GLU B 177 OE1 141.8 98.9 93.3 REMARK 620 5 GLU B 177 OE2 101.1 89.5 138.9 51.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 207 NE2 REMARK 620 2 HIS B 209 NE2 118.1 REMARK 620 3 HIS B 211 NE2 127.2 9.2 REMARK 620 4 HOH B 470 O 142.5 27.3 19.7 REMARK 620 5 HOH B 480 O 131.2 26.5 21.0 31.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C77 RELATED DB: PDB DBREF 5C74 A 1 204 UNP Q12314 SFM1_YEAST 1 204 DBREF 5C74 B 1 204 UNP Q12314 SFM1_YEAST 1 204 SEQADV 5C74 LEU A 205 UNP Q12314 EXPRESSION TAG SEQADV 5C74 GLU A 206 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS A 207 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS A 208 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS A 209 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS A 210 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS A 211 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS A 212 UNP Q12314 EXPRESSION TAG SEQADV 5C74 LEU B 205 UNP Q12314 EXPRESSION TAG SEQADV 5C74 GLU B 206 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS B 207 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS B 208 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS B 209 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS B 210 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS B 211 UNP Q12314 EXPRESSION TAG SEQADV 5C74 HIS B 212 UNP Q12314 EXPRESSION TAG SEQRES 1 A 212 MET LYS TYR ILE ILE GLU HIS MET GLU GLU GLY PHE SER SEQRES 2 A 212 GLU TRP VAL ILE LEU GLU TYR SER GLN ILE LEU ARG GLU SEQRES 3 A 212 VAL GLY ALA GLU ASN LEU ILE LEU SER SER LEU PRO GLU SEQRES 4 A 212 SER THR THR GLU LYS ASP ILE PRO GLN ARG LEU LEU LYS SEQRES 5 A 212 LEU GLY LEU ARG TRP THR THR LYS ASP LEU LYS GLY ILE SEQRES 6 A 212 ASN GLU ASP PHE LYS ASP LEU GLU LEU LEU LYS ASP GLY SEQRES 7 A 212 ARG VAL CYS LEU LEU ASP PRO ARG ALA THR ILE ASP LEU SEQRES 8 A 212 GLN PRO GLU ASP ALA THR LYS PHE ASP TYR PHE VAL PHE SEQRES 9 A 212 GLY GLY ILE LEU GLY ASP HIS PRO PRO ARG ASP ARG THR SEQRES 10 A 212 LYS GLU LEU LYS THR ALA TYR PRO ASN LEU LEU ILE SER SEQRES 11 A 212 ARG ARG LEU GLY ASP LYS GLN MET THR THR ASP THR ALA SEQRES 12 A 212 ILE ARG THR THR GLN LEU ILE ILE LYS ASP ARG ILE ALA SEQRES 13 A 212 PHE GLU ASP ILE LYS PHE ILE ASP TYR PRO GLU PHE ARG SEQRES 14 A 212 PHE ASN LYS ASN GLU ALA THR GLU MET PRO PHE ARG TYR SEQRES 15 A 212 VAL LEU ASP LYS GLU GLY LYS PRO ILE LEU PRO GLU GLY SEQRES 16 A 212 MET LEU ASP LEU ILE LYS LYS ASP SER LEU GLU HIS HIS SEQRES 17 A 212 HIS HIS HIS HIS SEQRES 1 B 212 MET LYS TYR ILE ILE GLU HIS MET GLU GLU GLY PHE SER SEQRES 2 B 212 GLU TRP VAL ILE LEU GLU TYR SER GLN ILE LEU ARG GLU SEQRES 3 B 212 VAL GLY ALA GLU ASN LEU ILE LEU SER SER LEU PRO GLU SEQRES 4 B 212 SER THR THR GLU LYS ASP ILE PRO GLN ARG LEU LEU LYS SEQRES 5 B 212 LEU GLY LEU ARG TRP THR THR LYS ASP LEU LYS GLY ILE SEQRES 6 B 212 ASN GLU ASP PHE LYS ASP LEU GLU LEU LEU LYS ASP GLY SEQRES 7 B 212 ARG VAL CYS LEU LEU ASP PRO ARG ALA THR ILE ASP LEU SEQRES 8 B 212 GLN PRO GLU ASP ALA THR LYS PHE ASP TYR PHE VAL PHE SEQRES 9 B 212 GLY GLY ILE LEU GLY ASP HIS PRO PRO ARG ASP ARG THR SEQRES 10 B 212 LYS GLU LEU LYS THR ALA TYR PRO ASN LEU LEU ILE SER SEQRES 11 B 212 ARG ARG LEU GLY ASP LYS GLN MET THR THR ASP THR ALA SEQRES 12 B 212 ILE ARG THR THR GLN LEU ILE ILE LYS ASP ARG ILE ALA SEQRES 13 B 212 PHE GLU ASP ILE LYS PHE ILE ASP TYR PRO GLU PHE ARG SEQRES 14 B 212 PHE ASN LYS ASN GLU ALA THR GLU MET PRO PHE ARG TYR SEQRES 15 B 212 VAL LEU ASP LYS GLU GLY LYS PRO ILE LEU PRO GLU GLY SEQRES 16 B 212 MET LEU ASP LEU ILE LYS LYS ASP SER LEU GLU HIS HIS SEQRES 17 B 212 HIS HIS HIS HIS HET SO4 A 301 5 HET NI A 302 1 HET NI A 303 1 HET NI A 304 1 HET SO4 B 301 5 HET NI B 302 1 HETNAM SO4 SULFATE ION HETNAM NI NICKEL (II) ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 NI 4(NI 2+) FORMUL 9 HOH *443(H2 O) HELIX 1 AA1 SER A 13 GLY A 28 1 16 HELIX 2 AA2 THR A 42 ILE A 46 5 5 HELIX 3 AA3 PRO A 47 LEU A 53 1 7 HELIX 4 AA4 ASP A 61 LYS A 63 5 3 HELIX 5 AA5 GLY A 64 PHE A 69 1 6 HELIX 6 AA6 GLN A 92 LYS A 98 5 7 HELIX 7 AA7 ASP A 115 TYR A 124 1 10 HELIX 8 AA8 THR A 139 LYS A 152 1 14 HELIX 9 AA9 ALA A 156 ILE A 160 5 5 HELIX 10 AB1 GLY A 195 GLU A 206 1 12 HELIX 11 AB2 SER B 13 GLY B 28 1 16 HELIX 12 AB3 PRO B 47 LEU B 53 1 7 HELIX 13 AB4 ASP B 61 LYS B 63 5 3 HELIX 14 AB5 GLY B 64 PHE B 69 1 6 HELIX 15 AB6 THR B 139 ILE B 151 1 13 HELIX 16 AB7 GLY B 195 ASP B 203 1 9 SHEET 1 AA1 6 ARG A 56 TRP A 57 0 SHEET 2 AA1 6 LEU A 32 SER A 35 1 N LEU A 34 O ARG A 56 SHEET 3 AA1 6 LYS A 2 GLU A 6 1 N ILE A 5 O ILE A 33 SHEET 4 AA1 6 TYR A 101 PHE A 104 1 O PHE A 104 N ILE A 4 SHEET 5 AA1 6 VAL A 80 LEU A 83 1 N CYS A 81 O VAL A 103 SHEET 6 AA1 6 LEU A 128 ARG A 131 1 O ILE A 129 N LEU A 82 SHEET 1 AA2 2 PHE A 162 ASP A 164 0 SHEET 2 AA2 2 ARG A 181 VAL A 183 -1 O TYR A 182 N ILE A 163 SHEET 1 AA3 3 GLU A 167 ASN A 171 0 SHEET 2 AA3 3 GLU A 174 GLU A 177 -1 O THR A 176 N PHE A 168 SHEET 3 AA3 3 HIS B 209 HIS B 211 -1 O HIS B 211 N ALA A 175 SHEET 1 AA4 4 ARG B 56 TRP B 57 0 SHEET 2 AA4 4 LEU B 32 SER B 35 1 N LEU B 34 O ARG B 56 SHEET 3 AA4 4 LYS B 2 GLU B 6 1 N ILE B 5 O ILE B 33 SHEET 4 AA4 4 TYR B 101 PHE B 104 1 O PHE B 102 N ILE B 4 SHEET 1 AA5 2 GLU B 167 ARG B 169 0 SHEET 2 AA5 2 ALA B 175 GLU B 177 -1 O THR B 176 N PHE B 168 LINK OE1 GLU A 174 NI NI A 303 1555 1555 1.86 LINK OE2 GLU A 174 NI NI A 303 1555 1555 2.49 LINK OD1 ASP A 203 NI NI A 304 1555 1555 2.15 LINK OD2 ASP A 203 NI NI A 304 1555 1555 2.55 LINK NE2 HIS A 207 NI NI A 302 1555 1555 2.18 LINK NE2 HIS A 208 NI NI A 303 1555 1555 2.11 LINK NE2 HIS A 209 NI NI A 302 1555 1555 2.07 LINK NE2 HIS A 210 NI NI A 303 1555 1555 2.00 LINK NE2 HIS A 211 NI NI A 304 1555 8554 1.97 LINK NI NI A 302 O HOH A 634 1555 1555 2.28 LINK NI NI A 302 OE1 GLU B 177 1555 1555 2.79 LINK NI NI A 302 OE2 GLU B 177 1555 1555 1.82 LINK NI NI A 304 O HOH A 501 1555 1555 2.54 LINK NI NI A 304 NE2 HIS B 208 1555 1555 2.10 LINK NI NI A 304 NE2 HIS B 210 1555 1555 1.96 LINK NE2 HIS B 207 NI NI B 302 1555 8554 2.02 LINK NE2 HIS B 209 NI NI B 302 1555 8554 1.96 LINK NE2 HIS B 211 NI NI B 302 1555 1555 2.09 LINK NI NI B 302 O HOH B 470 1555 1555 2.05 LINK NI NI B 302 O HOH B 480 1555 8554 2.45 CISPEP 1 HIS A 111 PRO A 112 0 -0.20 SITE 1 AC1 6 PRO A 47 GLN A 48 ARG A 49 HOH A 433 SITE 2 AC1 6 HOH A 454 HOH B 439 SITE 1 AC2 4 HIS A 207 HIS A 209 HOH A 634 GLU B 177 SITE 1 AC3 5 GLU A 174 HIS A 208 HIS A 210 HOH A 405 SITE 2 AC3 5 HOH A 427 SITE 1 AC4 5 ASP A 203 HIS A 211 HOH A 501 HIS B 208 SITE 2 AC4 5 HIS B 210 SITE 1 AC5 5 PRO B 47 GLN B 48 ARG B 49 HOH B 401 SITE 2 AC5 5 HOH B 406 SITE 1 AC6 5 HIS B 207 HIS B 209 HIS B 211 HOH B 470 SITE 2 AC6 5 HOH B 480 CRYST1 107.570 107.570 87.522 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009296 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011426 0.00000