HEADER HYDROLASE 24-JUN-15 5C7Q TITLE CRYSTAL STRUCTURE OF THE BDELLOVIBRIO BACTERIOVORUS NUCLEOSIDE TITLE 2 DIPHOSPHATE SUGAR HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUDF PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.1.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BDELLOVIBRIO BACTERIOVORUS; SOURCE 3 ORGANISM_TAXID: 264462; SOURCE 4 STRAIN: ATCC 15356 / DSM 50701 / NCIB 9529 / HD100; SOURCE 5 GENE: NUDF, BD3179; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS NUDIX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.B.GABELLI,A.H.DE LA PENA,A.SUAREZ,L.M.AMZEL REVDAT 2 06-MAR-24 5C7Q 1 REMARK REVDAT 1 20-JAN-16 5C7Q 0 JRNL AUTH A.H.DE LA PENA,A.SUAREZ,K.C.DUONG-LY,A.J.SCHOEFFIELD, JRNL AUTH 2 M.A.PIZARRO-DUPUY,M.ZARR,S.A.PINEIRO,L.M.AMZEL,S.B.GABELLI JRNL TITL STRUCTURAL AND ENZYMATIC CHARACTERIZATION OF A NUCLEOSIDE JRNL TITL 2 DIPHOSPHATE SUGAR HYDROLASE FROM BDELLOVIBRIO BACTERIOVORUS. JRNL REF PLOS ONE V. 10 41716 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26524597 JRNL DOI 10.1371/JOURNAL.PONE.0141716 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 55770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3034 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2983 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.742 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3200 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3111 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4298 ; 1.641 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7166 ; 0.780 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 6.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;32.339 ;24.204 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 569 ;11.993 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.683 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3450 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 718 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1460 ; 1.597 ; 1.926 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1459 ; 1.585 ; 1.924 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1826 ; 2.387 ; 2.879 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5C7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .948 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58801 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.75-2.0 M AMMONIUM SULFATE, 0.1 M REMARK 280 HEPES PH 7.0, AND 0-0.5% PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.71250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.54900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.71250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.54900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 462 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 48 CG - SD - CE ANGL. DEV. = 11.2 DEGREES REMARK 500 THR B 85 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 81 68.43 29.33 REMARK 500 VAL A 113 52.53 -142.00 REMARK 500 TYR A 116 22.52 -156.43 REMARK 500 ASP A 128 68.88 60.58 REMARK 500 LEU A 132 -104.71 -127.95 REMARK 500 LEU B 107 -60.85 -100.02 REMARK 500 VAL B 113 57.40 -143.14 REMARK 500 TYR B 116 21.50 -158.97 REMARK 500 ASP B 128 69.27 63.42 REMARK 500 LEU B 132 -131.92 -96.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 463 DISTANCE = 6.56 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C7T RELATED DB: PDB REMARK 900 5C7T CONTAINS THE SAME PROTEIN WITH ADPR DBREF 5C7Q A 1 182 UNP Q6MIH8 Q6MIH8_BDEBA 1 182 DBREF 5C7Q B 1 182 UNP Q6MIH8 Q6MIH8_BDEBA 1 182 SEQRES 1 A 182 MET LYS HIS LEU GLU GLU LYS THR LEU SER THR ARG GLN SEQRES 2 A 182 ILE PHE LYS GLY ARG TYR LEU LYS ILE GLU GLN ASP GLN SEQRES 3 A 182 VAL GLN ALA PRO ASP GLY ARG THR TYR THR ARG GLU TYR SEQRES 4 A 182 ILE LEU HIS PRO GLY ALA ALA MET MET ILE PRO LEU LEU SEQRES 5 A 182 PRO ASN GLY ASN VAL VAL MET ILE HIS GLN TYR ARG HIS SEQRES 6 A 182 ALA VAL LYS LYS VAL PHE LEU GLU PHE PRO ALA GLY LYS SEQRES 7 A 182 ARG ASP HIS ASN GLU GLU THR LEU LEU THR ALA LYS ARG SEQRES 8 A 182 GLU LEU LEU GLU GLU THR GLY TYR GLU ALA LYS ASP TRP SEQRES 9 A 182 LYS PHE LEU THR THR ILE HIS PRO VAL ILE GLY TYR SER SEQRES 10 A 182 ASN GLU HIS ILE ASP LEU TYR LEU ALA ARG ASP LEU THR SEQRES 11 A 182 HIS LEU GLU GLN ARG LEU ASP GLN GLY GLU PHE ILE GLU SEQRES 12 A 182 VAL VAL GLU VAL LYS PRO ALA ASP LEU MET GLN LEU VAL SEQRES 13 A 182 LEU GLU GLY LYS VAL SER ASP VAL LYS THR GLN ILE GLY SEQRES 14 A 182 ALA PHE TRP LEU ASP LYS PHE LEU ARG GLY GLU TRP ASN SEQRES 1 B 182 MET LYS HIS LEU GLU GLU LYS THR LEU SER THR ARG GLN SEQRES 2 B 182 ILE PHE LYS GLY ARG TYR LEU LYS ILE GLU GLN ASP GLN SEQRES 3 B 182 VAL GLN ALA PRO ASP GLY ARG THR TYR THR ARG GLU TYR SEQRES 4 B 182 ILE LEU HIS PRO GLY ALA ALA MET MET ILE PRO LEU LEU SEQRES 5 B 182 PRO ASN GLY ASN VAL VAL MET ILE HIS GLN TYR ARG HIS SEQRES 6 B 182 ALA VAL LYS LYS VAL PHE LEU GLU PHE PRO ALA GLY LYS SEQRES 7 B 182 ARG ASP HIS ASN GLU GLU THR LEU LEU THR ALA LYS ARG SEQRES 8 B 182 GLU LEU LEU GLU GLU THR GLY TYR GLU ALA LYS ASP TRP SEQRES 9 B 182 LYS PHE LEU THR THR ILE HIS PRO VAL ILE GLY TYR SER SEQRES 10 B 182 ASN GLU HIS ILE ASP LEU TYR LEU ALA ARG ASP LEU THR SEQRES 11 B 182 HIS LEU GLU GLN ARG LEU ASP GLN GLY GLU PHE ILE GLU SEQRES 12 B 182 VAL VAL GLU VAL LYS PRO ALA ASP LEU MET GLN LEU VAL SEQRES 13 B 182 LEU GLU GLY LYS VAL SER ASP VAL LYS THR GLN ILE GLY SEQRES 14 B 182 ALA PHE TRP LEU ASP LYS PHE LEU ARG GLY GLU TRP ASN HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET GOL A 204 6 HET GOL A 205 6 HET GOL A 206 6 HET GOL A 207 6 HET PEG A 208 7 HET PEG A 209 7 HET PG0 A 210 8 HET PGE A 211 10 HET SO4 A 212 5 HET SO4 A 213 5 HET SO4 B 201 5 HET GOL B 202 6 HET GOL B 203 6 HET GOL B 204 6 HET GOL B 205 6 HET GOL B 206 6 HET PG0 B 207 8 HET PGE B 208 10 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PG0 PEG 6000 FORMUL 3 SO4 6(O4 S 2-) FORMUL 6 GOL 9(C3 H8 O3) FORMUL 10 PEG 2(C4 H10 O3) FORMUL 12 PG0 2(C5 H12 O3) FORMUL 13 PGE 2(C6 H14 O4) FORMUL 24 HOH *349(H2 O) HELIX 1 AA1 MET A 1 GLU A 5 5 5 HELIX 2 AA2 GLU A 84 GLY A 98 1 15 HELIX 3 AA3 LYS A 148 GLU A 158 1 11 HELIX 4 AA4 ASP A 163 ARG A 178 1 16 HELIX 5 AA5 GLU B 84 GLY B 98 1 15 HELIX 6 AA6 LYS B 148 GLU B 158 1 11 HELIX 7 AA7 ASP B 163 ARG B 178 1 16 SHEET 1 AA1 3 LYS A 7 LYS A 16 0 SHEET 2 AA1 3 LYS A 21 GLN A 28 -1 O ILE A 22 N PHE A 15 SHEET 3 AA1 3 THR A 34 ILE A 40 -1 O ARG A 37 N ASP A 25 SHEET 1 AA2 4 ALA A 76 LYS A 78 0 SHEET 2 AA2 4 ALA A 45 PRO A 50 -1 N ALA A 46 O GLY A 77 SHEET 3 AA2 4 ILE A 121 HIS A 131 1 O ALA A 126 N ILE A 49 SHEET 4 AA2 4 TYR A 99 ILE A 110 -1 N LEU A 107 O LEU A 123 SHEET 1 AA3 3 LYS A 69 GLU A 73 0 SHEET 2 AA3 3 VAL A 57 ARG A 64 -1 N ILE A 60 O GLU A 73 SHEET 3 AA3 3 GLU A 143 VAL A 147 -1 O VAL A 145 N MET A 59 SHEET 1 AA4 3 LYS B 7 LYS B 16 0 SHEET 2 AA4 3 LYS B 21 GLN B 28 -1 O GLN B 26 N LEU B 9 SHEET 3 AA4 3 THR B 34 ILE B 40 -1 O TYR B 39 N GLU B 23 SHEET 1 AA5 4 ALA B 76 LYS B 78 0 SHEET 2 AA5 4 ALA B 45 LEU B 51 -1 N ALA B 46 O GLY B 77 SHEET 3 AA5 4 ILE B 121 HIS B 131 1 O TYR B 124 N ILE B 49 SHEET 4 AA5 4 TYR B 99 ILE B 110 -1 N ASP B 103 O ARG B 127 SHEET 1 AA6 3 VAL B 70 GLU B 73 0 SHEET 2 AA6 3 VAL B 57 TYR B 63 -1 N GLN B 62 O PHE B 71 SHEET 3 AA6 3 GLU B 143 VAL B 147 -1 O VAL B 145 N MET B 59 SITE 1 AC1 6 ARG A 64 LYS A 78 GOL A 207 HOH A 310 SITE 2 AC1 6 HOH A 344 HOH A 383 SITE 1 AC2 6 TYR A 35 THR A 36 GLY A 179 ARG B 18 SITE 2 AC2 6 GLN B 138 HOH B 302 SITE 1 AC3 7 ARG A 64 HOH A 303 HOH A 367 HOH A 402 SITE 2 AC3 7 ARG B 37 HOH B 356 HOH B 364 SITE 1 AC4 7 LEU A 51 ARG A 127 ASP A 128 HOH A 305 SITE 2 AC4 7 HOH A 316 HOH A 366 HOH A 401 SITE 1 AC5 8 TYR A 19 LEU A 20 LEU A 41 PRO A 43 SITE 2 AC5 8 LYS A 78 HOH A 315 HOH A 323 HOH A 345 SITE 1 AC6 9 LYS A 69 VAL A 70 PHE A 71 GLY A 159 SITE 2 AC6 9 LYS A 160 VAL A 161 SER A 162 HOH A 318 SITE 3 AC6 9 HIS B 111 SITE 1 AC7 8 HIS A 42 ALA A 45 GLU A 119 LYS A 165 SITE 2 AC7 8 SO4 A 201 HOH A 351 HOH A 377 TYR B 116 SITE 1 AC8 6 LYS A 105 PHE A 106 LEU A 107 TRP A 172 SITE 2 AC8 6 TRP A 181 HOH A 394 SITE 1 AC9 8 GLN A 24 GLN A 26 THR A 36 PHE A 176 SITE 2 AC9 8 ASN A 182 HOH A 308 HOH A 311 ARG B 18 SITE 1 AD1 3 HIS A 61 VAL A 70 HOH A 376 SITE 1 AD2 5 PRO A 30 GLY A 32 GLU B 5 GLN B 28 SITE 2 AD2 5 ALA B 29 SITE 1 AD3 11 ARG A 37 GLY A 115 HOH A 312 HOH A 339 SITE 2 AD3 11 HOH A 341 HOH A 343 HOH A 356 HOH A 420 SITE 3 AD3 11 ARG B 64 HOH B 346 HOH B 358 SITE 1 AD4 8 ARG A 18 TYR A 19 HOH A 333 TYR B 35 SITE 2 AD4 8 THR B 36 HOH B 306 HOH B 392 HOH B 394 SITE 1 AD5 10 ARG B 64 GLY B 77 LYS B 78 GOL B 203 SITE 2 AD5 10 HOH B 318 HOH B 322 HOH B 327 HOH B 330 SITE 3 AD5 10 HOH B 346 HOH B 354 SITE 1 AD6 12 HIS A 111 LYS B 69 VAL B 70 PHE B 71 SITE 2 AD6 12 GLY B 159 LYS B 160 VAL B 161 SER B 162 SITE 3 AD6 12 PG0 B 207 HOH B 334 HOH B 409 HOH B 421 SITE 1 AD7 8 TYR A 116 HIS B 42 GLU B 119 LYS B 165 SITE 2 AD7 8 SO4 B 201 HOH B 327 HOH B 357 HOH B 388 SITE 1 AD8 4 ARG A 18 HIS B 131 HOH B 368 HOH B 411 SITE 1 AD9 3 HIS B 3 LEU B 4 GLU B 5 SITE 1 AE1 10 TYR A 116 HOH A 365 TYR B 19 LEU B 20 SITE 2 AE1 10 HIS B 42 PRO B 43 LYS B 78 HOH B 335 SITE 3 AE1 10 HOH B 336 HOH B 382 SITE 1 AE2 4 HIS B 61 VAL B 70 VAL B 145 GOL B 202 SITE 1 AE3 4 LYS B 105 LEU B 107 PHE B 176 ASN B 182 CRYST1 75.425 103.098 51.712 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019338 0.00000