HEADER TRANSFERASE 24-JUN-15 5C7S TITLE PRPP COMPLEXED WITH TWO MN2+ IN THE ACTIVE SITE OF MYCOBACTERIUM TITLE 2 TUBERCULOSIS ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE (ANPRT; TRPD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: TRPD, RV2192C, MTCY190.03C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE, PHOSPHORIBOSYL PYROPHOSPHATE, KEYWDS 2 MAGNESIUM BINDING, TBSGC, TB STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.L.EVANS,E.N.BAKER,J.S.LOTT,TB STRUCTURAL GENOMICS CONSORTIUM AUTHOR 2 (TBSGC) REVDAT 7 27-SEP-23 5C7S 1 HETSYN REVDAT 6 29-JUL-20 5C7S 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 01-JAN-20 5C7S 1 REMARK REVDAT 4 17-JUL-19 5C7S 1 REMARK REVDAT 3 22-NOV-17 5C7S 1 REMARK REVDAT 2 13-SEP-17 5C7S 1 REMARK REVDAT 1 29-JUN-16 5C7S 0 JRNL AUTH G.L.EVANS,E.N.BAKER,J.S.LOTT JRNL TITL BINDING AND MIMICKING OF THE PHOSPHATE-RICH SUBSTRATE, PRPP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 37441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.5576 - 4.7969 0.95 3148 128 0.1471 0.1574 REMARK 3 2 4.7969 - 3.8120 0.92 2949 152 0.1587 0.2068 REMARK 3 3 3.8120 - 3.3315 0.87 2798 129 0.1877 0.2405 REMARK 3 4 3.3315 - 3.0275 0.99 3151 147 0.2080 0.2785 REMARK 3 5 3.0275 - 2.8108 0.99 3202 148 0.2212 0.2584 REMARK 3 6 2.8108 - 2.6453 1.00 3155 170 0.2199 0.2507 REMARK 3 7 2.6453 - 2.5130 1.00 3189 154 0.2068 0.2725 REMARK 3 8 2.5130 - 2.4037 1.00 3205 138 0.2258 0.2921 REMARK 3 9 2.4037 - 2.3112 1.00 3170 173 0.2328 0.2922 REMARK 3 10 2.3112 - 2.2315 0.60 1892 110 0.3484 0.3696 REMARK 3 11 2.2315 - 2.1618 0.84 2700 132 0.3210 0.4369 REMARK 3 12 2.1618 - 2.1000 1.00 3140 161 0.2519 0.3234 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5167 REMARK 3 ANGLE : 0.712 7072 REMARK 3 CHIRALITY : 0.027 819 REMARK 3 PLANARITY : 0.003 940 REMARK 3 DIHEDRAL : 10.574 1792 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C7S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS NOVEMBER 3, 2014, AIMLESS REMARK 200 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: PDB ENTRY 3QR9 CHAIN A REMARK 200 REMARK 200 REMARK: FLAT DIAMOND-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M IMIDAZOLE-MALATE, 9% PEG4000, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.08900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.24050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.08900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.24050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 LYS A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 ARG A 333 REMARK 465 ALA A 334 REMARK 465 ILE A 370 REMARK 465 LEU A 371 REMARK 465 GLU A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 LYS B 18 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 SER B 331 REMARK 465 SER B 332 REMARK 465 ARG B 333 REMARK 465 ALA B 334 REMARK 465 ILE B 370 REMARK 465 LEU B 371 REMARK 465 GLU B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 24 CG1 CG2 REMARK 470 ARG A 365 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 369 CG CD OE1 NE2 REMARK 470 VAL B 24 CG1 CG2 REMARK 470 GLN B 369 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 73 100.22 84.79 REMARK 500 ASP A 251 46.48 -84.82 REMARK 500 THR A 257 -163.29 -174.94 REMARK 500 ALA B 73 100.70 94.66 REMARK 500 ASP B 251 47.32 -86.00 REMARK 500 THR B 257 -167.20 -168.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 119 OG REMARK 620 2 GLU A 252 OE2 93.0 REMARK 620 3 PRP A 403 O2A 85.2 164.3 REMARK 620 4 PRP A 403 O2B 88.9 72.3 92.0 REMARK 620 5 HOH A 507 O 167.5 99.5 82.8 95.1 REMARK 620 6 HOH A 530 O 73.0 89.4 105.0 153.7 106.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 GLU A 252 OE2 101.7 REMARK 620 3 HOH A 507 O 85.3 91.4 REMARK 620 4 HOH A 520 O 156.3 58.5 106.7 REMARK 620 5 HOH A 529 O 89.2 99.3 168.7 82.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 119 OG REMARK 620 2 GLU B 252 OE2 92.7 REMARK 620 3 PRP B 403 O3B 88.6 72.3 REMARK 620 4 PRP B 403 O2A 87.4 171.8 99.5 REMARK 620 5 HOH B 502 O 164.9 97.4 105.1 84.2 REMARK 620 6 HOH B 537 O 72.0 86.7 150.9 101.1 97.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 251 OD1 REMARK 620 2 GLU B 252 OE2 97.9 REMARK 620 3 HOH B 502 O 84.5 89.8 REMARK 620 4 HOH B 509 O 87.8 118.8 151.2 REMARK 620 5 HOH B 546 O 147.1 62.4 119.1 80.8 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QR9 RELATED DB: PDB REMARK 900 UNLIGANDED ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE IN SAME REMARK 900 CRYSTALLIZATION CONDITIONS, BUT DIFFERENT SPACE GROUP AND UNIT CELL REMARK 900 RELATED ID: 1ZVW RELATED DB: PDB REMARK 900 ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE WITH PRPP AND TWO MG2+ BOUND REMARK 900 AT THE ACTIVE SITE, BUT DIFFERENT CRYSTALLIZATION CONDITIONS, SPACE REMARK 900 GROUP AND UNIT CELL REMARK 900 RELATED ID: 2BYT RELATED DB: PDB REMARK 900 ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE WITH PRPP AND ONE MG2+ BOUND REMARK 900 AT THE ACTIVE SITE IN SAME CRYSTALLIZATION CONDITIONS, BUT REMARK 900 DIFFERENT SPACE GROUP AND UNIT CELL REMARK 900 RELATED ID: 5C1R RELATED DB: PDB REMARK 900 ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE WITH STEREOISOMER OF PRPP REMARK 900 AND TWO MG2+ BOUND IN THE ACTIVE SITE IN SAME CRYSTALLIZATION REMARK 900 CONDITIONS, SPACE GROUP AND UNIT CELL REMARK 900 RELATED ID: 5C2L RELATED DB: PDB REMARK 900 MG2+ SOAKED INTO ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE IN SAME REMARK 900 CRYSTALLIZATION CONDITIONS, BUT DIFFERENT SPACE GROUP AND UNIT CELL DBREF 5C7S A 2 370 UNP P9WFX5 TRPD_MYCTU 2 370 DBREF 5C7S B 2 370 UNP P9WFX5 TRPD_MYCTU 2 370 SEQADV 5C7S MET A 0 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S VAL A 1 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S LEU A 371 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S GLU A 372 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS A 373 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS A 374 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS A 375 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS A 376 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS A 377 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS A 378 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S MET B 0 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S VAL B 1 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S LEU B 371 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S GLU B 372 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS B 373 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS B 374 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS B 375 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS B 376 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS B 377 UNP P9WFX5 EXPRESSION TAG SEQADV 5C7S HIS B 378 UNP P9WFX5 EXPRESSION TAG SEQRES 1 A 379 MET VAL ALA LEU SER ALA GLU GLY SER SER GLY GLY SER SEQRES 2 A 379 ARG GLY GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SEQRES 3 A 379 SER TRP PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG SEQRES 4 A 379 ASP LEU ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN SEQRES 5 A 379 ILE MET THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA SEQRES 6 A 379 PHE ALA VAL ALA MET THR MET LYS ALA PRO THR ALA ASP SEQRES 7 A 379 GLU VAL GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA SEQRES 8 A 379 HIS PRO LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL SEQRES 9 A 379 ASP VAL VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL SEQRES 10 A 379 ASN LEU SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA SEQRES 11 A 379 GLY VAL PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SEQRES 12 A 379 SER LEU SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY SEQRES 13 A 379 VAL ARG ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER SEQRES 14 A 379 LEU ALA GLU VAL GLY ILE GLY PHE CYS PHE ALA PRO ARG SEQRES 15 A 379 PHE HIS PRO SER TYR ARG HIS ALA ALA ALA VAL ARG ARG SEQRES 16 A 379 GLU ILE GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO SEQRES 17 A 379 LEU THR ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY SEQRES 18 A 379 CYS ALA PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL SEQRES 19 A 379 PHE ALA ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY SEQRES 20 A 379 ASP ASP GLY LEU ASP GLU LEU THR THR THR THR THR SER SEQRES 21 A 379 THR ILE TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU SEQRES 22 A 379 THR PHE ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN SEQRES 23 A 379 LEU ASP GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA SEQRES 24 A 379 ALA ALA VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO SEQRES 25 A 379 VAL ARG ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE SEQRES 26 A 379 VAL ALA HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU SEQRES 27 A 379 PRO ALA TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA SEQRES 28 A 379 ILE ASP THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP SEQRES 29 A 379 VAL ARG PHE GLY ARG GLN ILE LEU GLU HIS HIS HIS HIS SEQRES 30 A 379 HIS HIS SEQRES 1 B 379 MET VAL ALA LEU SER ALA GLU GLY SER SER GLY GLY SER SEQRES 2 B 379 ARG GLY GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SEQRES 3 B 379 SER TRP PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG SEQRES 4 B 379 ASP LEU ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN SEQRES 5 B 379 ILE MET THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA SEQRES 6 B 379 PHE ALA VAL ALA MET THR MET LYS ALA PRO THR ALA ASP SEQRES 7 B 379 GLU VAL GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA SEQRES 8 B 379 HIS PRO LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL SEQRES 9 B 379 ASP VAL VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL SEQRES 10 B 379 ASN LEU SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA SEQRES 11 B 379 GLY VAL PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SEQRES 12 B 379 SER LEU SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY SEQRES 13 B 379 VAL ARG ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER SEQRES 14 B 379 LEU ALA GLU VAL GLY ILE GLY PHE CYS PHE ALA PRO ARG SEQRES 15 B 379 PHE HIS PRO SER TYR ARG HIS ALA ALA ALA VAL ARG ARG SEQRES 16 B 379 GLU ILE GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO SEQRES 17 B 379 LEU THR ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY SEQRES 18 B 379 CYS ALA PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL SEQRES 19 B 379 PHE ALA ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY SEQRES 20 B 379 ASP ASP GLY LEU ASP GLU LEU THR THR THR THR THR SER SEQRES 21 B 379 THR ILE TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU SEQRES 22 B 379 THR PHE ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN SEQRES 23 B 379 LEU ASP GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA SEQRES 24 B 379 ALA ALA VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO SEQRES 25 B 379 VAL ARG ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE SEQRES 26 B 379 VAL ALA HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU SEQRES 27 B 379 PRO ALA TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA SEQRES 28 B 379 ILE ASP THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP SEQRES 29 B 379 VAL ARG PHE GLY ARG GLN ILE LEU GLU HIS HIS HIS HIS SEQRES 30 B 379 HIS HIS HET MN A 401 1 HET MN A 402 1 HET PRP A 403 22 HET MN B 401 1 HET MN B 402 1 HET PRP B 403 22 HETNAM MN MANGANESE (II) ION HETNAM PRP 1-O-PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETSYN PRP ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O- HETSYN 2 PRP PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 3 PRP PYROPHOSPHONO-5-O-PHOSPHONO-D-RIBOSE; 1-O- HETSYN 4 PRP PYROPHOSPHONO-5-O-PHOSPHONO-RIBOSE FORMUL 3 MN 4(MN 2+) FORMUL 5 PRP 2(C5 H13 O14 P3) FORMUL 9 HOH *287(H2 O) HELIX 1 AA1 SER A 26 ASP A 36 1 11 HELIX 2 AA2 GLY A 43 THR A 54 1 12 HELIX 3 AA3 ARG A 58 ALA A 73 1 16 HELIX 4 AA4 THR A 75 ALA A 90 1 16 HELIX 5 AA5 ASN A 117 ALA A 129 1 13 HELIX 6 AA6 GLY A 146 LEU A 154 1 9 HELIX 7 AA7 GLY A 161 GLY A 173 1 13 HELIX 8 AA8 ALA A 179 HIS A 183 1 5 HELIX 9 AA9 TYR A 186 GLY A 197 1 12 HELIX 10 AB1 THR A 200 ASN A 203 5 4 HELIX 11 AB2 LEU A 204 THR A 209 1 6 HELIX 12 AB3 LEU A 226 ARG A 237 1 12 HELIX 13 AB4 ASP A 275 GLY A 280 5 6 HELIX 14 AB5 GLN A 285 ALA A 290 5 6 HELIX 15 AB6 ASP A 293 GLY A 306 1 14 HELIX 16 AB7 GLY A 310 SER A 332 1 23 HELIX 17 AB8 TRP A 336 THR A 353 1 18 HELIX 18 AB9 GLY A 354 GLN A 369 1 16 HELIX 19 AC1 SER B 26 ASP B 36 1 11 HELIX 20 AC2 GLY B 43 MET B 53 1 11 HELIX 21 AC3 ARG B 58 ALA B 73 1 16 HELIX 22 AC4 THR B 75 ALA B 90 1 16 HELIX 23 AC5 ASN B 117 ALA B 129 1 13 HELIX 24 AC6 GLY B 146 LEU B 154 1 9 HELIX 25 AC7 GLY B 161 VAL B 172 1 12 HELIX 26 AC8 ALA B 179 HIS B 183 1 5 HELIX 27 AC9 TYR B 186 GLY B 197 1 12 HELIX 28 AD1 THR B 200 ASN B 203 5 4 HELIX 29 AD2 LEU B 204 THR B 209 1 6 HELIX 30 AD3 PHE B 223 ASP B 225 5 3 HELIX 31 AD4 LEU B 226 ARG B 237 1 12 HELIX 32 AD5 ASP B 275 GLY B 280 5 6 HELIX 33 AD6 GLN B 285 ALA B 290 5 6 HELIX 34 AD7 ASP B 293 GLY B 306 1 14 HELIX 35 AD8 GLY B 310 GLY B 329 1 20 HELIX 36 AD9 TRP B 336 THR B 353 1 18 HELIX 37 AE1 GLY B 354 ARG B 368 1 15 SHEET 1 AA1 5 VAL A 103 GLY A 107 0 SHEET 2 AA1 5 ALA A 216 GLY A 220 1 O LEU A 218 N ASP A 104 SHEET 3 AA1 5 SER A 240 GLY A 246 1 O VAL A 244 N ILE A 219 SHEET 4 AA1 5 SER A 259 ALA A 265 -1 O VAL A 264 N VAL A 241 SHEET 5 AA1 5 SER A 268 PHE A 274 -1 O PHE A 274 N SER A 259 SHEET 1 AA2 2 VAL A 133 GLY A 137 0 SHEET 2 AA2 2 ILE A 174 PHE A 178 1 O CYS A 177 N LYS A 135 SHEET 1 AA3 5 VAL B 103 GLY B 107 0 SHEET 2 AA3 5 ALA B 216 GLY B 220 1 O LEU B 218 N ASP B 104 SHEET 3 AA3 5 SER B 240 GLY B 246 1 O VAL B 244 N ILE B 219 SHEET 4 AA3 5 SER B 259 ALA B 265 -1 O VAL B 264 N VAL B 241 SHEET 5 AA3 5 SER B 268 PHE B 274 -1 O PHE B 274 N SER B 259 SHEET 1 AA4 2 VAL B 133 GLY B 137 0 SHEET 2 AA4 2 ILE B 174 PHE B 178 1 O CYS B 177 N LYS B 135 LINK OG SER A 119 MN MN A 401 1555 1555 2.54 LINK OD1 ASP A 251 MN MN A 402 1555 1555 2.55 LINK OE2 GLU A 252 MN MN A 401 1555 1555 2.41 LINK OE2 GLU A 252 MN MN A 402 1555 1555 2.63 LINK MN MN A 401 O2A PRP A 403 1555 1555 2.51 LINK MN MN A 401 O2B PRP A 403 1555 1555 2.52 LINK MN MN A 401 O HOH A 507 1555 1555 2.55 LINK MN MN A 401 O HOH A 530 1555 1555 2.58 LINK MN MN A 402 O HOH A 507 1555 1555 2.66 LINK MN MN A 402 O HOH A 520 1555 1555 2.53 LINK MN MN A 402 O HOH A 529 1555 1555 2.59 LINK OG SER B 119 MN MN B 402 1555 1555 2.56 LINK OD1 ASP B 251 MN MN B 401 1555 1555 2.53 LINK OE2 GLU B 252 MN MN B 401 1555 1555 2.66 LINK OE2 GLU B 252 MN MN B 402 1555 1555 2.46 LINK MN MN B 401 O HOH B 502 1555 1555 2.68 LINK MN MN B 401 O HOH B 509 1555 1555 2.38 LINK MN MN B 401 O HOH B 546 1555 1555 2.55 LINK MN MN B 402 O3B PRP B 403 1555 1555 2.56 LINK MN MN B 402 O2A PRP B 403 1555 1555 2.55 LINK MN MN B 402 O HOH B 502 1555 1555 2.56 LINK MN MN B 402 O HOH B 537 1555 1555 2.58 CRYST1 94.178 78.481 100.446 90.00 109.90 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010618 0.000000 0.003845 0.00000 SCALE2 0.000000 0.012742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010588 0.00000