HEADER OXIDOREDUCTASE 25-JUN-15 5C86 TITLE NOVEL FUNGAL ALCOHOL OXIDASE WITH CATALYTIC DIVERSITY AMONG THE AA5 TITLE 2 FAMILY, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-506; COMPND 5 SYNONYM: ALCOHOL OXIDASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COLLETOTRICHUM GRAMINICOLA M1.001; SOURCE 3 ORGANISM_COMMON: MAIZE ANTHRACNOSE FUNGUS; SOURCE 4 ORGANISM_TAXID: 645133; SOURCE 5 GENE: GLRG_05590; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZA-C KEYWDS KELCH MOTIF, AA5, FUNGAL ALCOHOL OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.URRESTI,D.T.YIN,M.LAFOND,F.DERIKVAND,G.J.BERRIN,B.HENRISSAT, AUTHOR 2 P.H.WALTON,H.BRUMER,G.J.DAVIES REVDAT 6 10-JAN-24 5C86 1 REMARK REVDAT 5 10-JUL-19 5C86 1 REMARK REVDAT 4 20-FEB-19 5C86 1 REMARK LINK REVDAT 3 30-AUG-17 5C86 1 REMARK REVDAT 2 13-JAN-16 5C86 1 JRNL REVDAT 1 08-JUL-15 5C86 0 JRNL AUTH D.T.YIN,S.URRESTI,M.LAFOND,E.M.JOHNSTON,F.DERIKVAND,L.CIANO, JRNL AUTH 2 J.G.BERRIN,B.HENRISSAT,P.H.WALTON,G.J.DAVIES,H.BRUMER JRNL TITL STRUCTURE-FUNCTION CHARACTERIZATION REVEALS NEW CATALYTIC JRNL TITL 2 DIVERSITY IN THE GALACTOSE OXIDASE AND GLYOXAL OXIDASE JRNL TITL 3 FAMILY. JRNL REF NAT COMMUN V. 6 10197 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26680532 JRNL DOI 10.1038/NCOMMS10197 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 68603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3581 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5041 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 264 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3624 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 403 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 2.55000 REMARK 3 B12 (A**2) : -0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.512 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3887 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3567 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5323 ; 2.079 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8248 ; 1.104 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 518 ; 7.167 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;35.517 ;24.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;12.279 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.089 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 575 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4567 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 903 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2018 ; 1.633 ; 1.661 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2017 ; 1.630 ; 1.659 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2551 ; 2.199 ; 2.493 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2552 ; 2.199 ; 2.494 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1869 ; 2.418 ; 1.864 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1870 ; 2.418 ; 1.866 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2772 ; 3.484 ; 2.706 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4680 ; 4.719 ;14.591 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4511 ; 4.545 ;14.148 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5C86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72213 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 52.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.02700 REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.79400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2EIE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, PH 8.0, 12% V/V REMARK 280 POLYETHYLENE GLYCOL 8.000 AND 4.5% 1-BUTANOL., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.54667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.09333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.32000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.86667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 8.77333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 73 CE1 TYR A 120 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 567 O HOH A 610 4664 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 96 CA SER A 96 CB -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 70 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 171 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 171 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 316 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 CYS A 358 CA - CB - SG ANGL. DEV. = -13.0 DEGREES REMARK 500 TYR A 372 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 LYS A 443 CD - CE - NZ ANGL. DEV. = 23.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 24 -46.82 70.45 REMARK 500 GLU A 24 -48.90 78.47 REMARK 500 SER A 32 -76.78 -111.30 REMARK 500 SER A 33 -160.92 -175.95 REMARK 500 ASN A 154 50.18 39.70 REMARK 500 ASN A 154 54.09 39.70 REMARK 500 THR A 307 51.01 29.60 REMARK 500 ASN A 333 -132.28 -109.07 REMARK 500 LEU A 353 68.93 72.01 REMARK 500 LEU A 353 65.09 72.01 REMARK 500 CYS A 354 29.28 -145.91 REMARK 500 THR A 424 -1.55 78.21 REMARK 500 VAL A 455 -60.90 -92.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 5C86 A 1 482 UNP E3QHV8 E3QHV8_COLGM 25 506 SEQADV 5C86 HIS A 483 UNP E3QHV8 EXPRESSION TAG SEQADV 5C86 HIS A 484 UNP E3QHV8 EXPRESSION TAG SEQADV 5C86 HIS A 485 UNP E3QHV8 EXPRESSION TAG SEQADV 5C86 HIS A 486 UNP E3QHV8 EXPRESSION TAG SEQADV 5C86 HIS A 487 UNP E3QHV8 EXPRESSION TAG SEQADV 5C86 HIS A 488 UNP E3QHV8 EXPRESSION TAG SEQRES 1 A 488 GLN ASN VAL GLY LYS TRP GLY PRO MET VAL LYS PHE PRO SEQRES 2 A 488 VAL VAL PRO VAL ALA VAL ALA LEU VAL PRO GLU THR GLY SEQRES 3 A 488 ASN LEU LEU VAL TRP SER SER GLY TRP PRO ASN ARG TRP SEQRES 4 A 488 THR THR ALA GLY ASN GLY LYS THR TYR THR SER LEU TYR SEQRES 5 A 488 ASN VAL ASN THR GLY ASN ILE SER ASP ALA ILE VAL GLN SEQRES 6 A 488 ASN THR GLN HIS ASP MET PHE CYS PRO GLY THR SER LEU SEQRES 7 A 488 ASP ALA ASP GLY ARG ILE ILE VAL THR GLY GLY SER SER SEQRES 8 A 488 ALA ALA LYS THR SER VAL LEU ASP PHE LYS LYS GLY GLU SEQRES 9 A 488 SER SER PRO TRP THR PRO LEU SER ASN MET GLN ILE SER SEQRES 10 A 488 ARG GLY TYR GLN SER SER CYS THR THR SER GLU GLY LYS SEQRES 11 A 488 ILE PHE VAL ILE GLY GLY SER PHE SER GLY ALA GLY THR SEQRES 12 A 488 ARG ASN GLY GLU VAL TYR ASP PRO LYS ALA ASN THR TRP SEQRES 13 A 488 THR LYS LEU ALA GLY CYS PRO VAL LYS PRO LEU VAL MET SEQRES 14 A 488 GLN ARG GLY MET PHE PRO ASP SER HIS ALA TRP LEU TRP SEQRES 15 A 488 SER TRP LYS ASN GLY SER VAL LEU GLN ALA GLY PRO SER SEQRES 16 A 488 LYS LYS MET ASN TRP TYR ASP THR LYS GLY THR GLY SER SEQRES 17 A 488 ASN THR PRO ALA GLY LEU ARG GLY THR ASP GLU ASP SER SEQRES 18 A 488 MET CYS GLY VAL SER VAL MET TYR ASP ALA VAL ALA GLY SEQRES 19 A 488 LYS ILE PHE THR TYR GLY GLY GLY LYS GLY TYR THR GLY SEQRES 20 A 488 TYR ASP SER THR SER ASN ALA HIS ILE LEU THR LEU GLY SEQRES 21 A 488 GLU PRO GLY GLN ALA VAL GLN VAL GLN LYS LEU ALA ASN SEQRES 22 A 488 GLY LYS TYR ASN ARG GLY PHE ALA ASN ALA VAL VAL MET SEQRES 23 A 488 PRO ASP GLY LYS ILE TRP VAL VAL GLY GLY MET GLN LYS SEQRES 24 A 488 MET TRP LEU PHE SER ASP THR THR PRO GLN LEU THR PRO SEQRES 25 A 488 GLU LEU PHE ASP PRO ALA THR GLY SER PHE THR PRO THR SEQRES 26 A 488 THR PRO HIS THR VAL PRO ARG ASN TYR HIS SER THR ALA SEQRES 27 A 488 LEU LEU MET ALA ASP ALA THR ILE TRP SER GLY GLY GLY SEQRES 28 A 488 GLY LEU CYS GLY ALA ASN CYS LYS GLU ASN HIS PHE ASP SEQRES 29 A 488 GLY GLN PHE TRP SER PRO PRO TYR LEU PHE GLU ALA ASP SEQRES 30 A 488 GLY VAL THR PRO ALA LYS ARG PRO VAL ILE GLN SER LEU SEQRES 31 A 488 SER ASP THR ALA VAL ARG ALA GLY ALA PRO ILE THR ILE SEQRES 32 A 488 THR MET GLN ASP ALA GLY ALA TYR THR PHE SER MET ILE SEQRES 33 A 488 ARG VAL SER ALA THR THR HIS THR VAL ASN THR ASP GLN SEQRES 34 A 488 ARG ARG ILE PRO LEU ASP GLY GLN ASP GLY GLY ASP GLY SEQRES 35 A 488 LYS SER PHE THR VAL ASN VAL PRO ASN ASP TYR GLY VAL SEQRES 36 A 488 ALA ILE PRO GLY TYR TYR MET LEU PHE ALA MET ASN GLU SEQRES 37 A 488 ALA GLY VAL PRO CYS VAL ALA GLN PHE PHE LYS VAL THR SEQRES 38 A 488 LEU HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *403(H2 O) HELIX 1 AA1 ASP A 99 GLY A 103 5 5 HELIX 2 AA2 VAL A 164 VAL A 168 5 5 HELIX 3 AA3 PRO A 370 PHE A 374 5 5 SHEET 1 AA1 3 LYS A 5 TRP A 6 0 SHEET 2 AA1 3 ASP A 364 SER A 369 -1 O SER A 369 N LYS A 5 SHEET 3 AA1 3 VAL A 10 LYS A 11 -1 N VAL A 10 O GLY A 365 SHEET 1 AA2 4 LYS A 5 TRP A 6 0 SHEET 2 AA2 4 ASP A 364 SER A 369 -1 O SER A 369 N LYS A 5 SHEET 3 AA2 4 ILE A 346 GLY A 350 -1 N ILE A 346 O TRP A 368 SHEET 4 AA2 4 SER A 336 LEU A 340 -1 N LEU A 339 O TRP A 347 SHEET 1 AA3 5 ILE A 63 ASN A 66 0 SHEET 2 AA3 5 THR A 47 TYR A 52 -1 N THR A 47 O ASN A 66 SHEET 3 AA3 5 LEU A 28 TRP A 31 -1 N LEU A 28 O TYR A 52 SHEET 4 AA3 5 ALA A 18 LEU A 21 -1 N ALA A 20 O LEU A 29 SHEET 5 AA3 5 ALA A 420 THR A 422 -1 O THR A 421 N VAL A 19 SHEET 1 AA4 4 GLY A 75 LEU A 78 0 SHEET 2 AA4 4 ILE A 84 THR A 87 -1 O ILE A 85 N SER A 77 SHEET 3 AA4 4 THR A 95 LEU A 98 -1 O LEU A 98 N ILE A 84 SHEET 4 AA4 4 THR A 109 LEU A 111 -1 O LEU A 111 N THR A 95 SHEET 1 AA5 4 SER A 122 THR A 125 0 SHEET 2 AA5 4 ILE A 131 ILE A 134 -1 O PHE A 132 N CYS A 124 SHEET 3 AA5 4 GLU A 147 ASP A 150 -1 O TYR A 149 N ILE A 131 SHEET 4 AA5 4 THR A 155 LYS A 158 -1 O THR A 155 N ASP A 150 SHEET 1 AA6 4 LEU A 181 SER A 183 0 SHEET 2 AA6 4 SER A 188 GLN A 191 -1 O LEU A 190 N TRP A 182 SHEET 3 AA6 4 LYS A 197 ASP A 202 -1 O ASN A 199 N GLN A 191 SHEET 4 AA6 4 SER A 208 LEU A 214 -1 O THR A 210 N TRP A 200 SHEET 1 AA7 4 VAL A 225 ASP A 230 0 SHEET 2 AA7 4 LYS A 235 TYR A 239 -1 O LYS A 235 N ASP A 230 SHEET 3 AA7 4 ALA A 254 THR A 258 -1 O LEU A 257 N ILE A 236 SHEET 4 AA7 4 GLN A 267 LYS A 270 -1 O GLN A 269 N ILE A 256 SHEET 1 AA8 4 ASN A 282 VAL A 285 0 SHEET 2 AA8 4 ILE A 291 VAL A 294 -1 O TRP A 292 N VAL A 284 SHEET 3 AA8 4 GLU A 313 ASP A 316 -1 O PHE A 315 N ILE A 291 SHEET 4 AA8 4 SER A 321 PRO A 324 -1 O THR A 323 N LEU A 314 SHEET 1 AA9 4 ILE A 387 LEU A 390 0 SHEET 2 AA9 4 PRO A 400 MET A 405 -1 O THR A 404 N GLN A 388 SHEET 3 AA9 4 SER A 444 ASN A 448 -1 O PHE A 445 N ILE A 403 SHEET 4 AA9 4 GLN A 437 ASP A 438 -1 N GLN A 437 O THR A 446 SHEET 1 AB1 5 ALA A 394 ARG A 396 0 SHEET 2 AB1 5 GLN A 476 THR A 481 1 O THR A 481 N VAL A 395 SHEET 3 AB1 5 GLY A 459 MET A 466 -1 N LEU A 463 O GLN A 476 SHEET 4 AB1 5 THR A 412 ARG A 417 -1 N ILE A 416 O MET A 462 SHEET 5 AB1 5 ARG A 431 LEU A 434 -1 O LEU A 434 N PHE A 413 SSBOND 1 CYS A 354 CYS A 358 1555 1555 2.01 CISPEP 1 GLY A 193 PRO A 194 0 0.77 CRYST1 123.710 123.710 52.640 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008083 0.004667 0.000000 0.00000 SCALE2 0.000000 0.009334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018997 0.00000